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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-11-26 11:43:29 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-12-03 16:59:42 +0100 |
| commit | 7cc00303ec4563bf9444e8708408cdece8873ae2 (patch) | |
| tree | 8ac6a29e21a4b1e187c75acca468700b2fdcc7f3 | |
| parent | af70af3529235dda3e5aad08cfc5389aeda09be8 (diff) | |
| download | guix-7cc00303ec4563bf9444e8708408cdece8873ae2.tar.gz guix-7cc00303ec4563bf9444e8708408cdece8873ae2.zip | |
gnu: r-sgseq: Add missing inputs.
* gnu/packages/bioconductor.scm (r-sgseq)[native-inputs]: Add
r-bsgenome-hsapiens-ucsc-hg19.
[arguments]: Add phase 'delete-bad-tests.
Change-Id: I5ff9e2af754700e5ba70ad7bdd1be5ec952946a3
| -rw-r--r-- | gnu/packages/bioconductor.scm | 10 |
1 files changed, 9 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 9acf6c3cde..372996019b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -18967,6 +18967,14 @@ alignment tool.") "1xchrzd384wzm81vzrcixyzn3mgnd343cp544yvfzfn2vxr4y1ij")))) (properties `((upstream-name . "SGSeq"))) (build-system r-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'delete-bad-tests + (lambda _ + ;; This test attempts to download a data file. + (delete-file "inst/unitTests/test_predictVariantEffects.R")))))) (propagated-inputs (list r-annotationdbi r-biocgenerics @@ -18983,7 +18991,7 @@ alignment tool.") r-s4vectors r-summarizedexperiment)) (native-inputs - (list r-knitr r-runit)) + (list r-bsgenome-hsapiens-ucsc-hg19 r-knitr r-runit)) (home-page "https://bioconductor.org/packages/SGSeq/") (synopsis "Splice event prediction and quantification from RNA-seq data") (description |