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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2023-05-11 18:30:16 +0200
committerRicardo Wurmus <rekado@elephly.net>2023-05-12 09:36:26 +0200
commit9d05f9a9f538061e1fdc5aedb0748d260fcf20f7 (patch)
tree53a9be0d50867e17ef87f420539306656e4fb7d8 /gnu/packages
parenta5bae9c7486b88c6b416cbd74dc0c7990fb10f73 (diff)
downloadguix-9d05f9a9f538061e1fdc5aedb0748d260fcf20f7.tar.gz
guix-9d05f9a9f538061e1fdc5aedb0748d260fcf20f7.zip
gnu: Add r-dropletutils.
* gnu/packages/bioconductor.scm (r-dropletutils): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm44
1 files changed, 44 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index cb441655eb..265a70cdd4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4897,6 +4897,50 @@ makes available functions for visualization and exploration of the data and
results.")
(license license:gpl3+)))
+(define-public r-dropletutils
+ (package
+ (name "r-dropletutils")
+ (version "1.20.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DropletUtils" version))
+ (sha256
+ (base32 "09xwfb4ihpsp465vb1zbcwm6ww6qi3spn9d8p4i1gczyc0p9pf1y"))))
+ (properties `((upstream-name . "DropletUtils")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-beachmat
+ r-bh
+ r-biocgenerics
+ r-biocparallel
+ r-delayedarray
+ r-delayedmatrixstats
+ r-dqrng
+ r-edger
+ r-genomicranges
+ r-hdf5array
+ r-iranges
+ r-matrix
+ r-r-utils
+ r-rcpp
+ r-rhdf5
+ r-rhdf5lib
+ r-s4vectors
+ r-scuttle
+ r-singlecellexperiment
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/DropletUtils")
+ (synopsis "Utilities for handling single-cell droplet data")
+ (description
+ "This package provides a number of utility functions for handling
+single-cell RNA-seq data from droplet technologies such as 10X Genomics. This
+includes data loading from count matrices or molecule information files,
+identification of cells from empty droplets, removal of barcode-swapped
+pseudo-cells, and downsampling of the count matrix.")
+ (license license:gpl3)))
+
(define-public r-dss
(package
(name "r-dss")