diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index cb441655eb..265a70cdd4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4897,6 +4897,50 @@ makes available functions for visualization and exploration of the data and results.") (license license:gpl3+))) +(define-public r-dropletutils + (package + (name "r-dropletutils") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "DropletUtils" version)) + (sha256 + (base32 "09xwfb4ihpsp465vb1zbcwm6ww6qi3spn9d8p4i1gczyc0p9pf1y")))) + (properties `((upstream-name . "DropletUtils"))) + (build-system r-build-system) + (propagated-inputs + (list r-beachmat + r-bh + r-biocgenerics + r-biocparallel + r-delayedarray + r-delayedmatrixstats + r-dqrng + r-edger + r-genomicranges + r-hdf5array + r-iranges + r-matrix + r-r-utils + r-rcpp + r-rhdf5 + r-rhdf5lib + r-s4vectors + r-scuttle + r-singlecellexperiment + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/DropletUtils") + (synopsis "Utilities for handling single-cell droplet data") + (description + "This package provides a number of utility functions for handling +single-cell RNA-seq data from droplet technologies such as 10X Genomics. This +includes data loading from count matrices or molecule information files, +identification of cells from empty droplets, removal of barcode-swapped +pseudo-cells, and downsampling of the count matrix.") + (license license:gpl3))) + (define-public r-dss (package (name "r-dss") |