| Age | Commit message (Expand) | Author |
|---|
| 2024-12-03 | gnu: r-variancepartition: Add missing inputs....* gnu/packages/bioconductor.scm (r-variancepartition)[native-inputs]: Add
r-edger and r-rfast.
Change-Id: I5b9bd4e378d0e7dbd5bc3efc67b96bd1beb563b1
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-annotationhub: Disable tests....* gnu/packages/bioconductor.scm (r-annotationhub)[arguments]: Disable tests.
Change-Id: I00a9778eb5d8cd031b956c583f12f42921fec4e2
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-treeio: Add missing inputs....* gnu/packages/bioconductor.scm (r-treeio)[native-inputs]: Add r-igraph and
r-xml2.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I0c5e8ef566acbc8593c6c27a6cc7776778937876
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-gofuncr: Add missing inputs....* gnu/packages/bioconductor.scm (r-gofuncr)[native-inputs]: Add r-homo-sapiens.
Change-Id: I66d6e9985fc420c93eaf77afa348b7bbd29381c7
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-organismdbi: Disable tests....* gnu/packages/bioconductor.scm (r-organismdbi)[arguments]: Disable tests.
Change-Id: I1a669db2ffc8f9e5bf00666bdfbc53a060508dc6
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-txdbmaker: Add test inputs....* gnu/packages/bioconductor.scm (r-txdbmaker)[native-inputs]: Add r-rmariadb.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I22fe422410a41998e4fa3552cfaa1dba3e245c10
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-rmariadb....* gnu/packages/cran.scm (r-rmariadb): New variable.
Change-Id: I12ec88bb93170b4d59f62e3d89bf3d0e110b0eae
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-biomart: Add test inputs....* gnu/packages/bioconductor.scm (r-biomart)[native-inputs]: Add r-httptest2
and r-mockery.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I07aacb1f73a8afd49a1645da8c1bf2d22dde7873
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-httptest2....* gnu/packages/cran.scm (r-httptest2): New variable.
Change-Id: Iaaf40d07c1bea2213359857eeae86eeead90fbc4
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-webfakes....* gnu/packages/cran.scm (r-webfakes): New variable.
Change-Id: Ia7bcf571bfbefe046b6fbd129a969fd118cf0760
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-metagenomeseq: Add test inputs....* gnu/packages/bioconductor.scm (r-metagenomeseq)[native-inputs]: Add
r-testthat.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I702d02695fe0b078bd2b97b958a0bbde73d0c2d5
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-ioniser: Add missing inputs....* gnu/packages/bioconductor.scm (r-ioniser)[native-inputs]: Add
r-minionsummarydata.
Change-Id: Ie478db21c33c6d279937678b8103cca5df228a09
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-minionsummarydata....* gnu/packages/bioconductor.scm (r-minionsummarydata): New variable.
Change-Id: I61318a1338bbff117e38d3ce5963dd061e5175a9
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-rnacrosslinkoo: Add missing inputs....* gnu/packages/bioinformatics.scm (r-rnacrosslinkoo)[native-inputs]: Add
r-testthat.
Change-Id: Iedd2dee7a32dcd19a99d25d92b6f453dd197f5b4
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-glimma: Add missing inputs....* gnu/packages/bioconductor.scm (r-glimma)[native-inputs]: Add r-pryr.
Change-Id: I9109cc636e758df436aaae38c3b2bd735b1e4cc0
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-systempiper: Add missing inputs and disable tests....* gnu/packages/bioconductor.scm (r-systempiper)[native-inputs]: Add
r-systempiperdata.
[arguments]: Disable tests.
Change-Id: Ic071bbcb53ef9fb96385fbbdb5725ed2a4490db7
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-roar: Add missing inputs....* gnu/packages/bioconductor.scm (r-roar)[native-inputs]: Add
r-rnaseqdata-hnrnpc-bam-chr14.
Change-Id: Ic5fa181d52e87ba7039e0000f5610eb46150bbfc
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-systempiperdata....* gnu/packages/bioconductor.scm (r-systempiperdata): New variable.
Change-Id: I125e8003073ffc5fa7f20d3efa0f3ead71eaafe3
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-sgseq: Add missing inputs....* gnu/packages/bioconductor.scm (r-sgseq)[native-inputs]: Add
r-bsgenome-hsapiens-ucsc-hg19.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I5ff9e2af754700e5ba70ad7bdd1be5ec952946a3
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-rnaseqdata-hnrnpc-bam-chr14....* gnu/packages/bioconductor.scm (r-rnaseqdata-hnrnpc-bam-chr14): New variable.
Change-Id: If2f9bf10e3e1396cfd31e3278020d623ce2253e0
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-bedtorch: Disable tests....* gnu/packages/bioinformatics.scm (r-bedtorch)[arguments]: Disable tests.
[native-inputs]: Add r-testthat.
Change-Id: Ia06aca330528eb2b9eea569d5d12db0f12d6511e
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-bioqc: Add missing inputs....* gnu/packages/bioconductor.scm (r-bioqc)[native-inputs]: Add r-ineq.
Change-Id: I090a0d25f87d23119e66a69ca37c16d7b384a01a
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-organism-dplyr: Add missing inputs....* gnu/packages/bioconductor.scm (r-organism-dplyr)[native-inputs]: Add
r-txdb-hsapiens-ucsc-hg38-knowngene and r-txdb-mmusculus-ucsc-mm10-ensgene.
Change-Id: I1dbf8d71f9a29d1a95e70a4b44042155af4a1222
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-genomicdatacommons: Delete bad tests....* gnu/packages/bioconductor.scm (r-genomicdatacommons)[arguments]: Add phase
'delete-bad-tests.
Change-Id: I9e09a99cc3e07d4d3a568d1058c717a74de925bc
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-txdb-mmusculus-ucsc-mm10-ensgene....* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-ensgene): New variable.
Change-Id: I5caa7d292ea0f81df5acf3f522fd3cf1ca9acb13
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-ctrdata: Fix vignettes....* gnu/packages/cran.scm (r-ctrdata)[arguments]: Add phase 'set-HOME.
Change-Id: I0191e69b9970fd0fe2c85dffa19839b94760befd
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-megadepth: Add missing inputs and disable tests....* gnu/packages/bioconductor.scm (r-megadepth)[propagated-inputs]: Add
megadepth.
[arguments]: Disable tests.
[inputs]: Remove empty field.
[properties]: Tell updater to keep megadepth as a propagated input.
Change-Id: Idbbc371c2d66aa7c0d7e2add13fa35a5b4f9cd77
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-alpine: Add missing inputs....* gnu/packages/bioconductor.scm (r-alpine)[native-inputs]: Add r-testthat.
Change-Id: I0dece0c9def13b5aed392b0a8404ee96e3d57ab5
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-tgutil: Add missing inputs....* gnu/packages/statistics.scm (r-tgutil)[native-inputs]: Add r-testthat.
Change-Id: Idb64f13cfcd01db56362fb77c4aca41095e4cf0a
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-biocdockermanager: Add missing inputs....* gnu/packages/bioconductor.scm (r-biocdockermanager)[native-inputs]: Add
r-testthat.
Change-Id: I22918f6024bcd2e31f7707ee2dcd2a98061a6136
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-motifdb: Add missing inputs....* gnu/packages/bioconductor.scm (r-motifdb)[native-inputs]: Add r-seqlogo.
Change-Id: I4a2316e35ba4b2c79f01edb1d887702102b1106c
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-dittoseq: Add missing inputs....* gnu/packages/bioconductor.scm (r-dittoseq)[native-inputs]: Add
r-complexheatmap, r-deseq2, r-edger r-ggplot-multistats, r-ggrastr, and
r-plotly.
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-vipor: Disable vignettes....* gnu/packages/statistics.scm (r-vipor)[arguments]: Disable vignettes.
Change-Id: I58c8e4b7b7eb6d6f1693f34199721fd0bcbf6c82
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-presto: Add missing inputs....* gnu/packages/bioconductor.scm (r-presto)[native-inputs]: Add r-testthat.
Change-Id: I3fe5ec83478e384fe34701b0672b6f216255b1d6
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-complexheatmap: Add missing inputs....* gnu/packages/bioconductor.scm (r-complexheatmap)[native-inputs]: Add
r-dendextend, r-genomicranges, and r-gridtext.
Change-Id: If306ccd62519e8af3314b6aadcac3a34f08d9138
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-fishpond: Add missing inputs....* gnu/packages/bioconductor.scm (r-fishpond)[native-inputs]: Add r-data-table,
r-deseq2, and r-samr.
Change-Id: I5e3c827f274a20ff410287f39b3a57de66b77f01
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-psiplot: Add missing inputs....* gnu/packages/bioinformatics.scm (r-psiplot)[native-inputs]: Add r-testthat.
Change-Id: I19ad7216f86968c87abad64313bf09d03e3ad612
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-geoquery: Disable tests....* gnu/packages/bioconductor.scm (r-geoquery)[arguments]: Disable tests.
Change-Id: Ibd30534cfb1f6bd4927f16908a749dd1881932e4
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-productplots: Add missing inputs....* gnu/packages/cran.scm (r-productplots)[native-inputs]: Add r-reshape2.
Change-Id: Id1604a4859b2fef076dd1485b25ae185175173e0
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-annotationforge: Add missing inputs....* gnu/packages/bioconductor.scm (r-annotationforge)[native-inputs]: Add
r-go-db.
Change-Id: Ie1b824fd4215e6583fd561b5d959dec52ce19eaa
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-greylistchip: Add missing inputs....* gnu/packages/bioconductor.scm (r-greylistchip)[native-inputs]: Add
r-biocstyle.
Change-Id: I65ce2be5b87171bf752da4181dbf8eea1f2d50c3
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-omnipathr/devel: Add missing inputs....* gnu/packages/bioinformatics.scm (r-omnipathr/devel)[native-inputs]: Add
r-testthat.
Change-Id: I7e339871d65ed0ff263db14ff9fb0aa1bb3ed0bb
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-pcatools: Add missing inputs....* gnu/packages/bioconductor.scm (r-pcatools)[native-inputs]: Add r-scran.
Change-Id: Ie815aa731b3ef52560315bd040eca42f69f3f890
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-sva: Add missing inputs....* gnu/packages/bioconductor.scm (r-sva)[native-inputs]: Add r-biocstyle,
r-bladderbatch, r-pamr, and r-zebrafishrnaseq.
Change-Id: Ie97432eec92258c680814a45ff842c17674c3ecc
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-zebrafishrnaseq....* gnu/packages/bioconductor.scm (r-zebrafishrnaseq): New variable.
Change-Id: I5fe044acef56aba8601fea9cc766bbf69594714b
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-mlinterfaces: Add missing inputs....* gnu/packages/bioconductor.scm (r-mlinterfaces)[native-inputs]: Add
r-golubesets.
Change-Id: I509c44b49974c423ce138db74dc0275de5a6570d
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-oligodata....* gnu/packages/bioconductor.scm (r-oligodata): New variable.
Change-Id: I605b877f91c068180c55da5ecbbd62b6071fde3c
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-pd-mapping50k-hind240....* gnu/packages/bioconductor.scm (r-pd-mapping50k-hind240): New variable.
Change-Id: I11680ac9b36494565f22f83cc4cae49f8d751b13
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-oligo: Disable tests....* gnu/packages/bioconductor.scm (r-oligo)[arguments]: Disable tests.
Change-Id: Ief8655fed61142efa86cdf0170e417fde2f4c617
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-oligoclasses: Disable tests....* gnu/packages/bioconductor.scm (r-oligoclasses)[arguments]: Disable tests.
Change-Id: I0f8513449464a7fce0a353bcaf62b67bc58f31fe
| Ricardo Wurmus |
