aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/julia.scm
blob: d358a003e75274c55eee252f7cd218c078aa1882 (about) (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015, 2016 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages julia)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (guix packages)
  #:use-module (guix download)
  #:use-module (guix utils)
  #:use-module (guix git-download)
  #:use-module (guix build-system gnu)
  #:use-module (gnu packages)
  #:use-module (gnu packages algebra)
  #:use-module (gnu packages base)
  #:use-module (gnu packages elf)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages llvm)
  #:use-module (gnu packages libevent)
  #:use-module (gnu packages libunwind)
  #:use-module (gnu packages maths)
  #:use-module (gnu packages multiprecision) ; mpfr
  #:use-module (gnu packages pcre)
  #:use-module (gnu packages perl)
  #:use-module (gnu packages pkg-config)
  #:use-module (gnu packages python)
  #:use-module (gnu packages textutils)
  #:use-module (gnu packages version-control)
  #:use-module (gnu packages wget)
  #:use-module (ice-9 match))

(define libuv-julia
  (let ((commit "efb40768b7c7bd9f173a7868f74b92b1c5a61a0e")
        (revision "3"))
    (package (inherit libuv)
      (name "libuv-julia")
      (version (string-append "0.11.26." revision "-" (string-take commit 8)))
      (source (origin
                (method git-fetch)
                (uri (git-reference
                      (url "https://github.com/JuliaLang/libuv.git")
                      (commit commit)))
                (file-name (string-append name "-" version "-checkout"))
                (sha256
                 (base32
                  "16k6pm2jl0ymz5j4ldxn94imdimahqqfd2izgr3zf1vwyyay77w3"))))
      (build-system gnu-build-system)
      (arguments
       (substitute-keyword-arguments (package-arguments libuv)
         ((#:phases phases)
          `(modify-phases ,phases
             (delete 'autogen)))))
      (home-page "https://github.com/JuliaLang/libuv"))))

(define-public julia
  (package
    (name "julia")
    (version "0.4.5")
    (source (origin
              (method url-fetch)
              (uri (string-append
                    "https://github.com/JuliaLang/julia/releases/download/v"
                    version "/julia-" version "-full.tar.gz"))
              (sha256
               (base32
                "1nbi78fav5f4zj5332iwm4mfk0qhd5qh61z881q69rvp7b163wyb"))))
    (build-system gnu-build-system)
    (arguments
     `(#:test-target "test"
       #:modules ((ice-9 match)
                  (guix build gnu-build-system)
                  (guix build utils))


       ;; The DSOs use $ORIGIN to refer to each other, but (guix build
       ;; gremlin) doesn't support it yet, so skip this phase.
       #:validate-runpath? #f

       #:phases
       (modify-phases %standard-phases
         (delete 'configure)
         (add-after 'unpack 'hardcode-soname-map
          ;; ./src/ccall.cpp creates a map from library names to paths using the
          ;; output of "/sbin/ldconfig -p".  Since ldconfig is not used in Guix,
          ;; we patch ccall.cpp to contain a static map.
          (lambda* (#:key inputs #:allow-other-keys)
            (use-modules (ice-9 match))
            (substitute* "src/ccall.cpp"
              (("jl_read_sonames.*;")
               (string-join
                (map (match-lambda
                       ((input libname soname)
                        (string-append
                         "sonameMap[\"" libname "\"] = "
                         "\"" (assoc-ref inputs input) "/lib/" soname "\";")))
                     '(("libc"        "libc"           "libc.so.6")
                       ("pcre2"       "libpcre2-8"     "libpcre2-8.so")
                       ("mpfr"        "libmpfr"        "libmpfr.so")
                       ("openblas"    "libblas"        "libopenblas.so")
                       ("arpack-ng"   "libarpack"      "libarpack.so")
                       ("lapack"      "liblapack"      "liblapack.so")
                       ("libgit2"     "libgit2"        "libgit2.so")
                       ("gmp"         "libgmp"         "libgmp.so")
                       ("openlibm"    "libopenlibm"    "libopenlibm.so")
                       ("openspecfun" "libopenspecfun" "libopenspecfun.so")
                       ("fftw"        "libfftw3"       "libfftw3.so")
                       ("fftwf"       "libfftw3f"      "libfftw3f.so"))))))
            #t))
         (add-before 'build 'fix-include-and-link-paths
          (lambda* (#:key inputs #:allow-other-keys)
            ;; LIBUTF8PROC is a linker flag, not a build target.  It is
            ;; included in the LIBFILES_* variable which is used as a
            ;; collection of build targets and a list of libraries to link
            ;; against.
            (substitute* "src/flisp/Makefile"
              (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\): \\$\\(OBJS\\) \\$\\(LIBFILES_release\\)")
               "$(BUILDDIR)/$(EXENAME): $(OBJS) $(LLT_release)")
              (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\)-debug: \\$\\(DOBJS\\) \\$\\(LIBFILES_debug\\)")
               "$(BUILDDIR)/$(EXENAME)-debug: $(DOBJS) $(LLT_debug)"))

            ;; The REPL must be linked with libuv.
            (substitute* "ui/Makefile"
              (("JLDFLAGS \\+= ")
               (string-append "JLDFLAGS += "
                              (assoc-ref %build-inputs "libuv")
                              "/lib/libuv.so ")))

            (substitute* "deps/Makefile"
              (("/usr/include/double-conversion")
               (string-append (assoc-ref %build-inputs "double-conversion")
                              "/include/double-conversion")))
            (substitute* "base/Makefile"
              (("\\$\\(build_includedir\\)/uv-errno.h")
               (string-append (assoc-ref inputs "libuv")
                              "/include/uv-errno.h")))
            #t))
         (add-before 'build 'replace-default-shell
          (lambda _
            (substitute* "base/client.jl"
              (("/bin/sh") (which "sh")))
            #t))
         (add-after 'unpack 'hardcode-paths
           (lambda _
             (substitute* "base/interactiveutil.jl"
               (("`which") (string-append "`" (which "which")))
               (("`wget")  (string-append "`" (which "wget"))))
             #t))
         (add-before 'check 'disable-broken-tests
           (lambda _
             (substitute* "test/choosetests.jl"
               ;; These tests time out.  See
               ;; https://github.com/JuliaLang/julia/issues/14374 for ongoing
               ;; discussion.
               (("\"replcompletions\",") "")
               (("\"repl\",") ""))
             (substitute* "test/repl.jl"
               ;; This test fails because we cannot escape the build
               ;; directory.
               (("@test pwd\\(\\) == homedir\\(\\)") "#"))
             #t)))
       #:make-flags
       (list
        (string-append "prefix=" (assoc-ref %outputs "out"))

        ;; Passing the MARCH flag is necessary to build binary substitutes for
        ;; the supported architectures.
        ,(match (or (%current-target-system)
                    (%current-system))
           ("x86_64-linux" "MARCH=x86-64")
           ("i686-linux" "MARCH=pentium4")
           ;; Prevent errors when querying this package on unsupported
           ;; platforms, e.g. when running "guix package --search="
           (_ "MARCH=UNSUPPORTED"))

        "CONFIG_SHELL=bash"     ;needed to build bundled libraries
        "USE_SYSTEM_DSFMT=0"    ;not packaged for Guix and upstream has no
                                ;build system for a shared library.
        "USE_SYSTEM_RMATH=0"    ;Julia uses a bundled version of R's math
                                ;library, patched to use the DSFMT RNG.

        "USE_SYSTEM_LAPACK=1"
        "USE_SYSTEM_BLAS=1"
        "USE_BLAS64=0"          ;needed when USE_SYSTEM_BLAS=1

        "USE_SYSTEM_FFTW=1"
        "LIBFFTWNAME=libfftw3"
        "LIBFFTWFNAME=libfftw3f"

        ;; TODO: Suitesparse does not install shared libraries, so we cannot
        ;; use the suitesparse package.
        ;; "USE_SYSTEM_SUITESPARSE=1"
        ;; (string-append "SUITESPARSE_INC=-I "
        ;;                (assoc-ref %build-inputs "suitesparse")
        ;;                "/include")

        "USE_GPL_LIBS=1"        ;proudly
        "USE_SYSTEM_GRISU=1"    ;for double-conversion
        "USE_SYSTEM_UTF8PROC=1"
        (string-append "UTF8PROC_INC="
                       (assoc-ref %build-inputs "utf8proc")
                       "/include")
        "USE_SYSTEM_LLVM=1"
        "USE_SYSTEM_LIBUNWIND=1"
        "USE_SYSTEM_LIBUV=1"
        (string-append "LIBUV="
                       (assoc-ref %build-inputs "libuv")
                       "/lib/libuv.so")
        (string-append "LIBUV_INC="
                       (assoc-ref %build-inputs "libuv")
                       "/include")
        "USE_SYSTEM_PATCHELF=1"
        "USE_SYSTEM_PCRE=1"
        "USE_SYSTEM_OPENLIBM=1"
        "USE_SYSTEM_GMP=1"
        "USE_SYSTEM_MPFR=1"
        "USE_SYSTEM_ARPACK=1"
        "USE_SYSTEM_LIBGIT2=1"
        "USE_SYSTEM_OPENSPECFUN=1")))
    (inputs
     `(("llvm" ,llvm-3.5)
       ("arpack-ng" ,arpack-ng)
       ("coreutils" ,coreutils) ;for bindings to "mkdir" and the like
       ("lapack" ,lapack)
       ("openblas" ,openblas) ;Julia does not build with Atlas
       ("libunwind" ,libunwind)
       ("openlibm" ,openlibm)
       ("openspecfun" ,openspecfun)
       ("double-conversion" ,double-conversion)
       ("libgit2" ,libgit2)
       ("fftw" ,fftw)
       ("fftwf" ,fftwf)
       ("fortran" ,gfortran)
       ("libuv" ,libuv-julia)
       ("pcre2" ,pcre2)
       ("utf8proc" ,utf8proc)
       ("mpfr" ,mpfr)
       ("wget" ,wget)
       ("which" ,which)
       ("gmp" ,gmp)))
    (native-inputs
     `(("perl" ,perl)
       ("patchelf" ,patchelf)
       ("pkg-config" ,pkg-config)
       ("python" ,python-2)))
    ;; Julia is not officially released for ARM and MIPS.
    ;; See https://github.com/JuliaLang/julia/issues/10639
    (supported-systems '("i686-linux" "x86_64-linux"))
    (home-page "http://julialang.org/")
    (synopsis "High-performance dynamic language for technical computing")
    (description
     "Julia is a high-level, high-performance dynamic programming language for
technical computing, with syntax that is familiar to users of other technical
computing environments.  It provides a sophisticated compiler, distributed
parallel execution, numerical accuracy, and an extensive mathematical function
library.")
    (license license:expat)))