Age | Commit message (Collapse) | Author |
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* gnu/packages/python.scm (python-scikit-learn): Update to 0.16.1.
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* gnu/packages/python.scm (python-scikit-learn)[inputs]: Replace "atlas" with
"openblas".
* gnu/packages/python.scm (python-scikit-learn)[arguments]: Remove build phase
'set-environment-variables, which is only needed when ATLAS is used.
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* gnu/packages/python.scm (python-scipy)[inputs]: Remove "atlas", add "lapack"
and "openblas".
* gnu/packages/python.scm (python-scipy)[arguments]: Replace phase
"set-environment-variables" with "configure-openblas".
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* gnu/packages/python.scm (python-numpy-bootstrap)[inputs]: Add lapack to
inputs, because OpenBLAS does not include lapack functions.
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* gnu/packages/patches/python-disable-ssl-test.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python): Add patch.
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* gnu/packages/python.scm (python-numpy)[inputs]: Use "openblas" instead of
"atlas".
* gnu/packages/python.scm (python-numpy)[arguments]: Configure build against
OpenBLAS.
Modified-By: Mark H Weaver <mhw@netris.org>
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* gnu/packages/python.scm (python-pillow): Update to 2.8.1.
[inputs]: Add freetype and libwebp.
(python-pillow, python2-pillow): Remove duplicated variables.
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* gnu/packages/glib.scm (dbus-glib): Propagate inputs dbus and glib.
* gnu/packages/audio.scm (patchage),
gnu/packages/gnuzilla.scm (icecat),
gnu/packages/python.scm (python-dbus): Drop inputs dbus and glib.
* gnu/packages/gnome.scm (colord, gconf, gnome-vfs, upower),
gnu/packages/mail.scm (claws-mail),
gnu/packages/messaging.scm (hexchat),
gnu/packages/wicd.scm (wicd): Drop input dbus.
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* gnu/packages/python.scm (python-rq, python2-rq): New variables.
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* gnu/packages/python.scm (python-redis, python2-redis): New variables.
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* gnu/packages/python.scm (python-click, python2-click): New variables.
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* gnu/packages/python.scm (python-pyzmq, python2-pyzmq): New variables.
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* gnu/packages/python.scm (python-seaborn, python2-seaborn): New variables.
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* gnu/packages/python.scm (python-pandas, python2-pandas): New variables.
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* gnu/packages/python.scm (python-scikit-image, python2-scikit-image): New
variables.
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* gnu/packages/python.scm (scons): Update to 2.3.4.
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* gnu/packages/python.scm (python-sympy, python2-sympy): New variables.
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* gnu/packages/python.scm (python-tornado, python2-tornado): New variables.
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* gnu/packages/python.scm (python2-backport-ssl-match-hostname): New variable.
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* gnu/packages/python.scm (python-waf, python2-waf): New variables.
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Fixes a regression introduced in 08c0450.
* gnu/packages/python.scm (python)[native-search-paths]: Use
'version-major+minor' to compute PYTHONPATH.
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* gnu/packages/python.scm (python): Update from 3.3.5 to 3.4.3.
* gnu/packages/patches/python-fix-tests.patch: Update the required test fixes.
* gnu/packages/patches/python-libffi-mips-n32-fix.patch: Remove it...
* gnu-system.am (dist_patch_DATA): ... and do not reference it here.
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* gnu/packages/python.scm (python-drmaa, python2-drmaa): New variables.
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* gnu/packages/python.scm (python-singledispatch, python2-singledispatch): New
variables.
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* gnu/packages/python.scm (python-requests): New variable.
(python2-requests): Generate based on Python 3 variant.
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* gnu/packages/python.scm (python-networkx, python2-networkx): New variables.
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* gnu/packages/python.scm (python-decorator, python2-decorator): New
variables.
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* gnu/packages/python.scm (python-2): Add rpath for lib directory of output to
LDFLAGS. Remove 'patchelf' from inputs. Remove #:modules and
#:imported-modules from arguments. Remove 'add-lib-to-runpath' phase.
(python): Do not add #:modules to inherited package arguments.
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* gnu/packages/python.scm (python-h5py, python2-h5py): New variables.
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* gnu/packages/python.scm (python2-xlib): New variable.
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* gnu/packages/avr.scm, gnu/packages/compression.scm,
gnu/packages/curl.scm, gnu/packages/cyrus-sasl.scm,
gnu/packages/databases.scm, gnu/packages/firmware.scm,
gnu/packages/flex.scm, gnu/packages/fontutils.scm,
gnu/packages/gd.scm, gnu/packages/ghostscript.scm,
gnu/packages/gnunet.scm, gnu/packages/graphics.scm,
gnu/packages/hugs.scm, gnu/packages/image.scm,
gnu/packages/linux.scm, gnu/packages/mail.scm,
gnu/packages/maths.scm, gnu/packages/mit-krb5.scm,
gnu/packages/python.scm, gnu/packages/rdf.scm,
gnu/packages/ssh.scm, gnu/packages/tcl.scm,
gnu/packages/xdisorg.scm, gnu/packages/xiph.scm,
gnu/packages/yasm.scm, gnu/packages/zip.scm: Use 'non-copyleft'
instead of 'bsd-style'.
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Fixes a problem introduced in a1920bc9f25210b2.
Debugged by David Thompson.
* gnu/packages/python.scm (python-testlib)[license]: 'expat' ->
'license:expat'.
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* gnu/packages/python.scm (python-testlib, python2-testlib): New variables.
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* gnu/packages/python.scm (python2-pil): Add snippet.
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* gnu/packages/which.scm: Remove.
* gnu-system.am (GNU_SYSTEM_MODULES): Remove it.
* gnu/packages/base.scm (which): New variable.
* gnu/packages/aspell.scm, gnu/packages/audio.scm,
gnu/packages/autogen.scm, gnu/packages/cdrom.scm,
gnu/packages/compression.scm, gnu/packages/datamash.scm,
gnu/packages/games.scm, gnu/packages/glib.scm,
gnu/packages/gnu-pw-mgr.scm, gnu/packages/gnutls.scm,
gnu/packages/gps.scm, gnu/packages/guile.scm,
gnu/packages/java.scm, gnu/packages/libevent.scm,
gnu/packages/linux.scm, gnu/packages/lisp.scm,
gnu/packages/node.scm, gnu/packages/ntp.scm,
gnu/packages/orpheus.scm, gnu/packages/pciutils.scm,
gnu/packages/python.scm, gnu/packages/qt.scm,
gnu/packages/rsync.scm, gnu/packages/sawfish.scm,
gnu/packages/scheme.scm, gnu/packages/ssh.scm,
gnu/packages/statistics.scm, gnu/packages/texlive.scm,
gnu/packages/wdiff.scm: Adjust accordingly.
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* gnu/packages/python.scm (snakemake): New variable.
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* gnu/packages/python.scm (python-scikit-learn, python2-scikit-learn): New
variables.
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* gnu/packages/python.scm (python-pyyaml, python2-pyyaml): New variables.
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Conflicts:
gnu/packages/gnupg.scm
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* gnu/packages/aarddict.scm (aarddict), gnu/packages/algebra.scm (arb),
gnu/packages/audio.scm (jack-2, lvtk),
gnu/packages/bioinformatics.scm (bedops, bedtools, bowtie),
gnu/packages/game-development.scm (tiled),
gnu/packages/games.scm (minetest-data, minetest, retroarch),
gnu/packages/jrnl.scm (jrnl), gnu/packages/kde.scm (qjson),
gnu/packages/libevent.scm (libuv), gnu/packages/linux.scm (pflask),
gnu/packages/mail.scm (offlineimap, libetpan),
gnu/packages/maths.scm (arpack-ng), gnu/packages/ninja.scm (ninja),
gnu/packages/nutrition.scm (gourmet),
gnu/packages/python.scm (python-cairocffi), gnu/packages/rdf.scm (lrdf),
gnu/packages/ruby.scm (ruby-i18n), gnu/packages/sxiv.scm (sxiv): Add
'file-name' field to origin.
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* gnu/packages/python.scm (python2-numpy, python2-matplotlib,
python2-ipython): Keep input python2-numpydoc created by
package-with-python2.
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* gnu/packages/python.scm (python-numpydoc): Drop one test for all Python
versions.
(python2-numpydoc): Define it by package-with-python2 without modifications.
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* gnu/packages/gtk.scm (python2-py2cairo): Rename to ...
(python2-pycairo): ... this
(python2-pygtk): Adapt input.
* gnu/packages/glib.scm (python2-pygobject-2): Adapt input.
* gnu/packages/python.scm (package-with-python2): Adapt input.
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This is a followup to commit b0fd2bd.
* gnu/packages/gawk.scm (gawk)[arguments] <install-locales>: Add comment
on why we leave this here.
* gnu/packages/guile.scm (guile-ncurses)[arguments]: Remove
'install-locales' phase.
* gnu/packages/swig.scm (swig)[arguments]: Likewise.
* gnu/packages/python.scm (python-matplotlib): Remove 'LOCPATH' setting
and 'localedef' invocation.
(python-scipy): Likewise.
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This is a followup to commit cd0385b.
* gnu/packages/bioinformatics.scm (hisat)[arguments]: Remove 'unpack'
phase.
* gnu/packages/image.scm (freeimage): Likewise.
* gnu/packages/python.scm (python2-cssutils): Likewise.
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* gnu/packages/python.scm (python-html5lib): Add propagated input python-six.
(python2-html5lib): Add propagated input python2-six.
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* gnu/packages/python.scm (python2-six): New variable.
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* gnu/packages/python.scm (python2-oauthlib): Drop inherited fields.
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* gnu/packages/python.scm (python-scipy): Install en_US.UTF-8 locale in
install-doc phase to avoid encoding error.
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