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2024-12-02gnu: Add freedict-tools.Runciter
* gnu/packages/dictionaries.scm (freedict-tools): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: I141d30aea0e2c492b272be2ab9359e6b7569f932
2024-12-02gnu: Add dictd.Runciter
* gnu/packages/dictd.scm (dictd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: Id1dbe8c77186574e7ad98ce3f7c8fa14b99b4db4
2024-12-02gnu: Add (gnu packages dictd).Runciter
* gnu/packages/dictd.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: I3b68fbbed0a7a44287a6eda6c1e66e068fa17b8f
2024-12-02tests: Adjust ‘guix build -P1’ test to new packages.Ludovic Courtès
Fixes a bug introduced in 794e079437c8687f49d294322dab3b7a8a6abacf whereby the grep patterns used in this test would also match /gnu/store/…-rust-libgit2-sys-0.17.0+1.8.1.drv, thus getting 5 matches instead of 4. * tests/guix-build.sh: Refine grep patterns for ‘guix build -P1’ test. Reported-by: Janneke Nieuwenhuizen <janneke@gnu.org> Change-Id: Iae35e6ee44b8eca0ef66c1d8ab7f9ff65a59d8d0
2024-12-02gnu: homer: Install config.txt.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (homer)[native-inputs]: Add config.txt. [arguments]: Update 'configure phase to place config.txt in expected location; patch configuration code to optionally load a user's configuration file. Change-Id: Ib05c828e751c6568524bbef45997a42fade4545a
2024-12-02gnu: homer: Install homer executable.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (homer)[arguments]: Update 'install phase to also install "homer" to the bin directory. Change-Id: Ia2d23fce493f9c10cc43ac126cd83956b4b9bb05
2024-12-02Merge remote-tracking branch 'origin/rust-team'Efraim Flashner
Change-Id: I6d5c28252f060eeb69eb02fd281e7268bb885b29
2024-12-02gnu: zstd: Fix cross-building to mingw32.Efraim Flashner
* gnu/packages/compression.scm (zstd)[arguments]: Adjust the custom 'adjust-library-locations phase to have separate logic for targeting mingw32. Adjust the make-flags to add some extra flags when targeting mingw32. Change-Id: Ifd32a6bd9157af93c7338dacc96467e2756b9314
2024-12-02gnu: redis: Add comment about upcoming license change.Efraim Flashner
* gnu/packages/databases.scm (redis): Add a note with the package to be aware of the upcoming non-free license change. Change-Id: I60ef9bce81b6650d88f567e98c5bcf543a13082e
2024-12-02packages: 'package-input-rewriting/spec' optionally replace hidden.Greg Hogan
Commit eee95b5a879b7096dffd533f24107cf8926b621e changed package rewriting to ignore hidden packages. This patch permits the previous use by adding an option to rewrite hidden packages. * guix/packages.scm (package-input-rewriting/spec)[rewrite]: When P is hidden, return it as-is unless #:replace-hidden? has been enabled. * tests/packages.scm ("package-input-rewriting/spec, replace hidden package"): New test. * doc/guix.texi (Defining Package Variants): Update. Change-Id: I0a7988cac70e0c6b88b0fe6e27c1036fa723e030 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-12-02pack: Add ‘--file=FILE’ with the same meaning as for ‘guix build’.Arne Babenhauserheide
* guix/scripts/pack.scm (%options): add --file=FILE, but no shorthand (that’s already taken for format). * doc/guix.texi (Invoking guix pack): Document it. Change-Id: I87797fccdf218ead3b7f471a84034e8a8d566245 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-12-02maint: Run ‘etc/upgrade-manifest.scm’ in a UTF-8 locale.Ludovic Courtès
* etc/upgrade-manifest.scm: Add calls to ‘setlocale’ to force a UTF-8 locale. Change-Id: Ia567a1e08124d9eab7fb32f3363681a8f37431b1
2024-12-02gnu: python-pairtools: Update to 1.1.0-fix.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pairtools): Update to 1.1.0-fix. [build-system]: Use pyproject-build-system. [arguments]: Add phase 'patch-setup.py. [native-inputs]: Add python-pytest-cov, python-setuptools, and python-wheel. Change-Id: Ifa3c12de228420d8fdd7b0053bb9da80b9b3efe4
2024-12-02gnu: Add macs-3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (macs-3): New variable. Change-Id: I4bc417e90a1e9d6d28226ea4f66ddc035826c2c4
2024-12-02gnu: python-hmmlearn: Update to 0.3.3.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-hmmlearn): Update to 0.3.3. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase; add phases 'set-core-count and 'build-extensions. [propagated-inputs]: Remove pybind11 and python-setuptools-scm. [native-inputs]: Add pybind11, python-setuptools-scm, and util-linux. [properties]: Add hints for the updater. Change-Id: I1acb69c74ae9c4a508fe28cdaf834d258e7778ff
2024-12-02import/crate: Fix typo.Ricardo Wurmus
guix/import/crate.scm (lookup-crate): Fix typo in docstring. Change-Id: I5492387b93b27ab42999d5984fa7f02e8bee11e2
2024-12-02gnu: Add python-cykhash.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-cykhash): New variable. Change-Id: I7f46da1f53b10957c102ca21e74f144955676730
2024-12-02gnu: emacs-gnosis: Update to 0.4.8.Thanos Apollo
* gnu/packages/emacs-xyz.scm (emacs-gnosis): Update to 0.4.8. [home-page]: Add ending slash. [synopsis]: Remove ending period. [description]: Use two spaces after sentence. Change-Id: Ie80016fc190e66695b7a8ea8e3fded7854ebc872 Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-12-02gnu: librewolf: Update to 133.0-1 [security fixes].Ian Eure
New upstream version. Fixes CVEs: CVE-2024-11691: Out-of-bounds write in Apple GPU drivers via WebGL CVE-2024-11700: Potential Tapjacking Exploit for Intent Confirmation on Android CVE-2024-11692: Select list elements could be shown over another site CVE-2024-11701: Misleading Address Bar State During Navigation Interruption CVE-2024-11702: Inadequate Clipboard Protection in Private Browsing Mode on Android CVE-2024-11693: Download Protections were bypassed by .library-ms files on Windows CVE-2024-11694: CSP Bypass and XSS Exposure via Web Compatibility Shims CVE-2024-11695: URL Bar Spoofing via Manipulated Punycode and Whitespace Characters CVE-2024-11703: Password access without authentication via PIN bypass on Android CVE-2024-11696: Unhandled Exception in Add-on Signature Verification CVE-2024-11697: Improper Keypress Handling in Executable File Confirmation Dialog CVE-2024-11704: Potential Double-Free Vulnerability in PKCS#7 Decryption Handling CVE-2024-11698: Fullscreen Lock-Up When Modal Dialog Interrupts Transition on macOS CVE-2024-11705: Null Pointer Dereference in NSC_DeriveKey CVE-2024-11706: Null Pointer Dereference in PKCS#12 Utility CVE-2024-11708: Data race with PlaybackParams CVE-2024-11699: Memory safety bugs fixed in Firefox 133, Firefox ESR 128.5, and Thunderbird 128.5 * gnu/packages/librewolf.scm (librewolf): Update to 133.0-1. Change-Id: I611505daf4d4f0940405190471f443d99102c2b9 Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-12-02gnu: nss-rapid: Update to 3.107.Ian Eure
* gnu/packages/nss.scm (nss-rapid): Update to 3.107. Change-Id: I05c6e9c6633ed222d26b76ae5def35179f31f317 Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-12-02gnu: redis: Update to 7.2.6.Hilton Chain
* gnu/packages/databases.scm (redis): Update to 7.2.6. [arguments]<#:phases>: Update failing tests. Change-Id: Ife107541697fda4f0928497560871f8ffb07d445
2024-12-01etc: Add upgrade manifest.Ludovic Courtès
* guix/scripts/build.scm (dependents): Export. * etc/upgrade-manifest.scm: New file. * Makefile.am (EXTRA_DIST): Add it. Change-Id: I1b2a2ebd09e559c68da9f25772bf33caacb4c031
2024-12-01transformations: Add #:authenticate? to ‘package-with-upstream-version’.Ludovic Courtès
* guix/transformations.scm (upstream-source-without-signatures): New procedures. (package-with-upstream-version): Add #:authenticate? and honor it. Change-Id: Ib86feb765f57bc1b129e813780abc605c43ed97b
2024-12-01transformations: ‘package-with-upstream-version’ can preserve patches.Ludovic Courtès
* guix/transformations.scm (upstream-fetch): New procedure. (package-with-upstream-version): Add #:preserve-patches? and honor it. Change-Id: Ib56b84957d8bdad2eebe2551e2a6e477506fc55e
2024-12-01guix build: Validate that the file passed to ‘-m’ returns a manifest.Ludovic Courtès
* guix/scripts/build.scm (options->things-to-build)[ensure-manifest]: New procedure. Use it. Change-Id: If64c483d7079f441a296d5bd4e06e67f44cbb7bf
2024-12-01gnu-maintenance: ‘generic-html’ update honors <base href="…">.Ludovic Courtès
This fixes updates of ‘curl’: <https://curl.se/download/> includes <base href="…"> in its head and ignoring it would lead to incorrect download URLs. * guix/gnu-maintenance.scm (html-links): Keep track of <base href="…"> in ‘loop’. Rewrite relative links at the end. Change-Id: I989da78df3431034c9a584f8e10cad87ae6dc920
2024-12-01gnu: git-minimal: Add ‘upstream-name’ property.Ludovic Courtès
* gnu/packages/version-control.scm (git-minimal)[properties]: Add ‘upstream-name’. Change-Id: I2d2516003b7f686852a3531859d06ca7f4e4820d
2024-12-01gnu: gnutls: Change release monitoring URL.Ludovic Courtès
* gnu/packages/tls.scm (gnutls)[properties]: Change release monitoring URL. Add ‘upstream-name’. Change-Id: If6ee941246b130914ddf7ca11c074a9547b9d739
2024-12-01gnu: Update updater properties for GnuPG-related packages.Ludovic Courtès
* gnu/packages/gnupg.scm (libgpg-error)[properties]: Remove. (libgcrypt)[properties]: Remove. (libassuan)[properties]: Remove. (libksba)[properties]: Remove. (npth)[properties]: Remove. (gnupg)[properties]: Remove. (gpgme)[properties]: Remove. (pinentry-tty)[properties]: Change for ‘generic-html’. (gpa)[properties]: Remove. Change-Id: I1eb9d6ad5bb3ecbfbef3d44dbae281a3de7ebac7
2024-12-01gnu-maintenance: ‘gnu-ftp’ updater excludes GnuPG-hosted packages.Ludovic Courtès
Since ftp://ftp.gnupg.org no longer exists, another updater should be used for packages with code fetched from mirror://gnupg. * guix/gnu-maintenance.scm (gnupg-hosted?): New procedure. (%gnu-ftp-updater): Exclude packages that match ‘gnupg-hosted?’. * guix/download.scm (%mirrors): Remove ftp://ftp.gnupg.org. Change-Id: I653877ad843da60281d3a234acc85743bee64856
2024-12-01import: gnome: Keep going upon HTTP errors.Ludovic Courtès
* guix/import/gnome.scm (import-gnome-release): Do not re-raise condition C, emit a warning instead. Change-Id: I9a7c337a17d1f7ed4677398e7b0f383befca7d74
2024-12-01guix build: Add ‘--dependents’.Ludovic Courtès
* guix/scripts/build.scm (show-help, %options): Add ‘--dependents’. (dependents): New procedure. (options->things-to-build): Add ‘store’ parameter; honor ‘dependents’ option. [for-type]: Handle ‘dependents’ type. (options->derivations): Update call to ‘options->things-to-build’. * tests/guix-build.sh: Add test. * doc/guix.texi (Additional Build Options): Document ‘--dependents’. (Invoking guix refresh): Cross-reference it. * doc/contributing.texi (Submitting Patches): Mention it. Change-Id: I00b6d5831e1f1d35dc8b84a82605391d5a8f417c
2024-12-01packages: Factorize ‘all-packages’.Ludovic Courtès
* gnu/packages.scm (all-packages): New procedure. * etc/source-manifest.scm (all-packages): Remove. * guix/scripts/graph.scm (all-packages): Remove. * guix/scripts/refresh.scm (all-packages): Remove. * guix/scripts/weather.scm (all-packages): Remove. Change-Id: I6072952c4b877b541037ce86402cfb7744eeb0a0
2024-12-01guix build: Add ‘--development’ option.Ludovic Courtès
* guix/scripts/build.scm (show-help, %options): Add ‘-D’. (options->things-to-build): Change ‘append-map’ to a loop. Honor ‘-D’. * tests/guix-build.sh: Add test. * doc/guix.texi (Additional Build Options): Document it. Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Change-Id: I99227aadfe861e43c001a4872292bd687b37f5d4
2024-12-01gnu-maintenance: Savannah/Xorg updaters no longer abort on network errors.Ludovic Courtès
Previously these updaters would fail upon networking error, causing the whole process to abort: $ guix refresh coreutils libgcrypt guix refresh: error: connect*: Connection refused * guix/gnu-maintenance.scm (import-release*, import-xorg-release): Wrap in ‘false-if-networking-error’. Change-Id: I8d309bf8662e2d46460585b4a1b7da0a4f2e8907
2024-12-01gnu-maintenance: ‘import-html-release’ doesn’t abort upon HTTP 404.Ludovic Courtès
Previously, updaters using ‘import-html-release’ would throw to 'quit when the HTML page isn’t found, aborting the whole process: $ guix refresh coreutils libchop guix refresh: error: https://de.freedif.org/savannah//libchop/: HTTP download failed: 404 ("Not Found") * guix/gnu-maintenance.scm (url->links): Guard against ‘http-get-error?’ and return the empty list when it is raised. Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Change-Id: I419ff96ddb424aa8c74d6bab3d66a5e85355c3dc
2024-12-01transformations: Export ‘package-with-upstream-version’.Ludovic Courtès
* guix/transformations.scm (package-with-upstream-version): Export. Change-Id: I8e09e69e9c32bffc329c97ef1c0258f750181b11
2024-12-01gnu: ucx: Enable building on riscv64-linux.Efraim Flashner
* gnu/packages/fabric-management.scm (ucx)[supported-systems]: Add riscv64-linux. Change-Id: I84d506c3ebfd8d4d237a6545ba125f4a037fa821
2024-12-01gnu: ucx: Fix building on powerpc64le-linux.Efraim Flashner
* gnu/packages/fabric-management.scm (ucx)[source]: Add snippet to add missing include file. Change-Id: I65a0d6e57a2728013030f3f344305744fa913390
2024-12-01bootloader: u-boot: Add procedure to share installer code.Herman Rimm
* gnu/bootloader/u-boot.scm (make-u-boot-installer): Add procedure. (install-u-boot-ts7970-q-2g-1000mhz-c-u-boot, install-qemu-riscv64-u-boot): Remove variables. (install-starfive-visionfive2-uEnv.txt, u-boot-ts7970-q-2g-1000mhz-c-bootloader, u-boot-qemu-riscv64-bootloader): Use make-u-boot-installer. Change-Id: I0b0b507925a7c8ca608f7307d442d9588862ae91 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-12-01bootloader: grub: Add procedure to share EFI installer code.Herman Rimm
* gnu/bootloader/grub.scm (make-grub-efi-bootloader): Add procedure. (install-grub-efi, install-grub-efi32): Remove variables. (install-grub-efi-removable): Deprecate variable. Change-Id: Ie10b506bb1088179d459ddafe3229fd730ac45aa Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-12-01gnu: openmpi@5: Update to 5.0.6.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi-5): Update to 5.0.6. Change-Id: I1aed5f0e76d64a215c4a13f445628ec206e31acf
2024-12-01gnu: rdma-core: Update to 54.0.Ludovic Courtès
* gnu/packages/linux.scm (rdma-core): Update to 54.0. Change-Id: I7f10ec57a1cad585abb08bdc30bd9e2aaafe7624
2024-12-01gnu: ucx: Update to 1.17.0.Ludovic Courtès
* gnu/packages/fabric-management.scm (ucx): Update to 1.17.0. * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Rebase. Change-Id: I2089de93da88f4f81c4b233eb03abae1f41dfe7f
2024-12-01Revert "gnu: ucx: Update to 1.17.0."Ludovic Courtès
This reverts commit 7c36577cdec8185ea7df608eb9a68424e19ee9cb, which broke unit tests running in the chroot build environment. For instance, tests of ‘hdf5-parallel-openmpi’ would fail with: Testing ../../src/h5diff/ph5diff -c 1_vds.h5 2_vds.h5 *FAILED* ====Expected result (expect_sorted) differs from actual result (actual_sorted) *** expect_sorted 2024-12-01 16:41:03.795879595 +0000 --- actual_sorted 2024-12-01 16:41:03.791879542 +0000 *************** *** 1,3 **** --- 1,15 ---- Not comparable: </vds_dset> has rank 3, dimensions [5x18x8], max dimensions [18446744073709551615x18x8] Warning: </vds_dset> or </vds_dset> is a virtual dataset + [1733071262.437780] [localhost:33263:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory + [1733071262.468994] [localhost:33247:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory + [1733071262.479911] [localhost:33242:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory Change-Id: I9c08d3c5375a2abd7d78344dfbef9b407828d1e0
2024-12-01gnu: icedove: Update to 115.16.3.Jonathan Brielmaier
* gnu/packages/gnuzilla.scm (icedove): Update to 115.16.3. Change-Id: I076e670a5442a910ac6d5aeb7ed8f64236442062
2024-12-01gnu: openmpi-5: Don't force building with ucx.Efraim Flashner
* gnu/packages/mpi.scm (openmpi-5)[inputs]: Use inherited inputs to only add ucx when it is supported. [arguments]: Only add configure-flag for ucx when it is included as an input. Change-Id: I4a5fc86999ffbafdb99bd68c170fc7a1fa6a33a5
2024-12-01gnu: ucx: Update to 1.17.0.Efraim Flashner
* gnu/packages/mpi.scm (ucx): Update to 1.17.0. [source]: Remove patch. Add snippet to add missing header. [supported-systems]: Add riscv64-linux. * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Change-Id: I56db18f32ec0baa8439a31a1781763f318e8726e
2024-12-01gnu: libfabric: Check for transitive supported packages.Efraim Flashner
* gnu/packages/linux.scm (libfabric)[inputs]: Adjust if-supported function to check the package-transitive-supported-systems. Change-Id: I47d14b08906753d20f6f2a7ab4068a9e84319350
2024-12-01gnu: cassini-headers: Limit supported systems.Efraim Flashner
* gnu/packages/linux.scm (cassini-headers)[supported-systems]: New field. Change-Id: I44efa95de527099774abb57da78410c627fdc968
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