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(define-module (gnu services science)
  #:export (<rshiny-configuration>
            rshiny-configuration
            rshiny-configuration?
            rshiny-configuration-package
            rshiny-configuration-binary
            rshiny-shepherd-service
            rshiny-service-type))

(use-modules (gnu)
             (guix records)
             (ice-9 match))
(use-service-modules shepherd)
(use-package-modules cran)

(define-record-type* <rshiny-configuration>
  rshiny-configuration
  make-rshiny-configuration
  rshiny-configuration?
  (package          rshiny-configuration-package    ; package
                    (default r-shiny))
  (binary           rshiny-configuration-binary     ; string
                    (default "rshiny")))

(define rshiny-shepherd-service
  (match-lambda
    (($ <rshiny-configuration> package binary)
     (list
       (shepherd-service
         (documentation (string-append "R-Shiny service for " binary))
         (provision (list (symbol-append 'rshiny- (string->symbol
                                                    (string-take binary 9)))))
         (requirement '(networking))
         (start
           #~(exec-command
               (list
                 #$(string-append "/run/current-system/profile/bin/" binary))
               ;#:log-file #$(string-append "/var/log/" binary ".log") ; kills shepherd
               #:environment-variables
               (list "R_LIBS_USER=/run/current-system/profile/site-library/")))
         (stop #~(make-kill-destructor)))))))

(define rshiny-service-type
  (service-type
    (name 'rshiny)
    (extensions
      (list
        (service-extension shepherd-root-service-type
                           rshiny-shepherd-service)
        (service-extension profile-service-type
                           ;; We want the package installed so that it
                           ;; pulls in the propagated inputs as well.
                           (lambda (config)
                             (list
                               (rshiny-configuration-package config))))))
    (description
     "Run an R-Shiny webapp as a Guix Service.")))
ork-tear-down/linux) (static-networking->hurd-pfinet-options): New procedures. (static-networking-shepherd-service): New procedure. (static-networking-shepherd-services): Rewrite in terms of the above. (static-networking-service): Deprecate. Adjust to new 'static-networking' API. (%base-services): Likewise. * gnu/system/install.scm (%installation-services): Likewise. * gnu/system/hurd.scm (%base-services/hurd): Likewise, and separate 'loopback' from 'networking'. * gnu/build/hurd-boot.scm (set-hurd-device-translators): Remove "servers/socket/2". * gnu/tests/networking.scm (run-openvswitch-test)["networking has started on ovs0"]: Check for 'networking instead of 'networking-ovs0, which is no longer provided. * doc/guix.texi (Networking Setup): Document the new interface. Remove documentation of 'static-networking-service'. (Virtualization Services): Change Ganeti example to use the new interface. Ludovic Courtès 2021-10-18system: hurd: Add 'info-reader' to %BASE-PACKAGES/HURD....* gnu/system/hurd.scm (%base-packages/hurd): Add INFO-READER. Ludovic Courtès 2021-08-29Migrate to the new 'targets' field of bootloader-configuration....The old 'target' field is deprecated; adjust the sources to use the new 'targets' one instead. * doc/guix-cookbook.texi<target>: Replace by 'targets'. * gnu/bootloader/grub.scm: Likewise. * gnu/installer/parted.scm: Likewise. * gnu/machine/digital-ocean.scm: Likewise. * gnu/system/examples/asus-c201.tmpl: Likewise * gnu/system/examples/bare-bones.tmpl: Likewise * gnu/system/examples/bare-hurd.tmpl: Likewise * gnu/system/examples/beaglebone-black.tmpl: Likewise * gnu/system/examples/desktop.tmpl: Likewise * gnu/system/examples/docker-image.tmpl: Likewise * gnu/system/examples/lightweight-desktop.tmpl: Likewise * gnu/system/examples/vm-image.tmpl: Likewise * gnu/system/examples/yggdrasil.tmpl: Likewise * gnu/system/hurd.scm: Likewise * gnu/system/images/hurd.scm: Likewise * gnu/system/images/novena.scm: Likewise * gnu/system/images/pine64.scm: Likewise * gnu/system/images/pinebook-pro.scm: Likewise * gnu/system/images/rock64.scm: Likewise * gnu/system/install.scm: Likewise * gnu/system/vm.scm: Likewise * gnu/tests.scm: Likewise * gnu/tests/ganeti.scm: Likewise * gnu/tests/install.scm: Likewise * gnu/tests/nfs.scm: Likewise * gnu/tests/telephony.scm: Likewise * tests/boot-parameters.scm: Likewise * tests/system.scm: Likewise Maxim Cournoyer 2021-08-12system: install, hurd: Use 'setuid-programs'....This is a followup to a7ac19851baab3fbcc40c4b2cf5b00a6ac9cd2f3. * gnu/system/install.scm (installation-os)[setuid-programs]: Use 'setuid-program'. * gnu/system/hurd.scm (%setuid-programs/hurd): Use 'file-like->setuid-program'. Ludovic Courtès 2021-02-22system: hurd: Have the static networking provision 'networking....Some services require networking, I'm looking at the Guix Build Coordinator agent. Networking seems to work in the childhurd VM, so I think this change makes sense. * gnu/system/hurd.scm (%base-services/hurd): Add 'networking to the provision parameter for the static-networking service. Christopher Baines 2020-10-09system: hurd: Add diffutils, patch, gawk, tar, gzip, bzip2, xz, and lzip....* gnu/system/hurd.scm (%base-packages/hurd): Add diffutils, patch, gawk, tar, gzip, bzip2, xz, and lzip. Jan (janneke) Nieuwenhuizen 2020-10-09system: hurd: Include 'guile-3.0-latest' in '%base-packages/hurd'....* gnu/system/hurd.scm (%base-packages/hurd): Change GUILE-3.0 to GUILE-3.0-LATEST. Jan (janneke) Nieuwenhuizen 2020-10-09system: hurd: Add PAM support with shadow and sudo....* gnu/system.scm (hurd-default-essential-services): Add setuid-program-service-type. * gnu/system/hurd.scm (%base-packages/hurd): Add shadow, sudo. (%setuid-programs/hurd): New variable. (%hurd-default-operating-system)[setuid-program]: Use it. [pam-services, sudoers-file]: Remove overrides; enabling regular defaults. * gnu/system/examples/bare-hurd.tmpl (%hurd-os)[users]: New field. [services]: Do not disable PAM in SSH. Jan (janneke) Nieuwenhuizen