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| -rw-r--r-- | gnu/packages/bioconductor.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 46a93f88af..b61fcaa051 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4692,6 +4692,46 @@ spent loading the full derfinder package when running the F-statistics calculation in parallel.") (license license:artistic2.0))) +(define-public r-dmrcate + (package + (name "r-dmrcate") + (version "2.12.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "DMRcate" version)) + (sha256 + (base32 + "0iphlsbam5fcxbj5j0cmqk3wz5ykwz0mvk3qbrhzxbpf2h4w2qib")))) + (properties `((upstream-name . "DMRcate"))) + (build-system r-build-system) + (propagated-inputs + (list r-bsseq + r-dss + r-edger + r-experimenthub + r-genomeinfodb + r-genomicranges + r-gviz + r-iranges + r-limma + r-minfi + r-missmethyl + r-plyr + r-s4vectors + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/DMRcate") + (synopsis "Methylation array and sequencing spatial analysis methods") + (description + "This is a package for de novo identification and extraction of +@dfn{differentially methylated regions} (DMRs) from the human genome using +@dfn{Whole Genome Bisulfite Sequencing} (WGBS) and Illumina Infinium +Array (450K and EPIC) data. It provides functionality for filtering probes +possibly confounded by SNPs and cross-hybridisation. It includes +@code{GRanges} generation and plotting functions.") + ;; GPLv3 with additional liability disclaimer. + (license license:gpl3))) + (define-public r-drimseq (package (name "r-drimseq") |