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2024-01-17gnu: r-ggvenndiagram: Update to 1.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggvenndiagram): Update to 1.5.0. [propagated-inputs]: Remove r-tidyr; add r-venn and r-yulab-utils. Change-Id: Ic065aaf5f8e62f8c1f23e6c845dde88bbc682f69
2024-01-17gnu: r-proj4: Update to 1.0-14.Ricardo Wurmus
* gnu/packages/cran.scm (r-proj4): Update to 1.0-14. Change-Id: I97575fc9f094b0e3cedb33dc83bbea286ed6c63d
2024-01-17gnu: r-ggstatsplot: Update to 0.12.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggstatsplot): Update to 0.12.2. Change-Id: Iafe26006e36b482da64afa5c1ae88176ba2590d0
2024-01-17gnu: r-cplm: Update to 0.7-12.Ricardo Wurmus
* gnu/packages/cran.scm (r-cplm): Update to 0.7-12. Change-Id: I59dee59bdf25589ffe866f69996facfe39234b39
2024-01-17gnu: r-collapse: Update to 2.0.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-collapse): Update to 2.0.9. Change-Id: I748bd138cb79ea3af4d90788544e8f1cecb91440
2024-01-17gnu: Add r-venn.Ricardo Wurmus
* gnu/packages/cran.scm (r-venn): New variable. Change-Id: I6ec3e890cab6e9042686148b7c52988f0dbb878e
2024-01-17gnu: python-snaptools: Disable tests.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-snaptools)[arguments]: Disable tests. Change-Id: I4934bda3cfbaf42a87f57035ec12d084112dcc24
2024-01-17gnu: Add linux-libre 6.7.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-6.7-version, linux-libre-6.7-gnu-revision, deblob-scripts-6.7, linux-libre-6.7-pristine-source, linux-libre-6.7-source, linux-libre-headers-6.7, linux-libre-6.7): New variables. * gnu/packages/aux-files/linux-libre/6.7-arm.conf, gnu/packages/aux-files/linux-libre/6.7-arm64.conf, gnu/packages/aux-files/linux-libre/6.7-i686.conf, gnu/packages/aux-files/linux-libre/6.7-x86.conf: New files. * Makefile.am (AUX_FILES): Add them. * Makefile.am: Update my copyright header. Change-Id: I88b633933875f64bd2859774419e077d8f36d75b Signed-off-by: Leo Famulari <leo@famulari.name>
2024-01-17gnu: gmid: Update to 2.0.cage
* gnu/packages/web.scm (gmid): Update it. Change-Id: I8f1bcd36130a63d07e934093b5b12cc01a6d5022 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-17gnu: perl-image-exiftool: Update to 12.70.kiasoc5
* gnu/packages/photo.scm (perl-image-exiftool): Update to 12.70. Change-Id: If8e26b7e92cb530391cdd1dd12e78b371494a6b3
2024-01-17gnu: Add go-github-com-charmbracelet-harmonica.Artyom V. Poptsov
* gnu/packages/golang.scm (go-github-com-charmbracelet-harmonica): New variable. Change-Id: I7e08006571be4e6b21eb4df3df8f3c92a412c0ca Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-17gnu: ngtcp2: Build libngtcp2_crypto_gnutls.Tomas Volf
* gnu/packages/networking.scm (ngtcp2)[arguments]<#:configure-flags>: Add --with-gnutls. [native-inputs]: Add pkg-config. [inputs]: Add gnutls. Change-Id: Id3a9210992d203a57a9b791f3c3752f2ebd3e634 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-17gnu: ngtcp2: Update to 1.1.0.Tomas Volf
* gnu/packages/networking.scm (ngtcp2): Update to 1.1.0. Change-Id: I7f6b08952ba508207c8dedbd68c7c48dd17dd0ff Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-17gnu: Add nghttp3.Tomas Volf
* gnu/packages/web.scm (nghttp3): New variable. Change-Id: I4ed318506f6d3bdd0c47a367b1dcc1b4454c09b2 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-17gnu: web: Delete trailing whitespace.Tomas Volf
* gnu/packages/web.scm (krona-tools): Delete trailing whitespace. Change-Id: Ide601b011d3e2c3c736bf041571f9ab00b5b5b1d Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-17gnu: Add r-caic4.nafkhamdc
* gnu/packages/cran.scm (r-caic4): New variable. Change-Id: Ifdfb6e69c7d1801b347ce16b4ee48a4950963fe4 Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-01-17gnu: powertop: Correct package description.Ian Eure
* gnu/packages/linux.scm (powertop): Correct package description. Change-Id: Ifc81ed62158df8b3c235d335731590e977dcc725 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-17gnu: Add tgif.spacecadet
* gnu/packages/image.scm (tgif): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Change-Id: I4fd6bf5ae25806775e75dcca680a067f5d80ef5e
2024-01-17gnu: Add python-pandera.Troy Figiel
* gnu/packages/python-science.scm (python-pandera): New variable.
2024-01-17gnu: Add python-pandas-stubs.Troy Figiel
* gnu/packages/python-science.scm (python-pandas-stubs): New variable.
2024-01-17gnu: Add python-typeguard-4.Troy Figiel
* gnu/packages/python-xyz.scm (python-typeguard-4): New variable. Change-Id: Ic5728766e8171dc31a82056f55a8c00680db5870
2024-01-17gnu: Add python-concurrent-log-handler.Troy Figiel
* gnu/packages/python-xyz.scm (python-concurrent-log-handler): New variable.
2024-01-17gnu: Add python-pdf2image.Troy Figiel
* gnu/packages/python-xyz.scm (python-pdf2image): New variable.
2024-01-17image: Consider grub-efi-removable-bootloader to be EFI bootloader.Tomas Volf
Without this change, trying to create a system image with efi-raw type while using grub-efi-removable-bootloader fails with fairly confusing message: EFI bootloader required with GPT partitioning * gnu/system/image.scm (system-disk-image): Consider grub-efi-removable-bootloader to be EFI bootloader. Change-Id: I5f5e1a94e825fd29d6880c5bafb330e16a5ac962
2024-01-17home: fontutils: Don't install fontconfig.Efraim Flashner
* gnu/home/services/fontutils.scm (home-fontconfig-service-type): Don't add fontconfig to the profile. Change-Id: I28208461efdfa4a585ee61db3a23bed05eb38d02
2024-01-17home: services: zsh: Use unified zprofile.Efraim Flashner
* gnu/home/services/shells.scm (zsh-file-zprofile): Use the zprofile defined in (gnu system shadow) as a base. Change-Id: Iaf4c4f66d1ccbc0bd0166136b3d082229bdec201
2024-01-17system: default-zprofile: Sync with home zprofile.Efraim Flashner
The removed fields are already sourced in /etc/profile. * gnu/system/shadow.scm (%default-zprofile): Sync with default zprofile from (gnu home services shells). Change-Id: I419eadf636344e23e8fd2f7006efa81f45527756
2024-01-17system: Add default guix-home-config.Efraim Flashner
* gnu/system/shadow.scm (%deafult-skeleton-home-config): New variable. (default-skeletons): Add it. Change-Id: Ida4cca8b1b3674491a4f18d94bc1b12d426575ba
2024-01-17system: Export default guile config.Efraim Flashner
* gnu/system/shadow.scm (%default-dotguile): Extract from default-skeletons, export. (default-skeletons): Use %default-dotguile. Change-Id: Ibe91b3b517ae542bd28070a08e14152f87ed75ec
2024-01-17system: Export default nanorc.Efraim Flashner
* gnu/system/shadow.scm (%default-nanorc): Extract from default-skeletons, export. (default-skeletons): Use %default-nanorc. Change-Id: I0d07b13ed4894b1152a08b96d9ef8527dde073ce
2024-01-17system: Export default gdbinit.Efraim Flashner
* gnu/system/shadow.scm (%default-gdbinit): Extract from default-skeletons, export. (default-skeletons): Use %default-gdbinit. Change-Id: Ia5188f8083a83ad4cdb96e234dbd730b1bfe0072
2024-01-17system: Export default xdefaults.Efraim Flashner
* gnu/system/shadow.scm (%default-xdefaults): Extract from default-skeletons, export. (default-skeletons): Use %default-xdefaults. Change-Id: I44018516ec3687a68d32ca5c86c41bc29507a273
2024-01-17system: Export default zprofile.Efraim Flashner
* gnu/system/shadow.scm (%default-zprofile): Extract from default-skeletons, export. (default-skeletons): Use %default-zprofile. Change-Id: I6c6e158bca2e462a2eae709fbc2c25a2c7f3f8b4
2024-01-17system: Export default bash-profile.Efraim Flashner
gnu/system/shadow.scm (%default-bash-profile): Extract from default-skeletons, export. (default-skeletons): Use %default-bash-profile. Change-Id: I45641b1091daee3495a5f92bdc1a63050e0cc59e
2024-01-16gnu: abjad-ext-ipython: Fix build.Sharlatan Hellseher
* gnu/packages/music.scm (abjad-ext-ipython): Fix build. [propagated-inputs]: Add python-sphinx-autodoc-typehints. Change-Id: Id20c0527e61b8be194c5387c6c43fdf82ab5ff09
2024-01-16gnu: python-deepdish: Fix build.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-deepdish): Fix build. [build-system]: Swap to pyproject-build-system. [arguments]<#:test-flags>: Silent failing tests. Change-Id: I4c4df66fc80434aaf5b95a7a62b83e0c1c02a4c6
2024-01-16gnu: Add samtools-1.14.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools-1.14): New variable. Change-Id: I0bd35b3865d7a417f55f1f768f7eb0c78a795e0f
2024-01-16gnu: samtools: Update to 1.19.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools): Update to 1.19. [source]: Simplify snippet. Change-Id: If0e02bbbc8e0443eb418c078dc47525f432d7ebe
2024-01-16gnu: htslib: Update to 1.19.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htslib): Update to 1.19. Change-Id: I4d66d8ce37bfd335411a2acc6060f9a8c20c9e4a
2024-01-16gnu: htscodecs: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htscodecs): Update to 1.6.0. Change-Id: Ibd5be30e8fbe7fe5d0ef494c1b1e0cd9ec3333cc
2024-01-16gnu: Add python-prisma.Ricardo Wurmus
* gnu/packages/databases.scm (python-prisma): New variable. Change-Id: I7df9b5600fb49ef46a73678323bc29993f35fae2
2024-01-16gnu: Add python-strenum.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-strenum): New variable. Change-Id: I6b6d64024db9358ea0a65cfd6c7cd6f94747de42
2024-01-16gnu: python-readpaf: Explicitly disable tests.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-readpaf)[arguments]: Disable tests. Change-Id: I28ddfa46675b74bd5073c12e5d33bcbf9dee8252
2024-01-16gnu: python-pyls-black: Fix build.Ricardo Wurmus
* gnu/packages/patches/python-pyls-black-41.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-xyz.scm (python-pyls-black)[source]: Add patch. [build-system]: Use pyproject-build-system. [arguments]: Disable one failing test. Change-Id: I14b2982644e58c0b43d76838febc6dfceb220b15
2024-01-16gnu: debian-ports-archive-keyring: Update to 2024.01.05.Efraim Flashner
* gnu/packages/debian.scm (debian-ports-archive-keyring): Update to 2024.01.05. Change-Id: Ibaa279a91d9e39804eb5cc1bf759ca3afd69e962
2024-01-16gnu: debootstrap: Update to 1.0.134.Efraim Flashner
* gnu/packages/debian.scm (debootstrap): Update to 1.0.134. [arguments]: Remove obsolete substitution in 'patch-source phase. Change-Id: I2a50ae75a43c0970e3ef866e02c49d87094e14eb
2024-01-16gnu: gourmet: Add missing input.Ricardo Wurmus
* gnu/packages/nutrition.scm (gourmet)[inputs]: Add python-toml. Change-Id: I53bc9b0247c6dc32c5ec6e3cc518dbc982362bd2
2024-01-16gnu: python-pyrdfa3: Update to 3.6.2.Ricardo Wurmus
* gnu/packages/rdf.scm (python-pyrdfa3): Update to 3.6.2. [build-system]: Use pyproject-build-system. [arguments]: Remove custom build phases. [propagated-inputs]: Add python-requests. Change-Id: Ie8a1a369a569d29c8f43248d03f024e6cc19c004
2024-01-16gnu: python-clingraph: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/potassco.scm (python-clingraph): Update to 1.1.2. Change-Id: I5910853d39389ff9ad981543204fd8ef1445e495
2024-01-16gnu: python-astroml: Make compatible with recent Matplot and Scipy.Ricardo Wurmus
* gnu/packages/astronomy.scm (python-astroml)[arguments]: Add phases 'matplotlib-compatibility and 'scipy-compatibility. Change-Id: Id88cf769f705f9326f41f951403583155bcee58f
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