| Age | Commit message (Expand) | Author |
|---|
| 2024-12-21 | gnu: python-mpl-scatter-density: Fix buld....* gnu/packages/python-science.scm (python-mpl-scatter-density):
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: Ica320293019ae3e88e2b0654e356bc4d1be50626
| Sharlatan Hellseher |
| 2024-12-21 | gnu: python-supersmoother: Fix build...* gnu/packages/python-science.scm (python-supersmoother):
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.
Change-Id: I33f151e74d54b6e0647b3cfae73c063522c35ea3
| Sharlatan Hellseher |
| 2024-12-21 | gnu: python-trimesh: Update to 4.5.3....* gnu/packages/python-science.scm (python-trimesh): Update to 4.5.3, fix
build.
[arguments] <phases>: Remove 'fix-build, as resolved upstream.
Delete 'sanity-check.
Change-Id: I9320912764506a8c0d0bd7f300dca98b32ce4333
| Sharlatan Hellseher |
| 2024-12-19 | gnu: Add pyre....* gnu/packages/python-science.scm (pyre): New variable.
Change-Id: I4a26d7a83f24210104cb0ab50b5392ab97d9bfc4
| Maxim Cournoyer |
| 2024-12-17 | gnu: python-pandas-stubs: Update to 2.2.3.241126....* gnu/packages/python-science.scm (python-pandas-stubs): Update to
2.2.3.241126.
[arguments]: Ignore tests/test_io.py in #:test-flags.
[native-inputs]: Replace python-sqlalchemy with python-sqlalchemy-2.
Change-Id: If27b3a5b687ca230a209e8a8087a89802414912e
| Maxim Cournoyer |
| 2024-12-17 | gnu: Add python-ndindex....Adapted from <https://raw.githubusercontent.com/Blosc/python-blosc2/refs/heads/main/.guix/modules/python-blosc2-package.scm>.
* gnu/packages/python-science.scm (python-ndindex): New variable.
Co-authored-by: Ivan Vilata i Balaguer <ivan@selidor.net>
Change-Id: I38fbcbd8859c2ddbfdd39e8d84a63b20deef75c4
| Maxim Cournoyer |
| 2024-12-15 | gnu: python-xarray: Disable bad tests....* gnu/packages/python-science.scm (python-xarray)[arguments]: Disable two
tests.
Change-Id: Ia9799a5bd247907ee875925431cd0fe2714f51b3
| Ricardo Wurmus |
| 2024-12-13 | gnu: Remove python-typeguard-4....* gnu/packages/python-xyz.scm (python-typeguard-4): Delete variable.
* gnu/packages/python-check.scm (python-icontract) [native-inputs]:
Remove python-typeguard-4; add python-typeguard.
* gnu/packages/python-science.scm (python-pandera) [propagated-inputs]:
Remove python-typeguard-4; add python-typeguard.
Change-Id: Ie20deee06629452c804fa6f62b1bd1f67038bc86
| Sharlatan Hellseher |
| 2024-12-13 | gnu: python-pandas-2: Update to 2.2.3....* gnu/packages/python-science.scm (python-pandas-2): Update to 2.2.3.
[arguments]<test-flags>: Ignore move failing test which require optional
dependencies.
[native-inputs]: Remove python-cython-0.29.35; add python-cython-3.
Change-Id: I402627132c9f0771470d89dea986c92855ae4ced
| Sharlatan Hellseher |
| 2024-12-13 | gnu: Remove python-pytest-next....* gnu/packages/check.scm (python-pytest-next): Delete variable.
* gnu/packages/python-science.scm (python-pandas-2) [native-inputs]:
Remove python-pytest-next; add python-pytest.
* gnu/packages/python-xyz.scm (python-hy) [native-inputs]: Remove
python-pytest-next; add python-pytest.
Change-Id: I57e14aa11c2e3cd1d8e8119f566b49fd902c7957
| Sharlatan Hellseher |
| 2024-12-13 | gnu: python-fast-histogram: Adjust inputs....* gnu/packages/python-science.scm (python-fast-histogram)
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: I53e2ce8019c421894e50138099539021a91f7c24
| Sharlatan Hellseher |
| 2024-12-13 | gnu: python-distributed: Adjust inputs....* gnu/packages/python-science.scm (python-distributed) [native-inputs]:
Add python-wheel.
Change-Id: I9c8620c04f7ed75af6900b885b58937621af15f9
| Sharlatan Hellseher |
| 2024-12-13 | gnu: python-scikit-fem: Update to 10.0.2....* gnu/packages/python-science.scm (python-scikit-fem): Update to
10.0.2. Improve style.
[arguments]<test-flags>: Skip some failing tests.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: I4efe9f0e93d315c7b979bf3160fa5a3a97ab2115
| Sharlatan Hellseher |
| 2024-12-13 | gnu: python-unyt: Adjust inputs....* gnu/packages/python-science.scm (python-unyt): Shift the order of
native and propagated inuts, add missing.
[native-inputs]: Add python-setuptools-scm.
Change-Id: Ibb1606be89743ac7d90fcafeaa75eae7ccfd756c
| Sharlatan Hellseher |
| 2024-12-13 | gnu: python-pandera: Adjust inputs....* gnu/packages/python-science.scm (python-pandera) [native-inputs]: Add
python-setuptools and python-wheel.
Change-Id: Ic0a46a11f0410a5d4a29dce8416a9d3ff89f471f
| Sharlatan Hellseher |
| 2024-12-13 | gnu: build-system/pyproject: Add missing native-inputs....* gnu/packages/bioinformatics.scm (python-ega-download-client)
[native-inputs]: Add python-setuptools and python-wheel.
* gnu/packages/databases.scm (datasette)[native-inputs]: Add
python-pip.
* gnu/packages/django.scm (python-django-localflavor,
python-django-contact-form)[native-inputs]: Add python-setuptools and
python-wheel.
* gnu/packages/graphviz.scm (python-uqbar)[native-inputs]: Add
python-setuptools and python-wheel.
* gnu/packages/jupyter.scm (python-jupyterlab-server)[native-inputs]:
Add python-wheel.
(python-nbstripout)[native-inputs]: Add python-setuptools and
python-wheel.
* gnu/packages/machine-learning.scm (python-captum,
python-linear-operator, python-gpytorch)[native-inputs]: Add
python-setuptools.
* gnu/packages/music.scm (abjad, abjad-ext-rmarkers,
abjed-ext-nauert, python-mutagen)[native-inputs]: Add
python-setuptools and python-wheel.
* gnu/packages/package-management.scm
(python-conda-package-handling)[native-inputs]: Add python-setuptools
and python-wheel.
(conda)[native-inputs]: Add python-wheel.
* gnu/packages/python-check.scm (python-pyinstrument,
python-pytest-testmon, python-pytest-trio, python-nbval,
python-pytest-toolbox)[native-inputs]: Add python-setuptools and
python-wheel.
(python-nptyping)[native-inputs]: Add python-setuptools.
* gnu/packages/python-check.scm (python-dask-expr)[native-inputs]:
Add python-setuptools and python-wheel.
* gnu/packages/python-web.scm (parfive, python-aioftp, python-hupper,
python-sanic, python-mechanicalsoup, python-tinycss, python-aiostream,
python-cbor2, gunicorn)[native-inputs]: Add python-setuptools and
python-wheel.
* gnu/packages/python-xyz.scm (python-apprise, python-jaraco-classes,
python-sparse, python-shtab, python-pyan3)[native-inputs]: Add
python-setuptools.
(python-jupytext, python-orderedmultidict, python-identify, python-nodeenv,
python-cfgv, python-zarr, python-multipart, python-nbconvert, python-cram,
python-immutables, python-numpydoc, python-cairosvg, python-unidecode,
python-black, python-multidict, python-mpv-jsonipc, python-humanize,
python-cmd2)[native-inputs]: Add python-setuptools and python-wheel.
(python-partd, python-dask, python-zarr)[native-inputs]: Add
python-wheel.
(python-nbconvert)[propagated-inputs]: Add texlive-etoolbox. Remove
duplicate textlive-jknapltx.
(python-isort)[native-inputs]: Add python-pip.
* gnu/packages/simulation.scm (python-fenics-dijitso)[native-inputs]:
Add python-setuptools and python-wheel.
* gnu/packages/sphinx.scm (python-pydata-sphinx-theme,
python-sphinx-autodoc-typehints)[native-inputs]: Add
python-setuptools.
* gnu/packages/syndication.scm (tuir)[native-inputs]: Add
python-setuptools and python-wheel.
* gnu/packages/terminals.scm (python-halo)[native-inputs]: Add
python-setuptools and python-wheel.
* gnu/packages/time.scm (python-arrow, python-dateutil)
[native-inputs]: Add python-setuptools and python-wheel.
* gnu/packages/version-control.scm (pre-commit)[native-inputs]: Add
python-setuptools and python-wheel. Remove input labels.
* gnu/packages/virtualization.scm (python-qemu-qmp,
python-transient)[native-inputs]: Add python-setuptools and
python-wheel.
* gnu/packages/xorg.scm (python-xcffib)[native-inputs]: Add
python-setuptools and python-wheel.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: Id61cf8cdc47bd4c2871c0a9c8e9a5bfd51157df0
| Nicolas Graves |
| 2024-12-13 | gnu: Add python-setuptools/python-wheel where necessary....Changes to pyproject-build-system require explicit dependency on
setuptools/wheel.
Change-Id: Icd7699fc1dc56e974ae7568f2ae916dbf876bea5
| Lars-Dominik Braun |
| 2024-12-13 | build-system/pyproject: Use python-sans-pip-wrapper as default-python....Also adds python-setuptools and python-wheel to relevant packages,
either to native-inputs or to propagated inputs if the pkg_resources
Python module is loaded at runtime.
* guix/build-system/pyproject.scm (default-python): Default to
python-sans-pip-wrapper.
Change-Id: I2d986c2225114f54459dd6bb360913106e52cdf4
| Lars-Dominik Braun |
| 2024-12-10 | gnu: Fix synopsis in various python packages....* gnu/packages/python-compression.scm (python-inflate64): Fix synopsis.
* gnu/packages/python-science.scm (python-xarray-dataclasses): Fix synopsis.
* gnu/packages/python-web.scm (python-waybackpack): Fix synopsis.
* gnu/packages/python-xyz.scm (python-mir-eval): Fix synopsis.
(python-restructuredtext-lint): Fix synopsis. (python-pixelmatch): Fix
synopsis. (python-google-pasta): Fix synopsis. (python-xmp-toolkit): Fix
synopsis.
* gnu/packages/bioinformatics.scm (python-mgatk): Fix synopsis.
* gnu/packages/rpc.scm (python-grpc-stubs): Fix synopsis.
* gnu/packages/simulation.scm (python-commonroad-io): Fix synopsis.
Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
| Gabriel Wicki |
| 2024-12-04 | gnu: packages/python-science: Update copyright header....* gnu/packages/python-science.scm: Update copyright header for Antero
Mejr <antero@mailbox.org> .
Change-Id: I4153d51d74f7de1629d5a7851346021b77e7352d
| Sharlatan Hellseher |
| 2024-12-04 | gnu: Add python-scikit-surprise....* gnu/packages/python-science.scm (python-scikit-surprise): New variable.
Change-Id: I9b5e13f0c985f34bb0bd759e76ebd27221a340a4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Antero Mejr |
| 2024-11-18 | gnu: Add python-pyet....* gnu/packages/python-science.scm (python-pyet): New variable.
Change-Id: Ia2be23aeb83911aa93869f82cf0667da8af509c4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Rick Huijzer |
| 2024-11-01 | gnu: python-scs: Adjust inputs....* gnu/packages/python-science.scm (python-scs) [inputs]: Remove
meson-python.
[native-inputs]: Remove python-meson-python; add meson-python.
Change-Id: I0122ecd0db405b134a6587c32592b59522e6320b
| Sharlatan Hellseher |
| 2024-10-30 | gnu: python-trimesh: Update to 4.1.8....* gnu/packages/python-science.scm (python-trimesh): Update to 4.1.8.
[arguments]<test-flags>: Refresh list of disabled tests.
[propagated-inputs]: Add python-meshio, python-psutil, python-pycollada,
python-pyglet, and python-scikit-image.
[native-inputs]: Remove python-pytest-cov.
[description]: Adjust fill alignment.
Change-Id: I722311cbe883499c0eca99d0f30b0788e87598d3
| Sharlatan Hellseher |
| 2024-10-30 | gnu: Add python-pymcubes....* gnu/packages/python-science.scm (python-pymcubes): New variable.
Change-Id: I47273d933824fb96d3c2c1950f0a2f89ce635c41
| Sharlatan Hellseher |
| 2024-10-02 | gnu: python-pynsee: Update to 0.1.8....* gnu/packages/python-science.scm (python-pynsee): Update to 0.1.8.
[propagated-inputs]: Add python-openpyxl, python-platformdirs, python-pyarrow, and
python-xlrd.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: Ibb9ec7b979b7e27d2c2a48e2bf27dfcddc79200d
| Sharlatan Hellseher |
| 2024-10-02 | gnu: Add python-pynsee....* gnu/packages/python-science.scm (python-pynsee): New variable.
Change-Id: I4e93d26ad4b6be238b0e4cce82ea77030caf6e02
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| Nicolas Graves |
| 2024-09-02 | gnu: python-scikit-fuzzy: Enable tests....* gnu/packages/python-science.scm (python-scikit-fuzzy)[arguments]:
Remove #:tests? #f and add #:test-flags.
[native-inputs]: Remove python-nose. Add python-pytest.
Change-Id: I317d6ad2fdede1a3a4737c45118932e2ddc5ce46
| Vinicius Monego |
| 2024-09-02 | gnu: python-scikit-fuzzy: Update to 0.5.0....* gnu/packages/python-science.scm (python-scikit-fuzzy): Update to 0.5.0.
[source]: Adjust URI.
[build-system]: Move to pyproject-build-system.
Change-Id: I5dbe3788c34767d4af0c1b526a3ce79f0f6d532f
| Vinicius Monego |
| 2024-08-31 | gnu: python-clarabel: Fix build....* gnu/packages/python-science.scm (python-clarabel)[arguments]:
Don't refer to nonexistent 'prepare-python-module' phase.
Change-Id: I002e6a5a5bf9a540c5d6e169a9ba59dc96f6b361
| 宋文武 |
| 2024-08-31 | gnu: meson: Update to 1.1.1 and ungraft....* gnu/packages/build-tools.scm (meson): Update to 1.1.1.
[replacement]: Remove.
(meson/newer): Remove.
(meson-python/newer): Remove.
* gnu/packages/pdf.scm (capypdf)[arguments]: Remove #:meson.
Change-Id: I77dd9203461e8dd635753ec742bd8046dd63e3f9
* gnu/packages/python-science.scm (python-pandas-2): Use regular meson-python.
* gnu/packages/python-xyz.scm (python-contourpy): Same
| Ludovic Courtès |
| 2024-07-30 | gnu: Add python-mpl-scatter-density....* gnu/packages/python-science.scm (python-mpl-scatter-density): New variable.
Change-Id: Id4ea80b2c62642affbe1944e0c5126a1c53d16c3
| Sharlatan Hellseher |
| 2024-07-30 | gnu: python-fast-histogram: Adjust inputs....* gnu/packages/python-science.scm (python-fast-histogram): Fix lint
warnings and adjust inputs.
[native-inputs]: Add python-setuptools-scm.
Change-Id: Ic51660d7542114f2bb45be4720ab4d899633e56d
| Sharlatan Hellseher |
| 2024-07-05 | gnu: python-scikit-optimize: Update to 0.10.2....* gnu/packages/python-science.scm (python-scikit-optimize): Update to 0.10.2.
[source]: Switch to maintained repository. Remove compatibility patches and
snippet.
* gnu/packages/patches/python-scikit-optimize-1148.patch,
gnu/packages/patches/python-scikit-optimize-1150.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
Change-Id: I6c23c93d3c256b0b97166f80eaeab7f2c7282c5f
| Vinicius Monego |
| 2024-06-30 | gnu: Add python-fast-histogram....* gnu/packages/python-science.scm (python-fast-histogram): New variable.
Change-Id: Ibecdd87db9c132052a8eca76c01108c4f6e624c4
| Sharlatan Hellseher |
| 2024-06-30 | gnu: Add python-corner....* gnu/packages/python-science.scm (python-corner): New variable.
Change-Id: I75c3a88ba4b729fb7c9a50dd85a00b22cdcaa828
| Sharlatan Hellseher |
| 2024-06-26 | gnu: Add python-spin....* gnu/packages/python-science.scm (python-spin): New variable.
Change-Id: I794845d559f3f4f3ab9cf98b0e4a4321b470f7f8
Signed-off-by: jgart <jgart@dismail.de>
| Vinicius Monego |
| 2024-06-16 | gnu: Add python-formulaic....* gnu/packages/python-science.scm (python-formulaic): New variable.
Change-Id: Ib21bfdc3050c042abc7494501d7b0409be8ed3bb
| Ricardo Wurmus |
| 2024-06-16 | gnu: Add python-scikit-survival....* gnu/packages/python-science.scm (python-scikit-survival): New variable.
Change-Id: I657f5d737280cac74f93f7f3d2b56a9a0a41588e
| Ricardo Wurmus |
| 2024-05-30 | gnu: python-unyt: Fix version detection....* gnu/packages/python-science.scm (python-unyt): Fix version detection.
[native-inputs]: Add python-setuptools-scm.
Change-Id: I96e7d2530b15299a39911bebf62b76a9191ea91b
Signed-off-by: Andrew Tropin <andrew@trop.in>
| Sharlatan Hellseher |
| 2024-05-26 | gnu: python-scikit-image: Disable test_ellipse_parameter_stability....As it's flaky, see https://github.com/scikit-image/scikit-image/issues/7061
* gnu/packages/python-science.scm (python-scikit-image)[arguments]: Add
#:test-flags.
Change-Id: Ic1fc301eb0fad5330c34780ce096c446c1076824
| Christopher Baines |
| 2024-05-22 | gnu: python-pandera: Update to 0.18.0, fix build....* gnu/packages/python-science.scm (python-pandera): Update to 0.18.0.
[arguments] <#:test-flags>: Disable one more failing test.
Change-Id: I4d3f59dae8d90ea0afbe9cc932fc6163def282c9
| Sharlatan Hellseher |
| 2024-05-11 | gnu: python-scikit-image: Update to 0.23.2....* gnu/packages/python-science.scm (python-scikit-image): Update to 0.23.2.
Change-Id: Ief01a2aef5202dd859f9337a45105088d605509e
| Vinicius Monego |
| 2024-05-05 | gnu: python-gpy: Update to 1.13.1....* gnu/packages/python-science.scm (python-gpy): Update to 1.13.1.
[source]: Remove snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Remove phase 'remove-plotting-tests; add phase 'compatibility.
[native-inputs]: Remove python-nose and python-climin; add python-pytest,
python-matplotlib, and python-pods.
Change-Id: I1ed95e3ad2e8444979fd2cf272d7f3104b1bf2ec
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-paramz: Update to 0.9.6....* gnu/packages/python-science.scm (python-paramz): Update to 0.9.6.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-nose.
Change-Id: I62a2f7ecf600f48da74f4d233e108360a583d5ca
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-pingouin: Update to 0.5.4....* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.4.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; add 'sklearn-compatibility phase;
skip one test.
Change-Id: I8d13f15558eadee0547f04bc4bb89a0fd0e0767b
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-plotnine: Fix version string....* gnu/packages/python-science.scm (python-plotnine)[native-inputs]: Add
python-setuptools-scm.
Change-Id: I0fc2f3ad7edcdaaa5e3bf9774bc6840c8fbeb727
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-plotnine: Disable test because of harmless warning....* gnu/packages/python-science.scm (python-plotnine)[arguments]: Disable
test_save_method which prints an unexpected warning..
Change-Id: I28a20b85ee549311bed534efbf801db930419ca9
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-dask: Propagate python-dask-expr....* gnu/packages/python-xyz.scm (python-dask/bootstrap): New variable.
(python-dask)[propagated-inputs]: Add python-dask-expr.
* gnu/packages/python-science.scm (python-dask-expr)[propagated-inputs]:
Remove python-dask.
[native-inputs]: Add python-dask/bootstrap.
Change-Id: I1196641425421c7dde94c6fea8d573e78db9c402
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-pandas-stubs: Accept numpy 1.23....* gnu/packages/python-science.scm (python-pandas-stubs)[arguments]: Add phase
'relax-requirements.
Change-Id: I62e04574d53abd7d67068d08475522dd8989dcca
| Ricardo Wurmus |
