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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2020 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu services science)
  #:export (<rshiny-configuration>
            rshiny-configuration
            rshiny-configuration?
            rshiny-configuration-package
            rshiny-configuration-binary
            rshiny-shepherd-service
            rshiny-service-type))

(use-modules (gnu)
             (guix records)
             (ice-9 match))
(use-service-modules shepherd)
(use-package-modules cran)

(define-record-type* <rshiny-configuration>
  rshiny-configuration
  make-rshiny-configuration
  rshiny-configuration?
  (package          rshiny-configuration-package    ; file-like
                    (default r-shiny))
  (binary           rshiny-configuration-binary     ; string
                    (default "rshiny")))

(define rshiny-shepherd-service
  (match-lambda
    (($ <rshiny-configuration> package binary)
     (list
       (shepherd-service
         (documentation (string-append "R-Shiny service for " binary))
         (provision (list (symbol-append 'rshiny- (string->symbol
                                                    (string-take binary 9)))))
         (requirement '(networking))
         (start
           #~(exec-command
               (list
                 #$(string-append "/run/current-system/profile/bin/" binary))
               ;#:log-file #$(string-append "/var/log/" binary ".log") ; kills shepherd
               #:environment-variables
               (list "R_LIBS_USER=/run/current-system/profile/site-library/")))
         (stop #~(make-kill-destructor)))))))

(define rshiny-service-type
  (service-type
    (name 'rshiny)
    (extensions
      (list
        (service-extension shepherd-root-service-type
                           rshiny-shepherd-service)
        (service-extension profile-service-type
                           ;; We want the package installed so that it
                           ;; pulls in the propagated inputs as well.
                           (lambda (config)
                             (list
                               (rshiny-configuration-package config))))))
    (description
     "Run an R-Shiny webapp as a Guix Service.")))
023-03-03services: dbus: Deprecate 'polkit-service' procedure....* doc/guix.texi (Desktop Services): Replace 'polkit-service' with 'polkit-service-type'. * gnu/services/dbus.scm (polkit-service): Deprecate procedure. * gnu/tests/docker.scm (%docker-os): Use polkit-service-type. * gnu/tests/virtualization.scm (%libvirt-os): Ditto. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Bruno Victal 2023-01-30Merge remote-tracking branch 'origin/master' into core-updates... Conflicts: doc/guix.texi gnu/local.mk gnu/packages/admin.scm gnu/packages/base.scm gnu/packages/chromium.scm gnu/packages/compression.scm gnu/packages/databases.scm gnu/packages/diffoscope.scm gnu/packages/freedesktop.scm gnu/packages/gnome.scm gnu/packages/gnupg.scm gnu/packages/guile.scm gnu/packages/inkscape.scm gnu/packages/llvm.scm gnu/packages/openldap.scm gnu/packages/pciutils.scm gnu/packages/ruby.scm gnu/packages/samba.scm gnu/packages/sqlite.scm gnu/packages/statistics.scm gnu/packages/syndication.scm gnu/packages/tex.scm gnu/packages/tls.scm gnu/packages/version-control.scm gnu/packages/xml.scm guix/build-system/copy.scm guix/scripts/home.scm Efraim Flashner 2023-01-16gnu: services: Export polkit-configuration....Export for user customization. * gnu/services/dbus.scm (polkit-configuration): Export. (polkit-configuration?): Export. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Zhu Zihao 2022-08-28gnu: polkit-mozjs: Rename to polkit and remove obsolete polkit-duktape....Polkit 121 now uses duktape as the default JavaScript engine. * gnu/packages/polkit.scm (polkit-mozjs): Rename to... (polkit): ... this. [import-modules, modules]: New arguments. [configure-flags]: Drop non-default "js_engine=mozjs" option. [phases]{adjust-install-time-etc-directory, patch-bash}: New phases. {check}: New override. [inputs]: Replace mozjs-91 with duktape. [native-inputs]: Add python, python-dbusmock and tini. (polkit-duktape): Delete variable. (polkit-for-system): Delete procedure. (polkit) Delete syntax. * gnu/services/dbus.scm (%default-polkit): Delete variable. (<polkit-configuration>): Adjust accordingly. Maxim Cournoyer 2022-06-14services: dbus: Add a VERBOSE? configuration option....* gnu/services/dbus.scm (<dbus-configuration>)[verbose?]: New field. (dbus-shepherd-service): Use it. (dbus-service)[verbose?]: Add argument and update doc. * doc/guix.texi (Desktop Services): Document it. Maxim Cournoyer 2022-02-19services: dbus: Increase auth_timeout value to 5 minutes....This is a follow-up to 488f1c589df; the problem had re-appeared on my machine. * gnu/services/dbus.scm (dbus-configuration-directory): Increase 'auth_timeout' value from 60000 to 300000 ms (5 minutes). Maxim Cournoyer 2021-12-22services: dbus: Wait 1 minute for elogind to get ready....Fixes <https://issues.guix.gnu.org/issue/52051>. * gnu/services/dbus.scm (dbus-configuration-directory): Set a 60 second authentication timeout in the D-Bus configuration. Timothy Sample 2021-12-05Merge remote-tracking branch 'origin/master' into core-updates-frozenRicardo Wurmus 2021-11-30services: Accept <inferior-package>s in lieu of <package>s....* gnu/services/authentication.scm (fprintd-configuration) (nslcd-configuration): Substitute file-like objects for package ones. * gnu/services/cgit.scm (cgit-configuration, opaque-cgit-configuration): Likewise. * gnu/services/cups.scm (package-list?, cups-configuration): Likewise. * gnu/services/dns.scm (verify-knot-configuration) (ddclient-configuration): Likewise. * gnu/services/docker.scm (docker-configuration): Likewise. * gnu/services/file-sharing.scm (transmission-daemon-configuration): Likewise. * gnu/services/getmail.scm (getmail-configuration): Likewise. * gnu/services/mail.scm (dovecot-configuration) (opaque-dovecot-configuration): Likewise. * gnu/services/messaging.scm (prosody-configuration) (opaque-prosody-configuration): Likewise. * gnu/services/monitoring.scm (zabbix-server-configuration) (zabbix-agent-configuration): Likewise. * gnu/services/networking.scm (opendht-configuration): Likewise. * gnu/services/pm.scm (tlp-configuration): Likewise. * gnu/services/telephony.scm (jami-configuration): Likewise. * gnu/services/virtualization.scm (libvirt-configuration) (qemu-guest-agent-configuration): Likewise. * gnu/services/vpn.scm (openvpn-client-configuration): Likewise. Tobias Geerinckx-Rice 2021-11-27services: polkit: Choose between polkit-mozjs and polkit-duktape....* gnu/services/dbus.scm (%default-polkit): New variable. (<polkit-configuration>)[polkit]: Default to it. Ludovic Courtès