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authorRicardo Wurmus <rekado@elephly.net>2023-03-30 14:22:27 +0200
committerRicardo Wurmus <rekado@elephly.net>2023-03-30 14:22:27 +0200
commitbd350536774b5285b74b3f80c9fb347883b5241a (patch)
tree87b399aa296f17a82ec03242fd9bae0ddb69c6d2
parenta969d91ca5147e6f27224e2539352724ae685ad5 (diff)
downloadguix-bd350536774b5285b74b3f80c9fb347883b5241a.tar.gz
guix-bd350536774b5285b74b3f80c9fb347883b5241a.zip
gnu: Add r-dmrcate.
* gnu/packages/bioconductor.scm (r-dmrcate): New variable.
-rw-r--r--gnu/packages/bioconductor.scm40
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 46a93f88af..b61fcaa051 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4692,6 +4692,46 @@ spent loading the full derfinder package when running the F-statistics
calculation in parallel.")
(license license:artistic2.0)))
+(define-public r-dmrcate
+ (package
+ (name "r-dmrcate")
+ (version "2.12.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DMRcate" version))
+ (sha256
+ (base32
+ "0iphlsbam5fcxbj5j0cmqk3wz5ykwz0mvk3qbrhzxbpf2h4w2qib"))))
+ (properties `((upstream-name . "DMRcate")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-bsseq
+ r-dss
+ r-edger
+ r-experimenthub
+ r-genomeinfodb
+ r-genomicranges
+ r-gviz
+ r-iranges
+ r-limma
+ r-minfi
+ r-missmethyl
+ r-plyr
+ r-s4vectors
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/DMRcate")
+ (synopsis "Methylation array and sequencing spatial analysis methods")
+ (description
+ "This is a package for de novo identification and extraction of
+@dfn{differentially methylated regions} (DMRs) from the human genome using
+@dfn{Whole Genome Bisulfite Sequencing} (WGBS) and Illumina Infinium
+Array (450K and EPIC) data. It provides functionality for filtering probes
+possibly confounded by SNPs and cross-hybridisation. It includes
+@code{GRanges} generation and plotting functions.")
+ ;; GPLv3 with additional liability disclaimer.
+ (license license:gpl3)))
+
(define-public r-drimseq
(package
(name "r-drimseq")