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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017 Quiliro <quiliro@fsfla.org>
;;; Copyright © 2022 Petr Hodina <phodina@protonmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages medical)
  #:use-module (guix build-system python)
  #:use-module (guix build-system qt)
  #:use-module (guix download)
  #:use-module (guix gexp)
  #:use-module (guix licenses)
  #:use-module (guix packages)
  #:use-module (gnu packages bash) ; wrap-program
  #:use-module (gnu packages databases)
  #:use-module (gnu packages kde-frameworks) ; kirigami
  #:use-module (gnu packages python)
  #:use-module (gnu packages python-crypto)
  #:use-module (gnu packages python-web)
  #:use-module (gnu packages python-xyz)
  #:use-module (gnu packages qt))

(define-public mygnuhealth
  (package
    (name "mygnuhealth")
    (version "1.0.5")
    (source (origin
              (method url-fetch)
              (uri (pypi-uri "MyGNUHealth" version))
              (sha256
               (base32
                "1jcrriccqzb4jx7zayhiqmpvi3cvfy3bbf9zr3m83878f94yww8j"))))
    (build-system python-build-system)
    (arguments
     (list
      #:imported-modules `(,@%python-build-system-modules
                           ,@%qt-build-system-modules)
      #:modules `(((guix build qt-build-system) #:prefix qt:)
                  (guix build python-build-system)
                  (guix build utils))
      #:phases #~(modify-phases %standard-phases
                   (add-after 'install 'qt-wrap
                     (assoc-ref qt:%standard-phases 'qt-wrap))
                   (add-before 'check 'env-setup
                     (lambda _
                       (mkdir-p "/tmp/mygh/")
                       (setenv "HOME" "/tmp"))))))
    (native-inputs (list python-pyside-2))
    (inputs (list bash-minimal
                  kirigami
                  python
                  python-bcrypt
                  python-matplotlib
                  python-requests
                  python-tinydb
                  qtbase-5
                  qtdeclarative-5
                  qtgraphicaleffects
                  qtquickcontrols-5
                  qtquickcontrols2-5
                  qtsvg-5))
    (home-page "https://www.gnuhealth.org")
    (synopsis "The GNU Health Personal Health Record")
    (description
     "This package provides GNUHealth Personal Health Record
application for desktop and mobile devices that integrates with the GNU
Health Federation.")
    (license gpl3+)))

(define-public openmolar-1
  (package
   (name "openmolar")
   (version "1.0.15-gd81f9e5")
   (source (origin
             (method url-fetch)
             (uri (string-append
                   "https://static.openmolar.com/om1/releases/openmolar-"
                   version ".tar.gz"))
             (sha256
              (base32
               "1cfdzfbi6wslw7k0dc6ad6xrgs75iwsl91cg73w4myswaqqkfk3z"))))
   (build-system python-build-system)
   (arguments
    `(#:use-setuptools? #f
      #:phases
      (modify-phases %standard-phases
        (add-after 'unpack 'patch-/usr
          (lambda* (#:key outputs #:allow-other-keys)
            (substitute* "setup.py"
              (("/usr") (assoc-ref outputs "out")))
            #t)))))
   (inputs
    (list python-pyqt+qscintilla python-mysqlclient qscintilla))
   (home-page "https://openmolar.com/om1")
   (synopsis "Dental practice management software")
   (description "Openmolar is a dental practice management suite.  Its
functionality includes appointments, patient records, treatment planning,
billing etc.  It is a full featured, reliable and thoroughly tested
application and has been translated into many languages.")
   (license gpl3+)))
ds, python-tmx, sfxr, quesoglc) (eureka, plib)[home-page]: Likewise. * gnu/packages/games.scm (abe, alex4, armagetronad, barony) (foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally) (cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki) (quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks) (flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise. * gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise. * gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise. * gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish) (workrave)[home-page]: Likewise. * gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise. * gnu/packages/graph.scm (mscgen)[home-page]: Likewise. * gnu/packages/graphics.scm (assimp, alembic, ctl, agg) (opencsg)[home-page]: Likewise. * gnu/packages/graphviz.scm (gts)[home-page]: Likewise. * gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise. * gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise. * gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise. * gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise. * gnu/packages/haskell-web.scm (ghc-http-client-restricted) (ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg) (ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats) (ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints) (ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon) (ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards) (ghc-template-haskell, ghc-boot-th, ghc-binary-orphans) (ghc-postgresql-simple)[home-page]: Likewise. * gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise. * gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise. * gnu/packages/image-processing.scm (mia)[home-page]: Likewise. * gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr) (qiv)[home-page]: Likewise. * gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib) (sng, mtpaint)[home-page]: Likewise. * gnu/packages/java-xml.scm (java-simple-xml, java-jaxp) (java-apache-xml-commons-resolver)[home-page]: Likewise. * gnu/packages/java.scm (java-cisd-base, java-cisd-args4j) (java-hamcrest-core, java-jsr305, java-eclipse-osgi) (java-eclipse-equinox-common, java-eclipse-core-jobs) (java-eclipse-equinox-registry, java-eclipse-equinox-app) (java-eclipse-equinox-preferences, java-eclipse-core-contenttype) (java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq) (java-cdi-api)[home-page]: Likewise. * gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise. * gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]: Likewise. * gnu/packages/kde-internet.scm (kget)[home-page]: Likewise. * gnu/packages/kde-systemtools.scm (dolphin-plugins) (konsole)[home-page]: Likewise. * gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise. * gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise. * gnu/packages/lego.scm (nqc)[home-page]: Likewise. * gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise. * gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise. * gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise. * gnu/packages/libffi.scm (libffi)[home-page]: Likewise. * gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]: Likewise. * gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise. * gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools) (kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise. * gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser) (sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore) (sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell) (sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise. * gnu/packages/lisp.scm (lush2)[home-page]: Likewise. * gnu/packages/logging.scm (log4cpp)[home-page]: Likewise. * gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise. * gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]: Likewise. * gnu/packages/mail.scm (muchsync, procmail, sendmail) (opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise. * gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise. * gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh) (metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3) (frama-c)[home-page]: Likewise. * gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]: Likewise. * gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise. * gnu/packages/monitoring.scm (python-whisper, python-carbon) (hostscope)[home-page]: Likewise. * gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321) (lame)[home-page]: Likewise. * gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise. * gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol) (portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot) (schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2) (shiru-lv2)[home-page]: Likewise. * gnu/packages/ncurses.scm (stfl)[home-page]: Likewise. * gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird) (tunctl, traceroute)[home-page]: Likewise. * gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise. * gnu/packages/ntp.scm (openntpd)[home-page]: Likewise. * gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib) (ocaml-graph, cubicle)[home-page]: Likewise. * gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise. * gnu/packages/package-management.scm (xstow, modules)[home-page]: Likewise. * gnu/packages/parallel.scm (xjobs)[home-page]: Likewise. * gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]: Likewise. * gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]: Likewise. * gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]: Likewise. * gnu/packages/plan9.scm (drawterm)[home-page]: Likewise. * gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]: Likewise. * gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise. * gnu/packages/profiling.scm (otf2)[home-page]: Likewise. * gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise. * gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise. * gnu/packages/python-web.scm (python-cssutils) (python-translationstring)[home-page]: Likewise. * gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml) (python-docutils, python-pexpect, python-importlib-resources) (python-simplegeneric, python-urwid, python-xlrd, python-xlwt) (python-pyasn1, python-pythondialog, python-tftpy, python-random2) (python-arcp, python-pyopengl, python-sortedcollections) (python-sortedcontainers, python-yapsy, python-pydispatcher) (python-posix-ipc)[home-page]: Likewise. * gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise. * gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise. * gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise. * gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise. * gnu/packages/regex.scm (tre)[home-page]: Likewise. * gnu/packages/rsync.scm (librsync)[home-page]: Likewise. * gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox) (ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise. * gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise. * gnu/packages/screen.scm (dtach)[home-page]: Likewise. * gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise. * gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise. * gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise. * gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]: Likewise. * gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise. * gnu/packages/speech.scm (espeak)[home-page]: Likewise. * gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise. * gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice) (r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable) (python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm) (r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]: Likewise. * gnu/packages/swig.scm (swig)[home-page]: Likewise. * gnu/packages/task-management.scm (wtime)[home-page]: Likewise. * gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise. * gnu/packages/terminals.scm (libtermkey, mlterm, libvterm) (libvterm)[home-page]: Likewise. * gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs) (texlive-csplain, biber, texmaker)[home-page]: Likewise. * gnu/packages/text-editors.scm (joe)[home-page]: Likewise. * gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise. * gnu/packages/tv.scm (tvtime)[home-page]: Likewise. * gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise. * gnu/packages/upnp.scm (libupnp)[home-page]: Likewise. * gnu/packages/version-control.scm (cvs)[home-page]: Likewise. * gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib) (liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl) (dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise. * gnu/packages/virtualization.scm (bochs)[home-page]: Likewise. * gnu/packages/w3m.scm (w3m)[home-page]: Likewise. * gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi) (tidy-html, htmlcxx)[home-page]: Likewise. * gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise. * gnu/packages/wv.scm (wv)[home-page]: Likewise. * gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise. * gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise. * gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise. * gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c) (opensp)[home-page]: Likewise. * gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise. Tobias Geerinckx-Rice 2022-11-23gnu: Add cl-cacau....* gnu/packages/lisp-check.scm (cl-cacau, ecl-cacau, sbcl-cacau): New variables. Signed-off-by: Christopher Baines <mail@cbaines.net> Sharlatan Hellseher 2022-11-23gnu: Add cl-assert-p....* gnu/packages/lisp-check.scm (cl-assert-p, ecl-assert-p, sbcl-assert-p): New variables. Signed-off-by: Christopher Baines <mail@cbaines.net> Sharlatan Hellseher 2022-11-23gnu: Add cl-assertion-error....* gnu/packages/lisp-check.scm (cl-assertion-error, ecl-assertion-error, sbcl-assertion-error): New variables. Signed-off-by: Christopher Baines <mail@cbaines.net> Sharlatan Hellseher 2022-11-23gnu: Add cl-simplet....* gnu/packages/lisp-check.scm (cl-simplet, ecl-simplet, sbcl-simplet): New variables. Signed-off-by: Christopher Baines <mail@cbaines.net> Sharlatan Hellseher 2022-11-22gnu: cl-parachute: Update to 1.5.0-0.8bc3e1b....* gnu/packages/lisp-check.scm (sbcl-parachute): Update to 1.5.0-0.8bc3e1b. [inputs]: Add sbcl-trivial-custom-debugger. * gnu/packages/lisp-xyz.scm (sbcl-trivial-custom-debugger) [arguments]: New field. [native-inputs]: Remove field. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience 2022-09-22gnu: sbcl-lisp-unit2: Update to 0.9.4....* gnu/packages/lisp-check.scm (sbcl-lisp-unit2): Update to 0.9.4. Pierre Neidhardt 2022-09-07gnu: cl-lisp-unit2: Update to 0.9.3....* gnu/packages/lisp-check.scm (sbcl-lisp-unit2): Update to 0.9.3. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> André A. Gomes 2022-09-07gnu: Add cl-2am....* gnu/packages/lisp-check.scm (cl-2am, ecl-2am, sbcl-2am): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> jgart 2022-08-03gnu: Remove obsolete references to asd-files and test-asd-file....In a previous commit we've update the build system to let ASDF locate the .asd files for us, so package definition no longer need to provide this information. * gnu/packages/lisp-check.scm: Do it. * gnu/packages/lisp-xyz.scm: Do it. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Pierre Neidhardt 2022-07-08gnu: sbcl-xlunit: Remove Make reference from closure....* gnu/packages/lisp-check.scm (sbcl-xlunit)[source]: Delete the 'debian' folder. This takes the closure size from 209 MiB down to 151 MiB. Pierre Neidhardt 2022-07-08gnu: sbcl-ptester: Remove Make reference from closure....* gnu/packages/lisp-check.scm (sbcl-ptester)[source]: Delete the 'debian' folder. This takes the closure size from 209 MiB down to 151 MiB. Pierre Neidhardt 2022-07-08gnu: sbcl-rt: Remove Make reference from closure....* gnu/packages/lisp-check.scm (sbcl-rt)[source]: Delete the 'debian' folder. This takes the closure size from 209 MiB down to 151 MiB. Pierre Neidhardt 2022-06-30gnu: sbcl-parachute: Update to 20210920....* gnu/packages/lisp-check.scm (sbcl-parachute): Update to 20210920. Pierre Neidhardt