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2025-01-20gnu: python-rdflib-6: Update to 6.3.2.Ricardo Wurmus
* gnu/packages/rdf.scm (python-rdflib-6): Update to 6.3.2. [build-system]: Use pyproject-build-system. [arguments]: Use #:test-flags instead of a custom build phase; update list of disabled tests. [native-inputs]: Add python-poetry-core and python-pytest-cov. Change-Id: I0dd4ecebdf3ef04562c3a3efb37614bf5eec16f5
2025-01-20gnu: fava: Update to 1.27.Sergey Trofimov
* gnu/packages/finance.scm (fava): Update to 1.27. [arguments] <phases>: Remove 'relax-requirements, and 'set-home. [native-inputs]: Remove python-chardet, python-dateutil, and python-setuptootls-scm. Add python-babel, python-mypy, python-pytest-cov, python-setuptootls, python-twine, python-types-setuptootls, python-types-simplejson, and python-wheel. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Iee27197ece9685c500afe0dedb8ba33e02eb1ea1
2025-01-20gnu: beancount: Fix build.Sergey Trofimov
* gnu/packages/finance.scm (beancount) [native-inputs]: Add python-wheel and python-setuptools. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-01-20gnu: Add python-types-simplejson.Sergey Trofimov
* gnu/packages/python-xyz.scm (python-types-simplejson): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-01-20gnu: python-pdfminer-six: Update to 20240706.Sergey Trofimov
* gnu/packages/python-xyz.scm (python-pdfminer-six): Update to 20240706. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-01-20gnu: python-markdown2: Update to 2.5.2.Sergey Trofimov
* gnu/packages/python-xyz.scm (python-markdown2) [arguments] <phases>: Use default 'check. [native-inputs]: Add python-pytest, python-setuptools and python-wheel. Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Ic3df25863bbb37ec6282ec5dcbf815461663f8cd
2025-01-20gnu: python-flask-babel: Update to 4.0.0.Sergey Trofimov
* gnu/packages/python-web.scm (python-flask-babel): Update to 4.0.0. [source]: Fetch from git as PyPI release doesn't include tests. [build-system]: Switch to pyproject-build-system. [native-inputs]: Add python-poetry-core, python-pytest, python-pytest-cov, and python-pytest-mock. [propagated-inputs]: Sort. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I253b88eac7bec8152dc97634059c2402624cb961
2025-01-20gnu: python-babel: Update to 2.16.0.Sergey Trofimov
* gnu/packages/python-xyz.scm (python-babel): Update to 2.16.0. [source]: Adjust uri as it's changed in PyPI archive. [build-system]: Swap to pyproject-build-system. [arguments] <phases>: Use default 'check. [native-inputs]: Add python-setuptools and python-wheel. Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I32b7c5613e7db2c676745d6621f04b52a1cdf0ba
2025-01-20gnu: pyscenic: Update to 0.12.1-1.eaf23eb.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pyscenic): Update to 0.12.1-1.eaf23eb. [arguments]: Update phase 'do-not-reference-deleted-modules. [propagated-inputs]: Add python-numexpr. [native-inputs]: Add python-wheel. Change-Id: Ib1b5a7d36a24b280160befe579057a241d69455d
2025-01-20gnu: python-pydantic-2: Update to 2.7.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pydantic-2): Update to 2.7.0. [arguments]: Update tests. [native-inputs]: Add tzdata-for-tests and python-jsonschema; remove python-faker. Change-Id: I8c85598f7603c58108602c6d67aa27314dea285e
2025-01-20gnu: python-pydantic-core: Update to 2.18.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pydantic-core): Update to 2.18.1. [arguments]: Replace rust-jiter-0.0.4 with rust-jiter-0.2, rust-strum-0.25 with rust-strum-0.26, rust-strum-macros-0.25 with rust-strum-macros-0.26, and rust-speedate-0.13 with rust-speedate-0.14. [native-inputs]: Add python-typing-extensions. Change-Id: I8686509f43667484847a72972aa2dd88dbce9343
2025-01-20gnu: Add rust-jiter-0.2.Ricardo Wurmus
* gnu/packages/crates-io.scm (rust-jiter-0.2): New variable. Change-Id: I7488999f653e126e7179728d732fb0054f949bd9
2025-01-20gnu: python-annotated-types: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-annotated-types): Update to 0.7.0. Change-Id: I610b144339841768b4ce861d5457cf4184f756a2
2025-01-20gnu: macs-3: Add missing input.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (macs-3)[native-inputs]: Add python-wheel. Change-Id: I22b8d8e144434ae537af7c113f4719392933e90c
2025-01-20gnu: python-httpretty: Enable tests.Ricardo Wurmus
* gnu/packages/web.scm (python-httpretty)[arguments]: Enable most tests. [native-inputs]: Add nss-certs-for-test, python-freezegun, python-httplib2, and python-pyparsing. Change-Id: I08d2c14a2e81559d41dc38f0eeb34c2d6c59125a
2025-01-20gnu: python-dulwich: Update to 0.21.7.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-dulwich): Update to 0.21.7. [build-system]: Use pyproject-build-system. [arguments]: Use #:test-flags; fix tests after 'unpack phase, split off 'pre-check phase. [native-inputs]: Replace git with git-minimal/pinned; add python-mypy, python-paramiko, python-pytest, python-requests, python-setuptools, and python-wheel; remove python-mock and python-gpg. Change-Id: I642de3e7707d545672066c6e59c9bcc2b5926097
2025-01-20gnu: python-geventhttpclient: Update to 2.3.3.Ricardo Wurmus
* gnu/packages/python-web.scm (python-geventhttpclient): Update to 2.3.3. [source]: Fetch from git repository; remove snippet. [build-system]: Use pyproject-build-system. [arguments]: Use #:test-flags; remove all custom phases. [native-inputs]: Add python-requests, python-setuptools, and python-wheel. [propagated-inputs]: Remove python-six. Change-Id: Ide97ffb7d656f58dd6693bd59ff82706bfea6caa
2025-01-20gnu: python-gevent: Propagate greenlet.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-gevent)[native-inputs]: Move python-greenlet from here... [propagated-inputs]: ...to here. [arguments]: Adjust. Change-Id: I5ebac1dd5e8c16b11e4855da78972c98f10cd285
2025-01-20gnu: python-eventlet: Update to 0.38.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-eventlet): Update to 0.38.2. [native-inputs]: Add python-pre-commit. [arguments]: Disable one more test. Change-Id: I73638abba7d5363538d7c65254e610e704fbe5d0
2025-01-20gnu: python-gevent: Update to 24.11.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-gevent): Update to 24.11.1. [build-system]: Use pyproject-build-system. [arguments]: Use #:test-flags; enable more tests; rename 'add-greenlet-on-C_INCLUDE_PATH to 'augment-C_INCLUDE_PATH. [propagated-inputs]: Remove python-greenlet. [native-inputs]: Add python-cffi, python-coverage, python-greenlet, python-idna, python-requests, python-setuptools, and python-wheel. [inputs]: Add libuv. Change-Id: Idd09ca01caf2977783c5a05eac2817b5630df327
2025-01-20gnu: python-pandas-2: Restrict number of test processes.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Restrict to at most four processes. Change-Id: I8ee4cb29ad922e9b853515b5f0e8f8aabca52c92
2025-01-20gnu: python-pandas-2: Remove X.Ricardo Wurmus
These tests are not run anyway, so there is no need to launch an X server. * gnu/packages/python-science.scm (python-pandas-2)[arguments]: Rename 'prepare-x phase to 'pre-check. [native-inputs]: Remove xorg-server-for-tests. Change-Id: Ib85883360397d2715a1893b74435d96a1d119f9e
2025-01-20gnu: python-pythran: Update to 0.17.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pythran): Update to 0.17.0. [build-system]: Use pyproject-build-system. [source]: Remove obsolete snippet. [arguments]: Remove phase 'do-not-install-third-parties and custom 'check phase; use #:test-flags and add 'pre-check phase. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I49ebdd21cfb0668dd84f0d12c460a86ed694c7d6
2025-01-20gnu: python-beniget: Update to 0.4.2.post1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-beniget): Update to 0.4.2.post1. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I03c53e97f1bb4ae7c13a4af2c7e4434137f764d6
2025-01-20gnu: python-gast: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-gast): Update to 0.6.0. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase. [native-inputs]: Add python-setuptools and python-wheel. [propagated-inputs]: Remove. Change-Id: I3cc17b2c5434e637435f76482e0dcaf54c75c0dd
2025-01-20gnu: linkchecker: Update to 10.5.0.Sharlatan Hellseher
* gnu/packages/web.scm (linkchecker): Update to 10.5.0. Improve package style. Fix bulid. [build-system]: Swap to pyproject-build-system. [arguments]<test-flags>: Skip 2 tests. <phases>: Add 'set-version. Use default 'check. [inputs]: Remove python-pyxdg. [native-inputs]: Remove lables. Remove gettext-minimal, python-miniboa, and python-parameterized; add python-hatch-vcs, python-hatchling, and python-setuptools-scm. Change-Id: I2292be0305e8ad3991680ced6b154c48571e3efc
2025-01-20gnu: python-email-validator: Update to 2.2.0.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-email-validator): Update to 2.2.0. Improve style. [build-system]: Swap to pyrpoject-build-system. [arguments]<test-flags>: Skip one test. <phases>: Remove 'use-dnspython as removed in <https://github.com/JoshData/python-email-validator/pull/13>. [native-inputs]: Add python-pytest, python-setuptools, and python-wheel. Change-Id: Idc51ad58fe734071aa66f44bce0fb7cbf84831b6
2025-01-20gnu: python-dnspython: Update to 2.7.0.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-dnspython): Update to 2.7.0. Improve style. [source]: PyPI archive has been swapped from .zip to .tar.gz. [build-system]: Swap to pyproject-build-system. [arguments]<test-flags>: Skip 2 tests. [propagated-inputs]: Add python-cryptography, python-aioquic, python-h2, python-httpcore, python-httpx, python-idna, and python-trio. [native-inputs]: Remove unzip; add python-hatchling and python-pytest. Change-Id: I726a9d68c61435089c1e7a846e8aa7c8b41f8378
2025-01-20gnu: python-joblib: Disable one additional test.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-joblib)[arguments]: Disable one more test. Change-Id: Id0b99ba3abb37bf49d26434b6719a7f6f77ee00a
2025-01-20gnu: python-starlette: Update to 0.42.0.Ricardo Wurmus
* gnu/packages/python-web.scm (python-starlette): Update to 0.42.0. Change-Id: I2cdfadf4856e460f7b7cae9f8654a1806839b9ea
2025-01-20gnu: python-pydantic: Fix build.Sharlatan Hellseher
As pyproject-build system now reads pytest config from pyproject.toml or pytest.ini files it starts highlighting enabled "fail on warnings" which were ignored before, this change silent it again. * gnu/packages/python-xyz.scm (python-pydantic) [arguments]<test-flags>: Skip 5 tests. [phases]{pre-check}: Ignore all pytest warnings set in pyproject.toml. Change-Id: I8551ba672d095b56f90955e4203c8a2aac270a4b
2025-01-20gnu: python-tox: Simplify.Ricardo Wurmus
* gnu/packages/python-check.scm (python-tox)[arguments]: Enable more tests; remove phase 'virtualenv-compatibility. Change-Id: I39a637cfc2385da74c11fc82ea811a26cf5f849a
2025-01-20gnu: python-a2wsgi: Disable one test.Ricardo Wurmus
* gnu/packages/python-web.scm (python-a2wsgi)[arguments]: Disable one more test. Change-Id: I034da8787155eaa6fd49f92ed9a84887c8311cbe
2025-01-20gnu: python-devpi-process: Add missing input.Ricardo Wurmus
* gnu/packages/python-web.scm (python-devpi-process)[native-inputs]: Add nss-certs-for-test. Change-Id: Ia3ee82b6ba7c7e1832e41a3520056f740a09d6e6
2025-01-20gnu: python-httpx: Update to 0.28.1.Ricardo Wurmus
* gnu/packages/python-web.scm (python-httpx): Update to 0.28.1. Change-Id: Ia7f1659eeeee05de763b000cda4bc9a60c418c21
2025-01-20gnu: python-uvicorn: Update to 0.34.0.Ricardo Wurmus
* gnu/packages/python-web.scm (python-uvicorn): Update to 0.34.0. [native-inputs]: Add nss-certs-for-test. Change-Id: I48825939c91464c132a9ee85a986a39173f6854e
2025-01-20gnu: python-waitress: Update to 3.0.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-waitress): Update to 3.0.2. [native-inputs]: Add python-coverage. Change-Id: I6d0b78afe6e3ab371473f26db144586c0d97abba
2025-01-20gnu: python-devtools: Simplify.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-devtools)[arguments]: Enable one additional test; delete obsolete phase 'relax-requirements. Change-Id: I5dcf88954cdf8d37e522c425bf7bef4c29913205
2025-01-20gnu: python-typing-extensions: Update to 4.12.2.Ricardo Wurmus
* gnu/packages/python-build.scm (python-typing-extensions): Update to 4.12.2. Change-Id: I410ec4c8ed29624638476964c9f7a28f894e9fc8
2025-01-20gnu: python-virtualenv: Update to 20.28.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.28.0. [build-system]: Use pyproject-build-system. [arguments]: Disable a test. [native-inputs]: Add python-covdefaults, python-coverage, python-flaky, python-hatch-vcs, python-hatchling, python-packaging, python-pytest-env, python-pytest-mock, python-pytest-timeout, python-setuptools, and python-time-machine; remove python-mock and python-setuptools-scm. [propagated-inputs]: Add python-importlib-metadata and python-platformdirs; remove python-appdirs and python-six. Change-Id: Id14e7608aabcba6e03ca081a508c3ac9aff1451c
2025-01-20gnu: python-platformdirs: Update to 4.3.6.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-platformdirs): Update to 4.3.6. Change-Id: I467128079d97a1687103446ac7260cc8cf3ab221
2025-01-20gnu: python-chardet: Update to 5.2.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-chardet): Update to 5.2.0. Change-Id: Icc734f848c79eea2b775c7402793ede9a25ebc85
2025-01-20gnu: python-colorama: Update to 0.4.6.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-colorama): Update to 0.4.6. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-hatchling and python-pytest. Change-Id: Ifdc20a9dc2a3f21ac59aaaa88fd90abe926595a0
2025-01-20gnu: python-extension-helpers: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-extension-helpers): Update to 1.2.0. [arguments]: Disable broken test. Change-Id: I3a99240c52fc8114b6eb4d7c3e6642530cf7d756
2025-01-20gnu: python-py2bit: Use pyproject-build-system.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-py2bit)[build-system]: Use pyproject-build-system. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I6f66e5f3c0f7612f460e2a6fa931b4c456db6a1b
2025-01-20gnu: python-biom-format: Use pyproject-build-system.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-biom-format)[build-system]: Use pyproject-build-system. [arguments]: Replace phase 'disable-broken-tests with #:test-flags; enable one test; add phase 'build-extensions. [native-inputs]: Remove python-nose. Change-Id: I8399d9b05bdb6da89d8056d536ab7e25dc22f9c2
2025-01-20gnu: python-webcolors: Update to 24.11.1.Ricardo Wurmus
* gnu/packages/python-web.scm (python-webcolors): Update to 24.11.1. [build-system]: Use pyproject-build-system. [arguments]: Add phase 'patch-pyproject; remove custom 'check phase. [native-inputs]: Add python-pdm-backend. Change-Id: Ifcc947d08a369dfafa6f0e0eed473bc6e372ccd6
2025-01-20gnu: python-tox: Update to 4.23.2.Ricardo Wurmus
* gnu/packages/python-check.scm (python-tox): Update to 4.23.2. [build-system]: Use pyproject-build-system. [arguments]: Update list of disabled tests; remove custom 'check phase; add phase 'virtualenv-compatibility. [propagated-inputs]: Add python-typing-extensions; remove python-py and python-six. [native-inputs]: Add python-devpi-process, python-time-machine, and python-wheel; remove python-distlib. Change-Id: I7390ad0f31bf6536227081e55790b6592b3e7c81
2025-01-20gnu: Add python-devpi-process.Ricardo Wurmus
* gnu/packages/python-web.scm (python-devpi-process): New variable. Change-Id: Ic1829dfbb108a45c44423f570eeb604ddfe73795
2025-01-20gnu: Add python-devpi-client.Ricardo Wurmus
* gnu/packages/python-web.scm (python-devpi-client): New variable. Change-Id: I29e0e3b573111d39b93d595cb7a49c588f5ac99a
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