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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2020 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu services science)
  #:export (<rshiny-configuration>
            rshiny-configuration
            rshiny-configuration?
            rshiny-configuration-package
            rshiny-configuration-binary
            rshiny-shepherd-service
            rshiny-service-type))

(use-modules (gnu)
             (guix records)
             (ice-9 match))
(use-service-modules shepherd)
(use-package-modules cran)

(define-record-type* <rshiny-configuration>
  rshiny-configuration
  make-rshiny-configuration
  rshiny-configuration?
  (package          rshiny-configuration-package    ; file-like
                    (default r-shiny))
  (binary           rshiny-configuration-binary     ; string
                    (default "rshiny")))

(define rshiny-shepherd-service
  (match-lambda
    (($ <rshiny-configuration> package binary)
     (list
       (shepherd-service
         (documentation (string-append "R-Shiny service for " binary))
         (provision (list (symbol-append 'rshiny- (string->symbol
                                                    (string-take binary 9)))))
         (requirement '(networking))
         (start
           #~(exec-command
               (list
                 #$(string-append "/run/current-system/profile/bin/" binary))
               ;#:log-file #$(string-append "/var/log/" binary ".log") ; kills shepherd
               #:environment-variables
               (list "R_LIBS_USER=/run/current-system/profile/site-library/")))
         (stop #~(make-kill-destructor)))))))

(define rshiny-service-type
  (service-type
    (name 'rshiny)
    (extensions
      (list
        (service-extension shepherd-root-service-type
                           rshiny-shepherd-service)
        (service-extension profile-service-type
                           ;; We want the package installed so that it
                           ;; pulls in the propagated inputs as well.
                           (lambda (config)
                             (list
                               (rshiny-configuration-package config))))))
    (description
     "Run an R-Shiny webapp as a Guix Service.")))
escription]: New field. * gnu/services/kerberos.scm (krb5-service-type)[description]: New field. (pam-krb5-service-type)[description]: New field. * gnu/services/lirc.scm (lirc-service-type)[description]: New field. * gnu/services/mail.scm (dovecot-service-type)[description]: New field. (opensmtpd-service-type)[description]: New field. (mail-aliases-service-type)[description]: New field. (exim-service-type)[description]: New field. * gnu/services/monitoring.scm (zabbix-server-service-type)[description]: New field. (zabbix-agent-service-type)[description]: New field. * gnu/services/nfs.scm (rpcbind-service-type)[description]: New field. (pipefs-service-type)[description]: New field. (gss-service-type)[description]: New field. (idmap-service-type)[description]: New field. * gnu/services/spice.scm (spice-vdagent-service-type)[description]: New field. * gnu/services/sysctl.scm (sysctl-service-type)[description]: New field. * gnu/services/virtualization.scm (libvirt-service-type)[description]: New field. (virtlog-service-type)[description]: New field. * gnu/services/vpn.scm (openvpn-server-service-type)[description]: New field. (openvpn-client-service-type)[description]: New field. (wireguard-service-type)[description]: New field. * gnu/services/web.scm (httpd-service-type)[description]: New field. (fcgiwrap-service-type)[description]: New field. (agate-service-type)[description]: New field. [name]: Fix. Ludovic Courtès 2022-02-17services: zabbix: Add requirement on 'user-processes'....This ensures the services does not start before mounts are up. Reported by rekado on #guix. * gnu/services/monitoring.scm (zabbix-server-shepherd-service, zabbix-agent-shepherd-service)[requirement]: New field. Marius Bakke 2022-02-13doc: Zabbix: Improvide description....* doc/guix.texi (Monitoring Services): Document the various 'zabbix-*' service types, and expand description of all Zabbix services. Use less marketing terms. (Web Services): Add subsubheading for PHP-FPM, and anchors for cross-referencing. * gnu/services/monitoring.scm (zabbix-front-end-configuration): Use @ref instead of @pxref for cross-referencing. Marius Bakke 2022-02-07services: zabbix-frontend: Restore correct variable name....This is a follow-up to 326e08bf0f55409f040612001f73a2cc4091c159, et.al. * gnu/services/monitoring.scm (%zabbix-front-end-nginx-configuration): Rename to ... (%zabbix-front-end-configuration-nginx): ... this. (zabbix-front-end-nginx-extension): Adjust accordingly. Marius Bakke 2022-02-07services: monitoring: Remove unused procedure....This is a follow-up to commit 326e08bf0f55409f040612001f73a2cc4091c159. * gnu/services/monitoring.scm (zabbix-front-end-nginx-configuration): Remove variable. Marius Bakke 2022-02-07services: zabbix-front-end: Restore backwards compatibility....Commit e301f1a8ed11f9eacb2b7f525a7446dc00621a8b removed the NGINX argument entirely, but users may rely on and override it. Reported by rekado on #guix. * gnu/services/monitoring.scm (%zabbix-front-end-nginx-configuration): Restore exported variable. (zabbix-front-end-nginx-extension): New procedure. (zabbix-front-end-configuration): Remove FASTCGI-PARAMS field. Restore NGINX field, but default to the empty list. (zabbix-front-end-service-type): Extend NGINX-SERVICE-TYPE by ZABBIX-FRONT-END-NGINX-EXTENSION. * doc/guix.texi (Monitoring Services): Regenerate documentation. Marius Bakke 2022-02-01services: zabbix-frontend: Support custom server package....* gnu/services/monitoring.scm (%zabbix-front-end-configuration-nginx): Rename to ... (zabbix-front-end-nginx-configuration): ... this. Take server package and FastCGI parameters from ... (zabbix-front-end-configuration): ... here. Add PACKAGE and FASTCGI-PARAMS fields, remove NGINX. (zabbix-front-end-service-type): Adjust for renamed procedure. * doc/guix.texi (Monitoring Services)[Zabbix front-end]: Regenerate documentation. Marius Bakke 2022-01-30services: zabbix: Support gexps in configuration serializer....This makes it possible to do e.g. (include-files (list (local-file "foo.conf"))). * gnu/services/monitoring.scm (serialize-field, serialize-list, serialize-include-files, serialize-extra-options): Rewrite as gexps. (zabbix-server-config-file, zabbix-agent-config-file): Simplify builders by using FORMAT. Marius Bakke 2022-01-29services: zabbix-agent: Set the PATH variable....* gnu/services/monitoring.scm (zabbix-agent-shepherd-service)[start]: Set the PATH variable to the common values. Marius Bakke 2022-01-29services: zabbix-frontend: Adjust indentation....* gnu/services/monitoring.scm (zabbix-front-end-activation): Reindent. Marius Bakke 2022-01-29services: zabbix-frontend: Enable IEEE754-compatible history values....* gnu/services/monitoring.scm (zabbix-front-end-config): Specify $DB['DOUBLE_IEEE754'] in the configuration file, as per current example. Marius Bakke 2022-01-29services: zabbix-server: Add shepherd actions for runtime control commands....* gnu/services/monitoring.scm (zabbix-server-runtime-control-procedure, zabbix-server-actions): New variables. (zabbix-server-shepherd-service)[actions]: New field. Let-bind variables common between actions and the start procedure. Marius Bakke 2022-01-29services: zabbix-frontend: Fix configuration file for hard coded passwords....This is a follow-up to commit 078f5bfae7ee174177791defcfd350117a503a6d. * gnu/services/monitoring.scm (zabbix-front-end-config): When DB-PASSWORD is set, enclose the password with quotes in the configuration file. Marius Bakke 2022-01-26services: zabbix-server: Do not write database password to the store....* gnu/services/monitoring.scm (zabbix-front-end-config): Read the secret file from zabbix.conf.php at runtime instead of embedding the contents. Marius Bakke 2022-01-26services: zabbix-agent: Respect user and group configuration....* gnu/services/monitoring.scm (zabbix-agent-account): Look up user and group from CONFIG instead of hard-coded values. Marius Bakke 2021-11-30services: Accept <inferior-package>s in lieu of <package>s....* gnu/services/authentication.scm (fprintd-configuration) (nslcd-configuration): Substitute file-like objects for package ones. * gnu/services/cgit.scm (cgit-configuration, opaque-cgit-configuration): Likewise. * gnu/services/cups.scm (package-list?, cups-configuration): Likewise. * gnu/services/dns.scm (verify-knot-configuration) (ddclient-configuration): Likewise. * gnu/services/docker.scm (docker-configuration): Likewise. * gnu/services/file-sharing.scm (transmission-daemon-configuration): Likewise. * gnu/services/getmail.scm (getmail-configuration): Likewise. * gnu/services/mail.scm (dovecot-configuration) (opaque-dovecot-configuration): Likewise. * gnu/services/messaging.scm (prosody-configuration) (opaque-prosody-configuration): Likewise. * gnu/services/monitoring.scm (zabbix-server-configuration) (zabbix-agent-configuration): Likewise. * gnu/services/networking.scm (opendht-configuration): Likewise. * gnu/services/pm.scm (tlp-configuration): Likewise. * gnu/services/telephony.scm (jami-configuration): Likewise. * gnu/services/virtualization.scm (libvirt-configuration) (qemu-guest-agent-configuration): Likewise. * gnu/services/vpn.scm (openvpn-client-configuration): Likewise. Tobias Geerinckx-Rice 2020-12-07prometheus-node-exporter: Support extra options....There are plenty of options supported that the Guix configuration record doesn't help you with, so add this field to allow users to do their own thing. * gnu/services/monitoring.scm (<prometheus-node-exporter-configuration>): Add extra-options field. (prometheus-node-exporter-shepherd-service): Handle the extra options. * doc/guix.texi (Prometheus Node Exporter Service): Document this. Christopher Baines 2020-12-07prometheus-node-exporter: Enable the textfile collector....* gnu/services/monitoring.scm (<prometheus-node-exporter-configuration>): Add textfile-directory. (prometheus-node-exporter-textfile-directory, prometheus-node-exporter-activation): New procedures. (prometheus-node-exporter-shepherd-service): Pass --collector.textfile.directoryto the service. (prometheus-node-exporter-service-type): Extend the activation service type. * doc/guix.texi (Prometheus Node Exporter Service): Document. Christopher Baines 2020-12-07services: prometheus-node-exporter: Use a log file....This makes the logs easier to find and read. * gnu/services/monitoring.scm (prometheus-node-exporter-shepherd-service): Pass #:log-file to make-forkexec-constructor. Christopher Baines 2020-12-07prometheus-node-exporter: Add user and group....So it doesn't run as root, and because this will help with the textfile exporter. * gnu/services/monitoring.scm (%prometheus-node-exporter-accounts): New variable. (prometheus-node-exporter-shepherd-service): Use the relevant user and group. (prometheus-node-exporter-service-type): Extend the account service type. Christopher Baines 2020-12-07services: prometheus-node-exporter: Neaten up....Add relevant exports, as well as a comment to better indicate where the relevant code starts. * gnu/services/monitoring.scm (prometheus-node-exporter-service-type): Capitalise Prometheus. Christopher Baines 2020-11-29services: zabbix-agent: Delete not mandatory hostname configuration....* gnu/services/monitoring.scm (zabbix-agent-configuration)[hostname]: Set to empty string. Oleg Pykhalov 2020-11-05services: Remove imports of (ice-9 …) modules....* gnu/services/monitoring.scm (zabbix-server-activation): Remove (ice-9 rdelim) from the imported modules. (zabbix-agent-activation): Likewise. * gnu/tests/mail.scm (run-exim-test)[test]: Remove (ice-9 ftw) from the imported modules. Ludovic Courtès