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path: root/gnu/packages/patches/vsearch-unbundle-cityhash.patch
blob: 2a2ab13a73f7f1eaf39d46d7327c6a32f981785f (about) (plain)
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diff --git a/src/Makefile.am b/src/Makefile.am
index e56a8a2..4adcc48 100644
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -3,7 +3,7 @@ bin_PROGRAMS = $(top_builddir)/bin/vsearch
 if TARGET_PPC
 AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -mcpu=power8
 else
-AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic
+AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -lcityhash
 endif
 
 AM_CFLAGS=$(AM_CXXFLAGS)
@@ -18,8 +18,6 @@ allpairs.h \
 arch.h \
 bitmap.h \
 chimera.h \
-city.h \
-citycrc.h \
 cluster.h \
 cpu.h \
 db.h \
@@ -59,31 +57,26 @@ xstring.h
 
 if TARGET_PPC
 libcpu_a_SOURCES = cpu.cc $(VSEARCHHEADERS)
-noinst_LIBRARIES = libcpu.a libcityhash.a
+noinst_LIBRARIES = libcpu.a
 else
 libcpu_sse2_a_SOURCES = cpu.cc $(VSEARCHHEADERS)
 libcpu_sse2_a_CXXFLAGS = $(AM_CXXFLAGS) -msse2
 libcpu_ssse3_a_SOURCES = cpu.cc $(VSEARCHHEADERS)
 libcpu_ssse3_a_CXXFLAGS = $(AM_CXXFLAGS) -mssse3 -DSSSE3
-noinst_LIBRARIES = libcpu_sse2.a libcpu_ssse3.a libcityhash.a
+noinst_LIBRARIES = libcpu_sse2.a libcpu_ssse3.a
 endif
 
-libcityhash_a_SOURCES = city.cc city.h
-
 if TARGET_WIN
 
-libcityhash_a_CXXFLAGS = $(AM_CXXFLAGS) -Wno-sign-compare -D_MSC_VER
-__top_builddir__bin_vsearch_LDFLAGS = -static
-__top_builddir__bin_vsearch_LDADD = libregex.a libcityhash.a libcpu_ssse3.a libcpu_sse2.a
+__top_builddir__bin_vsearch_LDFLAGS = -static -lcityhash
+__top_builddir__bin_vsearch_LDADD = libregex.a libcpu_ssse3.a libcpu_sse2.a
 
 else
 
-libcityhash_a_CXXFLAGS = $(AM_CXXFLAGS) -Wno-sign-compare
-
 if TARGET_PPC
-__top_builddir__bin_vsearch_LDADD = libcityhash.a libcpu.a
+__top_builddir__bin_vsearch_LDADD = libcpu.a
 else
-__top_builddir__bin_vsearch_LDADD = libcityhash.a libcpu_ssse3.a libcpu_sse2.a
+__top_builddir__bin_vsearch_LDADD = libcpu_ssse3.a libcpu_sse2.a
 endif
 
 endif
diff --git a/src/vsearch.h b/src/vsearch.h
index f2c244b..5f51bbe 100644
--- a/src/vsearch.h
+++ b/src/vsearch.h
@@ -148,7 +148,7 @@
 #include <bzlib.h>
 #endif
 
-#include "city.h"
+#include <city.h>
 #include "md5.h"
 #include "sha1.h"
 
Document 'GUIX_EXECUTION_ENGINE'. Ludovic Courtès 2020-04-24pack: 'guix pack -R' wrapper correctly reports exit code....Fixes <https://bugs.gnu.org/40816>. Reported by Jan (janneke) Nieuwenhuizen <janneke@gnu.org>. * gnu/packages/aux-files/run-in-namespace.c (main): In the 'default' case, check 'WIFEXITED (status)' and exit with the corresponding code in that case. Exit with 255 in other cases. * tests/guix-pack-relocatable.sh: Add test. Ludovic Courtès 2019-08-23pack: '-R' honors the requested output....Fixes <https://bugs.gnu.org/36925>. Reported by Jesse Gibbons <jgibbons2357@gmail.com>. * guix/scripts/pack.scm (wrapped-package): Add 'output*' parameter. [build]: Define 'input' and 'target'; use them instead of #$package and #$output, respectively. (wrapped-manifest-entry): New procedure. (map-manifest-entries): Call PROC directly. (guix-pack): Pass WRAPPED-MANIFEST-ENTRY to 'map-manifest-entries'. Ludovic Courtès 2019-05-18pack: '--localstatedir' and '-R' tests gracefully handle missing /gnu/store....Fixes <https://bugs.gnu.org/35776>. Reported by Ting-Wei Lan <lantw44@gmail.com>. * tests/guix-pack-localstatedir.sh: Set 'storedir' before 'NIX_STORE_DIR'. * tests/guix-pack-relocatable.sh: Likewise. Ludovic Courtès 2019-05-09tests: Ensure 'unshare' works before relying on it....Fixes <https://bugs.gnu.org/35642>. Reported by Josh Holland <josh@inv.alid.pw>. * tests/guix-pack-relocatable.sh: Before invoking 'unshare' at the bottom, add "if unshare -r true" condition. * tests/guix-pack.sh: Likewise. Ludovic Courtès 2019-03-15pack: "-RR" produces PRoot-enabled relocatable binaries....* gnu/packages/aux-files/run-in-namespace.c (exec_with_proot): New function. (main): When 'clone' fails, call 'rm_rf'. [PROOT_PROGRAM]: When 'clone' fails, call 'exec_with_proot'. * guix/scripts/pack.scm (wrapped-package): Add #:proot?. [proot]: New procedure. [build]: Compile with -DPROOT_PROGRAM when PROOT? is true. * guix/scripts/pack.scm (%options): Set the 'relocatable?' value to 'proot when "-R" is passed several times. (guix-pack): Pass #:proot? to 'wrapped-package'. * tests/guix-pack-relocatable.sh: Use "-RR" on Intel systems that lack user namespace support. * doc/guix.texi (Invoking guix pack): Document -RR. Ludovic Courtès 2018-11-06pack: Add test for '--relocatable'....* tests/guix-pack-relocatable.sh: New file. * Makefile.am (SH_TESTS): Add it. Ludovic Courtès