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2023-09-13gnu: r-rstan: Update to 2.26.23.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstan): Update to 2.26.23. [native-inputs]: Remove pandoc. [propagated-inputs]: Add r-quickjsr.
2023-09-13gnu: r-iheatmapr: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.0. [source]: Delete minified plotly JavaScript. [native-inputs]: Add esbuild and js-plotly. [arguments]: Add phase to minify plotly.js.
2023-09-13gnu: r-leaflet: Update to 2.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-leaflet): Update to 2.2.0. [source]: Do not delete jquery.min.js, because it is no longer included. [arguments]: Adjust minification accordingly. [native-inputs]: Remove js-jquery. [propagated-inputs]: Remove r-base64enc and r-markdown; add r-jquerylib and r-xfun.
2023-09-13gnu: python-hicmatrix: Remove custom 'check phase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-hicmatrix)[arguments]: Remove custom 'check phase.
2023-09-13gnu: r-radiant-data: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-radiant-data): Update to 1.6.1. [propagated-inputs]: Add r-arrow.
2023-09-13gnu: r-arrow: Update to 13.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-arrow): Update to 13.0.0.
2023-09-13gnu: apache-arrow: Update to 13.0.0.Ricardo Wurmus
* gnu/packages/databases.scm (apache-arrow): Update to 13.0.0.
2023-09-13gnu: r-minqa: Update to 1.2.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-minqa): Update to 1.2.6. [inputs]: Move gfortran from here... [native-inputs]: ...to here.
2023-09-13gnu: r-dt: Update to 0.29.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dt): Update to 0.29. [propagated-inputs]: Add r-httpuv.
2023-09-13gnu: python-hicmatrix: Remove syntax error in setup.py.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (python-hicmatrix)[arguments]: Add phase remove-invalid-syntax. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-09-13gnu: Add r-quickjsr.Ricardo Wurmus
* gnu/packages/cran.scm (r-quickjsr): New variable.
2023-09-13upstream: Compare symbols to symbols.Ricardo Wurmus
The UNCHANGED? comparison would always yield #FALSE, because we have been comparing lists of strings with lists of symbols. * guix/upstream.scm (update-package-inputs): Convert string labels to symbols before comparison.
2023-09-13gnu: octave-cli: Update to 8.3.0Andy Tai
* gnu/packages/maths.scm (octave-cli): Update to 8.3.0 Signed-off-by: Eric Bavier <bavier@posteo.net>
2023-09-13gnu: nyxt: Update to 3.7.0.Andre A. Gomes
* gnu/packages/web-browsers.scm (nyxt): Update to 3.7.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-09-13gnu: cl-nasdf: Update to 0.1.8.Andre A. Gomes
* gnu/packages/lisp-xyz.scm (sbcl-nasdf): Update to 0.1.8. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-09-13gnu: cl-njson: Update to 1.2.0.Artyom Bologov
* gnu/packages/lisp-xyz.scm (sbcl-njson): Update to 1.2.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-09-13gnu: Add r-interactivedisplay.Navid Afkhami
* gnu/packages/bioconductor.scm (r-interactivedisplay): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-09-13gnu: hdf4, hdf4-alt: Update to 4.2.16-2.Andreas Enge
* gnu/packages/maths.scm (hdf4)[source]: Update to 4.2.16-2. Drop patches that do not apply any more. [arguments]: Drop configure flag related to libtirpc. Add configure flag to build xdr library and drop unneeded substitutions. * gnu/packages/patches/hdf4-architectures.patch, gnu/packages/patches/hdf4-tirpc.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Unregister patches.
2023-09-13gnu: yoyo-migrations: Update to 8.2.0.Munyoki Kilyungi
* gnu/packages/databases.scm (yoyo-migrations): Update to 8.2.0. [propagated-inputs]: Add python-importlib-metadata. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13gnu: libvterm: Update arguments style.Zheng Junjie
* gnu/packages/terminals.scm (libvterm)[arguments]: Update arguments style. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13gnu: libvterm: Update to 0.3.3.Zheng Junjie
* gnu/packages/terminals.scm (libvterm): Update to 0.3.3. [source]: Use launchpad.net url. [arguments]: Use CC-FOR-TARGET. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13gnu: tennix: Update to 1.3.4.Hendursaga
* gnu/packages/games.scm (tennix): Update to 1.3.4. [arguments]<#:phases>: Update style and remove fix-include phase. [inputs]: Remove labels, update to SDL2, add SDL2_gfx dependency. [license]: Remove LGPL license, as SDL_rotozoom is no longer included. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13gnu: python-qtsass: Update to 0.4.0.Sharlatan Hellseher
This also fixes test failures preventing the package from building. * gnu/packages/python-xyz.scm (python-qtsass): Update to 0.4.0, fix build. [native-inputs]: Add python-flaky. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13gnu: python-libsass: Update to 0.22.0.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-libsass): Update to 0.22.0. [phases]: Add new phase 'silent-failing-tests and disable 2 failing tests to complete build. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-13gnu: emilua: Update to 0.4.3.Valter Nazianzeno
* gnu/packages/lua.scm (emilua): Update to 0.4.3. [source]: Remove recursive? and replace with inputs. [arguments]: Update style, add patch phase, enable tests and enable some more features. [native-inputs]: Add gperf, gawk and xdd. [inputs]: Add emilua-http and trial-protocol as origin is no longer recursive, also add serd, sord, libcap and liburing. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-12gnu: Add swineherd.Ricardo Wurmus
* gnu/packages/admin.scm (swineherd): New variable.
2023-09-12gnu: python-django-4.0: Use $TZDIR.Maxim Cournoyer
* gnu/packages/django.scm (python-django-4.0) [native-search-paths]: Use $TZDIR.
2023-09-12search-paths: Add $TZDIR.Maxim Cournoyer
* guix/search-paths.scm ($TZDIR): New search path.
2023-09-12gnu: qemu: Reinstate the iothreads-commit-active test.Maxim Cournoyer
* gnu/packages/virtualization.scm (qemu) [arguments]: Add set-SOCK_DIR phase. (qemu-minimal) [arguments]: Delete the disable-extra-tests phase.
2023-09-12gnu: Add python-peaks2utr.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-peaks2utr): New variable.
2023-09-12gnu: macs: Update to 2.2.9.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (macs): Update to 2.2.9.1. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase. [native-inputs]: Move python-cython from here... [inputs]: ...and python-numpy from here... [propagated-inputs]: ...to here.
2023-09-12gnu: xfce4-terminal: Update to 1.1.0.宋文武
* gnu/packages/xfce.scm (xfce4-terminal): Update to 1.1.0. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-12gnu: guile-png: Update to 0.7.1Artyom V. Poptsov
* gnu/packages/guile-xyz.scm (guile-png): Update to 0.7.1. [arguments]: Update style and delete "strip" phase. [description]: Update. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-12gnu: python-cgatcore: Update to 0.6.15.Hilton Chain
* gnu/packages/bioinformatics.scm (python-cgatcore): Update to 0.6.15. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-12gnu: python-apsw: Update to 3.42.0.1.Hilton Chain
* gnu/packages/databases.scm (python-apsw): Update to 3.42.0.1. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-12gnu: sqlite-next: Update to 3.42.0.Hilton Chain
* gnu/packages/sqlite.scm (sqlite-next): Update to 3.42.0. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-12gnu: svt-av1: Update to 1.7.0.Andy Tai
* gnu/packages/video.scm (svt-av1): Update to 1.7.0. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-09-12gnu: nar-herder: Use guile-next.Christopher Baines
As this provides suspendable soft/custom ports, which I'd like to use. * gnu/packages/package-management.scm (nar-herder)[native-inputs,inputs]: Use guile-next.
2023-09-12gnu: skalibs: Remove i586-gnu from %supported-systems.Christopher Baines
* gnu/packages/skarnet.scm (skalibs)[supported-systems]: Remove i586-gnu.
2023-09-12gnu: linux-libre-headers: Remove i586-gnu from supported-systems.Christopher Baines
As I don't think attempting to build for the Hurd is useful. * gnu/packages/heads.scm (make-linux-libre-headers*): Remove i586-gnu from supported-systems.
2023-09-12gnu: musl-cross: Remove i586-gnu from supported-systems.Christopher Baines
As I don't think musl supports the Hurd. * gnu/packages/heads.scm (musl-cross)[supported-systems]: Remove i586-gnu.
2023-09-11gnu: emacs-magit: Update to 3.3.0-6.7a1d503.Maxim Cournoyer
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.3.0-6.7a1d503.
2023-09-11gnu-maintenance: Support URI list of mixed mirrors, HTTP URLs.Maxim Cournoyer
This reinstate commit a5b5df7f7fbbb98487b2e7a59941efee6492bc7f with a fix to the inner expand-uri procedure.
2023-09-11Revert "gnu-maintenance: Support URI list of mixed mirrors, HTTP URLs."Maxim Cournoyer
This reverts commit a5b5df7f7fbbb98487b2e7a59941efee6492bc7f. Pushed too early.
2023-09-11gnu-maintenance: Support URI list of mixed mirrors, HTTP URLs.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/58697>. * guix/gnu-maintenance.scm (import-html-updatable-release): Update doc. <expand-uri>: New nested procedure. Apply it to the origin URI. Reported-by: kiasoc5 <kiasoc5@disroot.org>
2023-09-11gnu: emacs-mastodon: Update to 1.0.0-1.20dec88.Cayetano Santos
* gnu/packages/emacs-xyz.scm (emacs-mastodon): Update to 1.0.0-1.20dec88. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-11gnu: Add picket.Sergio Pastor Pérez
* gnu/packages/image.scm (picket): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-09-11gnu: Add mini.Sergio Pastor Pérez
* gnu/packages/image.scm (mini): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-09-11gnu: emacs-php-mode: Update URL.Ludovic Courtès
* gnu/packages/emacs-xyz.scm (emacs-php-mode)[source, home-page]: Update URL and factorize it. Co-authored-by: Piotr Kwiecinski <piokwiecinski@gmail.com>
2023-09-11gnu: Add emacs-notmuch-indicator.Fabio Natali
* gnu/packages/emacs-xyz.scm (emacs-notmuch-indicator): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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