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(define-module (gnu services science)
  #:export (<rshiny-configuration>
            rshiny-configuration
            rshiny-configuration?
            rshiny-configuration-package
            rshiny-configuration-binary
            rshiny-shepherd-service
            rshiny-service-type))

(use-modules (gnu)
             (guix records)
             (ice-9 match))
(use-service-modules shepherd)
(use-package-modules cran)

(define-record-type* <rshiny-configuration>
  rshiny-configuration
  make-rshiny-configuration
  rshiny-configuration?
  (package          rshiny-configuration-package    ; package
                    (default r-shiny))
  (binary           rshiny-configuration-binary     ; string
                    (default "rshiny")))

(define rshiny-shepherd-service
  (match-lambda
    (($ <rshiny-configuration> package binary)
     (list
       (shepherd-service
         (documentation (string-append "R-Shiny service for " binary))
         (provision (list (symbol-append 'rshiny- (string->symbol
                                                    (string-take binary 9)))))
         (requirement '(networking))
         (start
           #~(exec-command
               (list
                 #$(string-append "/run/current-system/profile/bin/" binary))
               ;#:log-file #$(string-append "/var/log/" binary ".log") ; kills shepherd
               #:environment-variables
               (list "R_LIBS_USER=/run/current-system/profile/site-library/")))
         (stop #~(make-kill-destructor)))))))

(define rshiny-service-type
  (service-type
    (name 'rshiny)
    (extensions
      (list
        (service-extension shepherd-root-service-type
                           rshiny-shepherd-service)
        (service-extension profile-service-type
                           ;; We want the package installed so that it
                           ;; pulls in the propagated inputs as well.
                           (lambda (config)
                             (list
                               (rshiny-configuration-package config))))))
    (description
     "Run an R-Shiny webapp as a Guix Service.")))
--library-path" to the loader. * guix/scripts/pack.scm (wrapped-package)[build](runpath): New procedure. (elf-loader-compile-flags): Pass "-DLOADER_AUDIT_RUNPATH". * tests/guix-pack-relocatable.sh: Remove 'STORE_PARENT'. (run_without_store): New function. Erase $NIX_STORE_DIR instead of $STORE_PARENT. Use 'run_without_store' throughout. Ludovic Courtès 2020-07-24pack: '-R' applies to propagated inputs too....Fixes <https://bugs.gnu.org/42510>. * guix/scripts/pack.scm (wrapped-manifest-entry): Recurse on 'dependencies' field. * tests/guix-pack-relocatable.sh: Add test. Ludovic Courtès 2020-05-14pack: Add relocation via ld.so and fakechroot....* gnu/packages/aux-files/run-in-namespace.c (HAVE_EXEC_WITH_LOADER): New macro. (bind_mount): Rename to... (mirror_directory): ... this. Add 'firmlink' argument and use it instead of calling mkdir/open/close/mount directly. (bind_mount, make_symlink): New functions. (exec_in_user_namespace): Adjust accordingly. (exec_with_loader) [HAVE_EXEC_WITH_LOADER]: New function. (exec_performance): New function. (engines): Add them. * guix/scripts/pack.scm (wrapped-package)[fakechroot-library] [audit-module]: New procedures. [audit-source]: New variable. [build](elf-interpreter, elf-loader-compile-flags): New procedures. (build-wrapper): Use them. * tests/guix-pack-relocatable.sh: Test with 'GUIX_EXECUTION_ENGINE=fakechroot'. * doc/guix.texi (Invoking guix pack): Document the 'performance' and 'fakechroot' engines. * gnu/packages/aux-files/pack-audit.c: New file. * Makefile.am (AUX_FILES): Add it. Ludovic Courtès 2020-05-14pack: Wrapper honors 'GUIX_EXECUTION_ENGINE' environment variable....* gnu/packages/aux-files/run-in-namespace.c (struct engine): New type. (exec_default): New function. (engines): New variable. (execution_engine): New function. (main): Use it instead of calling 'exec_in_user_namespace' and 'exec_with_proot' directly. * tests/guix-pack-relocatable.sh: Add test with 'GUIX_EXECUTION_ENGINE'. * doc/guix.texi (Invoking guix pack): Document 'GUIX_EXECUTION_ENGINE'. Ludovic Courtès 2020-04-24pack: 'guix pack -R' wrapper correctly reports exit code....Fixes <https://bugs.gnu.org/40816>. Reported by Jan (janneke) Nieuwenhuizen <janneke@gnu.org>. * gnu/packages/aux-files/run-in-namespace.c (main): In the 'default' case, check 'WIFEXITED (status)' and exit with the corresponding code in that case. Exit with 255 in other cases. * tests/guix-pack-relocatable.sh: Add test. Ludovic Courtès 2019-08-23pack: '-R' honors the requested output....Fixes <https://bugs.gnu.org/36925>. Reported by Jesse Gibbons <jgibbons2357@gmail.com>. * guix/scripts/pack.scm (wrapped-package): Add 'output*' parameter. [build]: Define 'input' and 'target'; use them instead of #$package and #$output, respectively. (wrapped-manifest-entry): New procedure. (map-manifest-entries): Call PROC directly. (guix-pack): Pass WRAPPED-MANIFEST-ENTRY to 'map-manifest-entries'. Ludovic Courtès 2019-05-18pack: '--localstatedir' and '-R' tests gracefully handle missing /gnu/store....Fixes <https://bugs.gnu.org/35776>. Reported by Ting-Wei Lan <lantw44@gmail.com>. * tests/guix-pack-localstatedir.sh: Set 'storedir' before 'NIX_STORE_DIR'. * tests/guix-pack-relocatable.sh: Likewise. Ludovic Courtès 2019-05-09tests: Ensure 'unshare' works before relying on it....Fixes <https://bugs.gnu.org/35642>. Reported by Josh Holland <josh@inv.alid.pw>. * tests/guix-pack-relocatable.sh: Before invoking 'unshare' at the bottom, add "if unshare -r true" condition. * tests/guix-pack.sh: Likewise. Ludovic Courtès 2019-03-15pack: "-RR" produces PRoot-enabled relocatable binaries....* gnu/packages/aux-files/run-in-namespace.c (exec_with_proot): New function. (main): When 'clone' fails, call 'rm_rf'. [PROOT_PROGRAM]: When 'clone' fails, call 'exec_with_proot'. * guix/scripts/pack.scm (wrapped-package): Add #:proot?. [proot]: New procedure. [build]: Compile with -DPROOT_PROGRAM when PROOT? is true. * guix/scripts/pack.scm (%options): Set the 'relocatable?' value to 'proot when "-R" is passed several times. (guix-pack): Pass #:proot? to 'wrapped-package'. * tests/guix-pack-relocatable.sh: Use "-RR" on Intel systems that lack user namespace support. * doc/guix.texi (Invoking guix pack): Document -RR. Ludovic Courtès