aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/graphviz.scm
blob: 18f4fc147dc7582d73c47dd701a5b4a2f3d3b7ac (about) (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013, 2015, 2021, 2023 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2015, 2020 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Theodoros Foradis <theodoros@foradis.org>
;;; Copyright © 2017, 2018, 2019, 2022 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Gábor Boskovits <boskovits@gmail.com>
;;; Copyright © 2018 Mathieu Lirzin <mthl@gnu.org>
;;; Copyright © 2020, 2022 Marius Bakke <marius@gnu.org>
;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com>
;;; Copyright © 2020 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2021 Bonface Munyoki Kilyungi <me@bonfacemunyoki.com>
;;; Copyright © 2021 Giacomo Leidi <goodoldpaul@autistici.org>
;;; Copyright © 2021 Justin Veilleux <terramorpha@cock.li>
;;; Copyright © 2021 Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
;;; Copyright © 2024 Artyom V. Poptsov <poptsov.artyom@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages graphviz)
  #:use-module (guix packages)
  #:use-module (guix build-system gnu)
  #:use-module (guix build-system pyproject)
  #:use-module (guix build-system python)
  #:use-module (guix download)
  #:use-module (guix git-download)
  #:use-module (guix utils)
  #:use-module (guix gexp)
  #:use-module (gnu packages)
  #:use-module (gnu packages autotools)
  #:use-module (gnu packages bash)
  #:use-module (gnu packages bison)
  #:use-module (gnu packages check)
  #:use-module (gnu packages compression)
  #:use-module (gnu packages fontutils)
  #:use-module (gnu packages gd)
  #:use-module (gnu packages gl)
  #:use-module (gnu packages glib)
  #:use-module (gnu packages gnome)
  #:use-module (gnu packages gtk)
  #:use-module (gnu packages guile)
  #:use-module (gnu packages image)
  #:use-module (gnu packages pkg-config)
  #:use-module (gnu packages python)
  #:use-module (gnu packages python-build)
  #:use-module (gnu packages python-check)
  #:use-module (gnu packages python-xyz)
  #:use-module (gnu packages sphinx)
  #:use-module (gnu packages swig)
  #:use-module (gnu packages tex)
  #:use-module (gnu packages vulkan)
  #:use-module (gnu packages xml)
  #:use-module (gnu packages xorg)
  #:use-module ((guix licenses) #:prefix license:))

(define-public graphviz
  (package
    (name "graphviz")
    (version "7.0.1")
    (source (origin
              (method url-fetch)
              (uri (string-append "https://gitlab.com/api/v4/projects/4207231"
                                  "/packages/generic/graphviz-releases/"
                                  version "/graphviz-" version ".tar.xz"))
              (sha256
               (base32
                "1b6x3g03j7q77lzyvdp34hkzld5sg1l1ippc6sh1qxnmm59xs3ly"))))
    (build-system gnu-build-system)
    (arguments
     ;; FIXME: rtest/rtest.sh is a ksh script (!).  Add ksh as an input.
     (list #:tests? #f
           #:phases
           #~(modify-phases %standard-phases
               (add-after 'install 'move-guile-bindings
                 (lambda* (#:key outputs #:allow-other-keys)
                   (let* ((lib (string-append #$output "/lib"))
                          (extdir (string-append lib "/guile/"
                                                 #$(version-major+minor
                                                    (package-version
                                                     (this-package-input "guile")))
                                                 "/extensions")))
                     (mkdir-p extdir)
                     (rename-file (string-append
                                   lib "/graphviz/guile/libgv_guile.so")
                                  (string-append extdir
                                                 "/libgv_guile.so"))))))))
    (inputs
     (list libxrender
           libx11
           gts
           gd
           guile-3.0                    ;Guile bindings
           pango
           fontconfig
           freetype
           libltdl
           libxaw
           expat
           libjpeg-turbo
           libpng))
    (native-inputs
     (list bison
           pkg-config
           swig))
    (outputs '("out" "doc"))            ;5 MiB of html + pdfs
    (home-page "https://www.graphviz.org/")
    (synopsis "Graph visualization software")
    (description
     "Graphviz is a graph visualization tool suite.  Graph visualization is a
way of representing structural information as diagrams of abstract graphs and
networks.  It has important applications in networking, bioinformatics,
software engineering, database and web design, machine learning, and in visual
interfaces for other technical domains.")
    (properties
     '((release-monitoring-url . "https://graphviz.org/download/source/")))
    (license license:epl1.0)))

(define-public graphviz-minimal
  (package/inherit graphviz
    (name "graphviz-minimal")
    (inputs (modify-inputs (package-inputs graphviz)
              (delete "libxrender" "libx11" "pango" "libxaw")))
    (synopsis "Graph visualization software (without X11 support)")))

(define-public python-graphviz
  (package
    (name "python-graphviz")
    (version "0.20.1")
    (source (origin
              (method url-fetch)
              (uri (pypi-uri "graphviz" version ".zip"))
              (sha256
               (base32
                "1y1b956r01kg7qarkkrivhn71q64k0gbq6bcybd4gfd3v95g2n4c"))))
    (build-system pyproject-build-system)
    (arguments
     (list
      #:phases
      '(modify-phases %standard-phases
         (add-before 'check 'prepare-chec
           ;; Needed for fontconfig cache directories
           (lambda _ (setenv "HOME" (getcwd)))))))
    (native-inputs
     (list unzip
           ;; For tests.
           graphviz
           python-mock
           python-pytest
           python-pytest-cov
           python-pytest-mock))
    (home-page "https://github.com/xflr6/graphviz")
    (synopsis "Simple Python interface for Graphviz")
    (description
     "This package provides a simple Python interface for the Graphviz graph
visualization tool suite.")
    (license license:expat)))

(define-public python-pygraphviz
  (package
    (name "python-pygraphviz")
    (version "1.10")
    (source
     (origin
       (method git-fetch)
       (uri (git-reference
             (url "https://github.com/pygraphviz/pygraphviz")
             (commit (string-append "pygraphviz-" version))))
       (file-name (string-append "pygraphviz-" version "-checkout"))
       (sha256
        (base32
         "1yrzjp5n86ynlj32p5dj1aj67md6bzkk8hac74j5y3mbl94m259g"))))
    (build-system python-build-system)
    (inputs
     (list graphviz))
    (native-inputs
     (list python-nose python-mock python-pytest
           python-doctest-ignore-unicode))
    (home-page "https://pygraphviz.github.io")
    (synopsis "Python interface to Graphviz")
    (description "PyGraphviz is a Python interface to the Graphviz graph
layout and visualization package.  With PyGraphviz you can create, edit, read,
write, and draw graphs using Python to access the Graphviz graph data
structure and layout algorithms.")
    (license license:bsd-3)))

(define-public python-uqbar
  (package
    (name "python-uqbar")
    (version "0.5.9")
    (source
     (origin
       (method git-fetch)
       (uri (git-reference
             (url "https://github.com/josiah-wolf-oberholtzer/uqbar")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
        (base32
         "0c573nzpm51qgz2g296f8pw8ys0i3r6daynxk06zagk5l5fgw9ar"))
       (patches (search-patches "python-uqbar-python3.10.patch"))))
    (build-system python-build-system)
    (arguments
     `(#:phases
       (modify-phases %standard-phases
         (replace 'check
           (lambda* (#:key tests? #:allow-other-keys)
             (when tests?
               (invoke "python" "-m" "pytest" "tests"))
             #t)))))
    (native-inputs
     (list graphviz
           python-flake8
           python-isort
           python-mypy
           python-pytest
           python-pytest-cov))
    (propagated-inputs
     (list python-black python-sphinx python-sphinx-rtd-theme
           python-unidecode))
    (home-page "https://github.com/josiah-wolf-oberholtzer/uqbar")
    (synopsis "Tools for building documentation with Sphinx, Graphviz and LaTeX")
    (description
     "This package contains tools for building documentation with Sphinx,
Graphviz and LaTeX.")
    (license license:expat)))

(define-public gts
  (package
    (name "gts")
    (version "0.7.6")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://sourceforge/gts/gts/" version
                                 "/gts-" version ".tar.gz"))
             (sha256
              (base32
               "07mqx09jxh8cv9753y2d2jsv7wp8vjmrd7zcfpbrddz3wc9kx705"))))
    (build-system gnu-build-system)
    (arguments
     '(#:phases
       (modify-phases %standard-phases
         (add-before 'check 'pre-check
           (lambda _
             (chmod "test/boolean/test.sh" #o777)
             #t)))

       ;; Some data files used by the test suite are missing.
       ;; See <http://sourceforge.net/p/gts/bugs/41/>.
       #:tests? #f))
    (native-inputs
     (list pkg-config))
    (propagated-inputs
     ;; The gts.pc file has glib-2.0 as required.
     (list glib))
    (home-page "https://gts.sourceforge.net/")

    ;; Note: Despite the name, this is not official GNU software.
    (synopsis "Triangulated Surface Library")
    (description
     "Library intended to provide a set of useful functions to deal with
3D surfaces meshed with interconnected triangles.")
    (license license:lgpl2.0+)))

(define-public xdot
  (package
    (name "xdot")
    (version "1.3")
    (source
     (origin
       ;; PyPI tarball is missing some test files.
       (method git-fetch)
       (uri (git-reference
             (url "https://github.com/jrfonseca/xdot.py/")
             (commit version)))
       (file-name (git-file-name name version))
       (sha256
        (base32 "00j147183yf6wp1rnlp26vvsnsz5v56qgffdpd2ijkpvphvyyiyi"))))
    (build-system python-build-system)
    (arguments
     (list
      #:phases #~(modify-phases %standard-phases
                   (add-before 'build 'start-xserver
                     (lambda* (#:key inputs native-inputs #:allow-other-keys)
                       (let ((Xvfb (search-input-file (or native-inputs inputs)
                                                      "/bin/Xvfb")))
                         (system (format #f "~a :1 -screen 0 640x480x24 &"
                                         Xvfb))
                         (setenv "DISPLAY" ":1"))))
                   (add-before 'check 'set-test-environment
                     (lambda* (#:key inputs #:allow-other-keys)
                       (let ((lib (search-input-file inputs
                                                     "lib/libvulkan.so.1")))
                         (setenv "XDG_RUNTIME_DIR"
                                 (getcwd))
                         (setenv "LIBGL_ALWAYS_SOFTWARE" "1")
                         (format (current-error-port) "~a~%"
                                 (assoc-ref inputs "gtk+"))
                         (setenv "LD_LIBRARY_PATH"
                                 (dirname lib)))))
                   ;; We wrap xdot, so that we don't propagate gtk+ and graphviz
                   (add-after 'install 'wrap
                     (lambda* (#:key inputs outputs #:allow-other-keys)
                       (let ((out (assoc-ref outputs "out"))
                             (graphviz (assoc-ref inputs "graphviz"))
                             (gi-typelib-path (getenv "GI_TYPELIB_PATH"))
                             (python-path (getenv "GUIX_PYTHONPATH")))
                         (wrap-program (string-append out "/bin/xdot")
                           `("PATH" ":" prefix
                             (,(string-append graphviz "/bin")))
                           `("GI_TYPELIB_PATH" ":" prefix
                             (,gi-typelib-path))
                           `("GUIX_PYTHONPATH" ":" prefix
                             (,python-path))))))
                   (replace 'check
                     (lambda* (#:key inputs outputs tests? #:allow-other-keys)
                       (when tests?
                         (add-installed-pythonpath inputs outputs)
                         (invoke "python" "test.py")))))))
    (native-inputs (list gobject-introspection xorg-server-for-tests))
    (inputs (list at-spi2-core
                  bash-minimal
                  (librsvg-for-system)
                  mesa
                  mesa-opencl
                  harfbuzz
                  graphviz
                  gtk+
                  python-numpy
                  python-pycairo
                  python-pygobject
                  vulkan-loader))
    (home-page "https://pypi.org/project/xdot/")
    (synopsis "Interactive viewer for graphviz dot files")
    (description
     "Xdot is an interactive viewer for graphs written in
@code{graphviz}’s dot language.  Internally, it uses the xdot output format as
an intermediate format, and @code{gtk} and @code{cairo} for rendering.  Xdot
can be used either as a standalone application, or as a Python library.")
    (license license:lgpl3+)))

(define-public python-pydot
  (package
    (name "python-pydot")
    (version "1.4.2")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "pydot" version))
       (sha256
        (base32
         "0z80zwldf7ffkwrpm28hixsiqp3053j7g281xd6phmnbkfiq3014"))))
    (build-system python-build-system)
    (arguments
     '(#:phases
       (modify-phases %standard-phases
         (replace 'check
           ;; Taken from .travis.yaml
           (lambda* (#:key tests? inputs outputs #:allow-other-keys)
             (when tests?
               (add-installed-pythonpath inputs outputs)
               (with-directory-excursion "test"
                 (invoke "python" "pydot_unittest.py"))))))))
    (native-inputs
     ;; For tests.
     (list graphviz python-chardet))
    (propagated-inputs
     ;; XXX: Two test failures with 3.0+:
     ;; https://github.com/pydot/pydot/issues/277
     (list python-pyparsing-2.4.7))
    (home-page "https://github.com/pydot/pydot")
    (synopsis "Python interface to Graphviz's DOT language")
    (description
     "Pydot provides an interface to create, handle, modify and process
graphs in Graphviz's DOT language, written in pure Python.")
    (license license:expat)))

(define-public dot2tex
  (package
    (name "dot2tex")
    (version "2.11.3")
    (source (origin
              (method url-fetch)
              (uri (pypi-uri "dot2tex" version))
              (sha256
               (base32
                "1kp77wiv7b5qib82i3y3sn9r49rym43aaqm5aw1bwnzfbbq2m6i9"))))
    (build-system python-build-system)
    (arguments
     (list
      #:phases
      #~(modify-phases %standard-phases
          (replace 'check
            (lambda* (#:key tests? #:allow-other-keys)
              (when tests?
                (invoke "pytest" "-vv" "tests"
                        ;; The test_semicolon test fails for unknown reason
                        ;; (see:
                        ;; https://github.com/kjellmf/dot2tex/issues/94).
                        "-k" "not test_semicolon")))))))
    (native-inputs
     (list python-pytest
           (texlive-updmap.cfg
            (list texlive-pgf
                  texlive-preview
                  texlive-pstricks
                  texlive-xcolor
                  texlive-xkeyval))))
    (inputs (list graphviz))
    (propagated-inputs (list python-pyparsing))
    (home-page "https://github.com/kjellmf/dot2tex")
    (synopsis "Graphviz to LaTeX converter")
    (description
     "The purpose of @code{dot2tex} is to give graphs generated by Graphviz a
more LaTeX friendly look and feel.  This is accomplished by converting
@code{xdot} output from Graphviz to a series of PSTricks or PGF/TikZ commands.
This approach allows:

@itemize @bullet
@item Typesetting labels with LaTeX, allowing mathematical notation
@item Using native PSTricks and PGF/TikZ commands for drawing arrows
@item Using backend specific styles to customize the output
@end itemize")
    (license license:expat)))

(define-public gprof2dot
  (package
    (name "gprof2dot")
    (version "2021.02.21")
    (source
     (origin
       (method git-fetch)
       (uri (git-reference
             (url "https://github.com/jrfonseca/gprof2dot")
             (commit version)))
       (file-name (git-file-name name version))
       (sha256
        (base32
         "1jjhsjf5fdi1fkn7mvhnzkh6cynl8gcjrygd3cya5mmda3akhzic"))))
    (build-system python-build-system)
    (arguments
     `(#:phases
       (modify-phases %standard-phases
         (replace 'check
           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
             (when tests?
               (add-installed-pythonpath inputs outputs)
               (invoke "python" "tests/test.py")))))))
    (native-inputs
     (list graphviz))
    (home-page "https://github.com/jrfonseca/gprof2dot")
    (synopsis "Generate a dot graph from the output of several profilers")
    (description "This package provides a Python script to convert the output
from many profilers into a dot graph.

It can:

@itemize

@item prune nodes and edges below a certain threshold;
@item use an heuristic to propagate time inside mutually recursive functions;
@item use color efficiently to draw attention to hot-spots;
@item work on any platform where Python and Graphviz is available.

@end itemize")
    (license license:lgpl3+)))