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-rw-r--r--gnu/packages/statistics.scm75
1 files changed, 43 insertions, 32 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index b09076106f..dc1dc6a66a 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1501,13 +1501,13 @@ from knitr Rmarkdown.")
(define-public r-microbenchmark
(package
(name "r-microbenchmark")
- (version "1.4-7")
+ (version "1.4.9")
(source (origin
(method url-fetch)
(uri (cran-uri "microbenchmark" version))
(sha256
(base32
- "1xl4m4yl4h2zcjiz8wsa7f3sh55qg2xr3sgpvz18rlix6b3173r6"))))
+ "1lpzpffnjiwnxxl0jhrvyj88fvxqksnpccbpq953xwqf6ypjqga4"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/microbenchmark/")
(synopsis "Accurate timing functions for R")
@@ -1563,13 +1563,13 @@ you call it again with the same arguments it returns the pre-computed value.")
(define-public r-crayon
(package
(name "r-crayon")
- (version "1.4.1")
+ (version "1.4.2")
(source (origin
(method url-fetch)
(uri (cran-uri "crayon" version))
(sha256
(base32
- "1ir963s6zk9l32fw257y54p7898cd7z7yazkn9h6j2cdfhpf9dh8"))))
+ "0mxq87qsvz5znfncrb6yjchzv6iwpn9lr386i02y6xiycizkjd7f"))))
(build-system r-build-system)
(home-page "https://github.com/gaborcsardi/crayon")
(synopsis "Colored terminal output for R")
@@ -1683,14 +1683,14 @@ like tidy evaluation.")
(define-public r-tibble
(package
(name "r-tibble")
- (version "3.1.5")
+ (version "3.1.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "tibble" version))
(sha256
(base32
- "1ryv1r3cah1s8dyqdhcb0yl81r384jvgc4d1q9zwsrrsd2x8fqys"))))
+ "14l2i6ri3v5y0h8g0ahc4kz0pdqsp5yabxk2w8wavss6y44xjcsv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ellipsis" ,r-ellipsis)
@@ -1999,6 +1999,16 @@ inference for statistical models.")
(define-public python2-statsmodels
(let ((stats (package-with-python2 python-statsmodels)))
(package/inherit stats
+ ;; Version 0.11.1 and later does not work with Python 2. It may build
+ ;; fine but loading modules fails.
+ (version "0.9.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "statsmodels" version))
+ (sha256
+ (base32
+ "0fxs8a7sp4d7jvqlm36yi45i2d28kjfvraf9q8i9jr1chhxgjqb4"))))
(propagated-inputs
`(("python2-pytz" ,python2-pytz)
("python2-numpy" ,python2-numpy)
@@ -2145,14 +2155,14 @@ limited to R.")
(define-public r-backports
(package
(name "r-backports")
- (version "1.2.1")
+ (version "1.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "backports" version))
(sha256
(base32
- "1mf2nz78l97lbxyagv55bcxrny51ds8g28h307cfa1g3ayylp0x2"))))
+ "0bc14x4gyw4gnvm4hrvg5cmmrq449kfza3l14wdgp642ra8iw8sg"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/backports")
(synopsis "Reimplementations of functions introduced since R 3.0.0")
@@ -2428,13 +2438,13 @@ functions make it easy to control additional request components.")
(define-public r-git2r
(package
(name "r-git2r")
- (version "0.28.0")
+ (version "0.29.0")
(source (origin
(method url-fetch)
(uri (cran-uri "git2r" version))
(sha256
(base32
- "1wjmbs9cmm16pm3g0rmqp7cxxyh95m5lgx4fx5bpgj6j466i8vff"))))
+ "13nlrhma6kavvhranb43w3003vadfkyrn2f4l3r63iqavj0s3xzq"))))
(build-system r-build-system)
(inputs
`(("libgit2" ,libgit2)
@@ -2558,13 +2568,13 @@ time-of-day values, based on the @code{difftime} class.")
(define-public r-readr
(package
(name "r-readr")
- (version "2.0.2")
+ (version "2.1.0")
(source (origin
(method url-fetch)
(uri (cran-uri "readr" version))
(sha256
(base32
- "05bnvcc55i0xjilfrqx3700mwiz8sgihq1wxlbvvr8nxa7bmxc4q"))))
+ "03d7y4k9w5vcm7fwlcaw715ff7d953i92jwbp7ynrqcr09kw6zm0"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cli" ,r-cli)
@@ -2651,13 +2661,13 @@ well as additional utilities such as panel and axis annotation functions.")
(define-public r-rcpparmadillo
(package
(name "r-rcpparmadillo")
- (version "0.10.7.0.0")
+ (version "0.10.7.3.0")
(source (origin
(method url-fetch)
(uri (cran-uri "RcppArmadillo" version))
(sha256
(base32
- "1x35xb5yfslsdpaz9msl5p9f7gilnbkhwvq7pbycwasvkp2fma01"))))
+ "0qk25x8naci76fqcd8jkv8gnba6sj61vkv9yf8498fwff1kvf41p"))))
(properties `((upstream-name . "RcppArmadillo")))
(build-system r-build-system)
(propagated-inputs
@@ -3074,13 +3084,13 @@ multiple breakpoints are allowed.")
(define-public r-snow
(package
(name "r-snow")
- (version "0.4-3")
+ (version "0.4-4")
(source (origin
(method url-fetch)
(uri (cran-uri "snow" version))
(sha256
(base32
- "1n3n8pva9s34fvlw32yng0x416lmbv7q1fsd0ywa4kikmxym64l5"))))
+ "1j8kvf3imxijsqkdjz4i9s7qggfxqrpas46y5wz6za92y937yn44"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/snow")
(synopsis "Support for simple parallel computing in R")
@@ -3499,13 +3509,13 @@ using the multicore functionality of the parallel package.")
"datatables-extensions/Select"))))
(package
(name "r-dt")
- (version "0.19")
+ (version "0.20")
(source (origin
(method url-fetch)
(uri (cran-uri "DT" version))
(sha256
(base32
- "04rv1rprqlc56hycxpqkbmwmq4wjvmanq2lwxrflmf2s46pbv9ms"))
+ "17xs18i439p15agyk7z2xyyrwgrpn5pw09kd3jwxn7qhxi4pyvf6"))
(modules '((guix build utils)))
(snippet
'(for-each delete-file
@@ -3650,13 +3660,13 @@ analysis of large sparse or dense matrices.")
(define-public r-glmnet
(package
(name "r-glmnet")
- (version "4.1-2")
+ (version "4.1-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "glmnet" version))
(sha256
- (base32 "1kfd8kfhapx2cxw6qnkbs502c3kya4pd9qmf0mk76cdlq1c2paq6"))))
+ (base32 "0nij8v44b5dvp1vc843sfkl9ds83n6g687m2p37q1rdn82m3bg34"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)
@@ -3664,6 +3674,8 @@ analysis of large sparse or dense matrices.")
(propagated-inputs
`(("r-foreach" ,r-foreach)
("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppeigen" ,r-rcppeigen)
("r-shape" ,r-shape)
("r-survival" ,r-survival)))
(home-page "https://www.jstatsoft.org/article/view/v033i01")
@@ -5103,14 +5115,14 @@ models, generalized linear models and model-based clustering.")
(define-public r-mclust
(package
(name "r-mclust")
- (version "5.4.7")
+ (version "5.4.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "mclust" version))
(sha256
(base32
- "08scl72llpinfijiyx14yqvmx8lma9jvh8h92v9ynnzfr9kadxa5"))))
+ "0j79a1nidwxl62x8j97k09qjxladp9irw5z1x1q5gyy6zxskvh8i"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)
@@ -5273,14 +5285,14 @@ generally.")
(define-public r-robust
(package
(name "r-robust")
- (version "0.5-0.0")
+ (version "0.6-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "robust" version))
(sha256
(base32
- "1ks5scp8bnicl9j1r8yrmz668fjs6ifdmi540zw6d2ck500bbw42"))))
+ "0z8i0qqlsa6vpl457qir3dlsynhjfn2g22436d776vxwyqjx4vs9"))))
(build-system r-build-system)
(propagated-inputs
`(("r-fit-models" ,r-fit-models)
@@ -5519,14 +5531,14 @@ expected shortfall risk are also included.")
(define-public r-nloptr
(package
(name "r-nloptr")
- (version "1.2.2.2")
+ (version "1.2.2.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "nloptr" version))
(sha256
(base32
- "0whkilb85k4wixvr3k7rygfw1rcs1fs9h8c18kz4p3y1k9hsj3p8"))))
+ "1zznk9f2w2g02zqzay21k8xqzfvc6icxfzp6bx2wpd77sm7vf25g"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr) ; for building vignettes
@@ -5629,13 +5641,13 @@ Companion to Applied Regression, Third Edition, Sage.")
(define-public r-car
(package
(name "r-car")
- (version "3.0-11")
+ (version "3.0-12")
(source
(origin
(method url-fetch)
(uri (cran-uri "car" version))
(sha256
- (base32 "0b2l35656bi75hfvnjhzhlnrnbpjn0vv7nvny8gn65gm0rr94b5k"))))
+ (base32 "00kk8l71508f73kyn21is1mx6kjbrzdq3ls94c5ajhiqmvpsd6dq"))))
(build-system r-build-system)
(propagated-inputs
`(("r-abind" ,r-abind)
@@ -5647,8 +5659,7 @@ Companion to Applied Regression, Third Edition, Sage.")
("r-nlme" ,r-nlme)
("r-nnet" ,r-nnet)
("r-pbkrtest" ,r-pbkrtest)
- ("r-quantreg" ,r-quantreg)
- ("r-rio" ,r-rio)))
+ ("r-quantreg" ,r-quantreg)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://r-forge.r-project.org/projects/car/")
@@ -5915,14 +5926,14 @@ easy and fun.")
(define-public r-fdrtool
(package
(name "r-fdrtool")
- (version "1.2.16")
+ (version "1.2.17")
(source
(origin
(method url-fetch)
(uri (cran-uri "fdrtool" version))
(sha256
(base32
- "1aap4k1l3a9m43374xq688mqnzkgqx8l021li262r3h1xr4adpp7"))))
+ "1pf554vb902vavgqc4c0kgghywbgcvr3lkkr414bxngavcd60lil"))))
(build-system r-build-system)
(home-page "http://strimmerlab.org/software/fdrtool/")
(synopsis "Estimation of false discovery rates and higher criticism")
generated by cgit