aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/graph.scm
blob: b5bdfe83fcbe80cd88f74ba7bf4c9b94f2de3485 (about) (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages graph)
  #:use-module (guix download)
  #:use-module (guix packages)
  #:use-module (guix build-system gnu)
  #:use-module (guix build-system python)
  #:use-module (guix build-system r)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (gnu packages)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages bioinformatics)
  #:use-module (gnu packages compression)
  #:use-module (gnu packages graphviz)
  #:use-module (gnu packages maths)
  #:use-module (gnu packages multiprecision)
  #:use-module (gnu packages pkg-config)
  #:use-module (gnu packages statistics)
  #:use-module (gnu packages xml))

(define-public igraph
  (package
    (name "igraph")
    (version "0.7.1")
    (source
     (origin
       (method url-fetch)
       (uri (string-append "http://igraph.org/nightly/get/c/igraph-"
                           version ".tar.gz"))
       (sha256
        (base32
         "1pxh8sdlirgvbvsw8v65h6prn7hlm45bfsl1yfcgd6rn4w706y6r"))))
    (build-system gnu-build-system)
    (arguments
     `(#:configure-flags
       (list "--with-external-glpk"
             "--with-external-blas"
             "--with-external-lapack")))
    (inputs
     `(("gmp" ,gmp)
       ("glpk" ,glpk)
       ("libxml2" ,libxml2)
       ("lapack" ,lapack)
       ("openblas" ,openblas)
       ("zlib" ,zlib)))
    (home-page "http://igraph.org")
    (synopsis "Network analysis and visualization")
    (description
     "This package provides a library for the analysis of networks and graphs.
It can handle large graphs very well and provides functions for generating
random and regular graphs, graph visualization, centrality methods and much
more.")
    (license license:gpl2+)))

(define-public python-igraph
  (package (inherit igraph)
    (name "python-igraph")
    (version "0.7.1.post6")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "python-igraph" version))
       (sha256
        (base32
         "0xp61zz710qlzhmzbfr65d5flvsi8zf2xy78s6rsszh719wl5sm5"))))
    (build-system python-build-system)
    (arguments '())
    (inputs
     `(("igraph" ,igraph)))
    (native-inputs
     `(("pkg-config" ,pkg-config)))
    (home-page "http://pypi.python.org/pypi/python-igraph")
    (synopsis "Python bindings for the igraph network analysis library")))

(define-public r-igraph
  (package
    (name "r-igraph")
    (version "1.1.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "igraph" version))
       (sha256
        (base32
         "1v26wyk52snh8z6m5p7yqwcd9dbqifhm57j112i9x53ppi0npcc9"))))
    (build-system r-build-system)
    (native-inputs
     `(("gfortran" ,gfortran)))
    (inputs
     `(("gmp" ,gmp)
       ("libxml2" ,libxml2)))
    (propagated-inputs
     `(("r-irlba" ,r-irlba)
       ("r-magrittr" ,r-magrittr)
       ("r-matrix" ,r-matrix)
       ("r-pkgconfig" ,r-pkgconfig)))
    (home-page "http://igraph.org")
    (synopsis "Network analysis and visualization")
    (description
     "This package provides routines for simple graphs and network analysis.
It can handle large graphs very well and provides functions for generating
random and regular graphs, graph visualization, centrality methods and much
more.")
    (license license:gpl2+)))

(define-public r-rgraphviz
  (package
    (name "r-rgraphviz")
    (version "2.22.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "Rgraphviz" version))
       (sha256
        (base32
         "1y9nyjffa9644jch0p2i3w302fmnyc2kb0c3z1f3d5zp1p4qmyqv"))))
    (properties `((upstream-name . "Rgraphviz")))
    (build-system r-build-system)
    ;; FIXME: Rgraphviz bundles the sources of an older variant of
    ;; graphviz.  It does not build with the latest version of graphviz, so
    ;; we do not add graphviz to the inputs.
    (inputs `(("zlib" ,zlib)))
    (propagated-inputs
     `(("r-graph" ,r-graph)))
    (native-inputs
     `(("pkg-config" ,pkg-config)))
    (home-page "http://bioconductor.org/packages/Rgraphviz")
    (synopsis "Plotting capabilities for R graph objects")
    (description
     "This package interfaces R with the graphviz library for plotting R graph
objects from the @code{graph} package.")
    (license license:epl1.0)))