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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2020 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu services science)
  #:export (<rshiny-configuration>
            rshiny-configuration
            rshiny-configuration?
            rshiny-configuration-package
            rshiny-configuration-binary
            rshiny-shepherd-service
            rshiny-service-type))

(use-modules (gnu)
             (guix records)
             (ice-9 match))
(use-service-modules shepherd)
(use-package-modules cran)

(define-record-type* <rshiny-configuration>
  rshiny-configuration
  make-rshiny-configuration
  rshiny-configuration?
  (package          rshiny-configuration-package    ; file-like
                    (default r-shiny))
  (binary           rshiny-configuration-binary     ; string
                    (default "rshiny")))

(define rshiny-shepherd-service
  (match-lambda
    (($ <rshiny-configuration> package binary)
     (list
       (shepherd-service
         (documentation (string-append "R-Shiny service for " binary))
         (provision (list (symbol-append 'rshiny- (string->symbol
                                                    (string-take binary 9)))))
         (requirement '(networking))
         (start
           #~(exec-command
               (list
                 #$(string-append "/run/current-system/profile/bin/" binary))
               ;#:log-file #$(string-append "/var/log/" binary ".log") ; kills shepherd
               #:environment-variables
               (list "R_LIBS_USER=/run/current-system/profile/site-library/")))
         (stop #~(make-kill-destructor)))))))

(define rshiny-service-type
  (service-type
    (name 'rshiny)
    (extensions
      (list
        (service-extension shepherd-root-service-type
                           rshiny-shepherd-service)
        (service-extension profile-service-type
                           ;; We want the package installed so that it
                           ;; pulls in the propagated inputs as well.
                           (lambda (config)
                             (list
                               (rshiny-configuration-package config))))))
    (description
     "Run an R-Shiny webapp as a Guix Service.")))
]: New helper function. [builder]: Use crypto-devices. * gnu/machine/ssh.scm (roll-back-managed-host): Use boot-parameters-store-crypto-devices to provide its contents to the bootloader configuration generation process. * gnu/tests/install.scm (%encrypted-root-not-boot-os, %encrypted-root-not-boot-os): New os declaration. (%encrypted-root-not-boot-installation-script): New script, whose contents were initially taken from %encrypted-root-installation-script. (%test-encrypted-root-not-boot-os): New test. * gnu/system.scm (define-module): Export operating-system-bootoader-crypto-devices and boot-parameters-store-crypto-devices. (<boot-parameters>): Add field store-crypto-devices. (read-boot-parameters): Parse store-crypto-devices field. [uuid-sexp->uuid]: New helper function extracted from device-sexp->device. (operating-system-bootloader-crypto-devices): New function. (operating-system-bootcfg): Use operating-system-bootloader-crypto-devices to provide its contents to the bootloader configuration generation process. (operating-system-boot-parameters): Add store-crypto-devices to the generated boot-parameters. (operating-system-boot-parameters-file): Likewise to the file with the serialized structure. * guix/scripts/system.scm (reinstall-bootloader): Use boot-parameters-store-crypto-devices to provide its contents to the bootloader configuration generation process. * tests/boot-parameters.scm (%default-store-crypto-devices): New variable. (%grub-boot-parameters, test-read-boot-parameters): Use %default-store-crypto-devices. (tests store-crypto-devices): New tests. Miguel Ángel Arruga Vivas 2020-11-09machine: ssh: Do not import the host (guix config)....* gnu/machine/ssh.scm (machine-boot-parameters): Use 'make-config.scm' for (guix config). Ludovic Courtès 2020-11-01system: Add store-directory-prefix to boot-parameters....Fixes <http://issues.guix.gnu.org/44196> * gnu/machine/ssh.scm (roll-back-managed-host): Use boot-parameters-store-directory-prefix. * gnu/system.scm (define-module): Export boot-parameters-store-directory-prefix. (<boot-parameters>)[store-directory-prefix]: New field. It is used to generate the correct paths when /gnu/store is installed on a btrfs subvolume whose name doesn't match the final runtime path, as the bootloader doesn't have knowledge about the final mounting points. [boot-parameters-store-directory-prefix]: New accessor. (read-boot-parameters): Read directory-prefix from store field. (operating-system-boot-parameters-file): Add directory-prefix to store field. * guix/scripts/system.scm (reinstall-bootloader): Use boot-parameters-store-directory-prefix. * test/boot-parameters.scm (%default-btrfs-subvolume, %default-store-directory-prefix): New variables. (%grub-boot-parameters): Use %default-store-directory-prefix. (%default-operating-system): Use %default-btrfs-subvolume. (test-boot-parameters): Add directory-prefix. (test optional fields): Add test for directory-prefix. (test os store-directory-prefix): New test. Miguel Ángel Arruga Vivas 2020-10-18system: Provide locale information to the bootloader....* gnu/machine/ssh.scm (roll-back-managed-host): Use locale information from boot-parameters. * gnu/system.scm (operating-system-bootcfg): Provide locale information to the bootloader. * guix/system/script.scm (reinstall-bootloader): Use locale information from boot-parameters. Miguel Ángel Arruga Vivas