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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015, 2016 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2017 David Craven <david@craven.ch>
;;; Copyright © 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Vagrant Cascadian <vagrant@debian.org>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages firmware)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (guix packages)
  #:use-module (guix download)
  #:use-module (guix utils)
  #:use-module (guix git-download)
  #:use-module (guix build-system gnu)
  #:use-module (gnu packages)
  #:use-module (gnu packages admin)
  #:use-module (gnu packages assembly)
  #:use-module (gnu packages bison)
  #:use-module (gnu packages cmake)
  #:use-module (gnu packages cross-base)
  #:use-module (gnu packages flex)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages linux)
  #:use-module (gnu packages perl)
  #:use-module (gnu packages python))

(define-public ath9k-htc-firmware
  (package
    (name "ath9k-htc-firmware")
    (version "1.4.0")
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url "https://github.com/qca/open-ath9k-htc-firmware.git")
                    (commit version)))
              (sha256
               (base32
                "16jbj8avg5jkgvq5lxm0hdxxn4c3zn7fx8b4nxllvr024apk9w23"))
              (file-name (git-file-name name version))
              (patches (search-patches "ath9k-htc-firmware-objcopy.patch"))))
    (build-system gnu-build-system)
    (arguments
     '(#:phases
       (modify-phases %standard-phases
         (add-before 'configure 'pre-configure
           (lambda* (#:key inputs #:allow-other-keys)
             (chdir "target_firmware")

             ;; 'configure' is a simple script that runs 'cmake' with
             ;; the right flags.
             (substitute* "configure"
               (("^TOOLCHAIN=.*$")
                (string-append "TOOLCHAIN="
                               (assoc-ref inputs "cross-gcc")
                               "\n")))
             #t))
         (replace 'install
           (lambda* (#:key outputs #:allow-other-keys)
             (let* ((out    (assoc-ref outputs "out"))
                    (fw-dir (string-append out "/lib/firmware")))
               (for-each (lambda (file)
                           (install-file file fw-dir))
                         (find-files "." "\\.fw$"))
              #t))))
       #:tests? #f))

    ;; The firmware is cross-compiled using a "bare bones" compiler (no libc.)
    ;; Use our own tool chain for that.
    (native-inputs `(("cross-gcc" ,(cross-gcc "xtensa-elf"))
                     ("cross-binutils" ,(cross-binutils "xtensa-elf"))
                     ("cmake" ,cmake-minimal)
                     ("perl" ,perl)))
    (home-page "http://wireless.kernel.org/en/users/Drivers/ath9k_htc")
    (synopsis "Firmware for the Atheros AR7010 and AR9271 USB 802.11n NICs")
    (description
     "This is the firmware for the Qualcomm Atheros AR7010 and AR9271 USB
802.11n NICs (aka Wi-Fi USB dongles).  It is used by the ath9k driver of
Linux-libre.")
    (license (license:non-copyleft "http://directory.fsf.org/wiki/License:ClearBSD"))))

(define-public b43-tools
  (let ((commit "27892ef741e7f1d08cb939744f8b8f5dac7b04ae")
        (revision "1"))
    (package
      (name "b43-tools")
      (version (git-version "0.0.0" revision commit))
      (source
       (origin
         (method git-fetch)
         (uri (git-reference
               (url "http://git.bues.ch/git/b43-tools.git")
               (commit commit)))
         (file-name (git-file-name name version))
         (sha256
          (base32
           "1wgmj4d65izbhprwb5bcwimc2ryv19b9066lqzy4sa5m6wncm9cn"))))
      (build-system gnu-build-system)
      (native-inputs
       `(("flex" ,flex)
         ("bison" ,bison)))
      (arguments
       `(#:modules ((srfi srfi-1)
                    (guix build gnu-build-system)
                    (guix build utils))
         #:tests? #f                    ; no tests
         #:phases
         (let ((subdirs '("assembler" "disassembler")))
           (modify-phases %standard-phases
             (delete 'configure)        ; no configure script
             (add-before 'build 'patch-/bin/true
               (lambda _
                 (substitute* (find-files "." "Makefile")
                   (("/bin/true") ":"))
                 #t))
             (replace 'build
               (lambda _
                 (for-each (lambda (dir)
                             (invoke "make" "-C" dir "CC=gcc"))
                           subdirs)
                 #t))
             (replace 'install
               (lambda* (#:key outputs #:allow-other-keys)
                 (let ((out (assoc-ref outputs "out")))
                   (mkdir-p (string-append out "/bin"))
                   (for-each (lambda (dir)
                               (invoke "make" "-C" dir
                                       (string-append "PREFIX=" out)
                                       "install"))
                             subdirs)
                   #t)))))))
      (home-page
       "https://bues.ch/cms/hacking/misc.html#linux_b43_driver_firmware_tools")
      (synopsis "Collection of tools for the b43 wireless driver")
      (description
       "The b43 firmware tools is a collection of firmware extractor,
assembler, disassembler, and debugging tools for the Linux kernel b43 wireless
driver.")
      (license license:gpl2))))

(define-public openfwwf-firmware
  (package
    (name "openfwwf-firmware")
    (version "5.2")
    (source
     (origin
       (method url-fetch)
       (uri (string-append "http://netweb.ing.unibs.it/~openfwwf/firmware/"
                           "openfwwf-" version ".tar.gz"))
       (sha256
        (base32
         "1p60gdi7w88s7qw82d3g9v7mk887mhvidf4l5q5hh09j10h37q4x"))))
    (build-system gnu-build-system)
    (native-inputs
     `(("b43-tools" ,b43-tools)))
    (arguments
     `(#:make-flags (list (string-append "PREFIX="
                                         (assoc-ref %outputs "out")
                                         "/lib/firmware/b43-open"))
       #:tests? #f                      ;no tests
       #:phases (modify-phases %standard-phases
                  (delete 'configure))))
    (home-page "http://netweb.ing.unibs.it/~openfwwf/")
    (synopsis "Firmware for BCM43xx devices")
    (description
     "This is firmware from Open FirmWare for WiFi networks (OpenFWWF) for the
Broadcom/AirForce chipset BCM43xx with Wireless-Core Revision 5.  It is used
by the b43-open driver of Linux-libre.")
    (license license:gpl2)))

(define* (make-opensbi-package platform variant #:optional (arch "riscv64"))
  (package
    (name (string-replace-substring
           (string-append "opensbi-" platform "-" variant)
           "_" "-"))
    (version "0.6")
    (source
     (origin
       (method git-fetch)
       (uri (git-reference
             (url "https://github.com/riscv/opensbi.git")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
        (base32 "129ypdga0fzn657n2f42g2a1vx3hf8x7sd78h06d35pgkry0jkl7"))))
    (build-system gnu-build-system)
    (native-inputs
     `(,@(if (and (not (string-prefix? "riscv64" (%current-system)))
                  (string-prefix? "riscv64" arch))
           `(("cross-gcc" ,(cross-gcc "riscv64-linux-gnu" #:xgcc gcc-7))
             ("cross-binutils" ,(cross-binutils "riscv64-linux-gnu")))
           '())))
    (arguments
     `(#:tests? #f ; no check target
       #:make-flags (list (string-append "PLATFORM=" ,platform "/" ,variant)
                          ,@(if (and (not (string-prefix? "riscv64"
                                                          (%current-system)))
                                     (string-prefix? "riscv64" arch))
                                `("CROSS_COMPILE=riscv64-linux-gnu-")
                                '())
                          "FW_PAYLOAD=n"
                          "V=1")
       #:phases
       (modify-phases %standard-phases
         (delete 'configure)
         (replace 'install
           (lambda* (#:key outputs #:allow-other-keys)
             (let ((out (assoc-ref outputs "out"))
                   (bin (find-files "." ".*fw_.*.elf$")))
               (for-each
                 (lambda (file)
                   (install-file file out))
                 bin))
             #t)))))
    (home-page "https://github.com/riscv/opensbi")
    (synopsis "RISC-V Open Source Supervisor Binary Interface")
    (description "A reference implementation of the RISC-V SBI specifications
for platform-specific firmwares executing in M-mode.")
    (license (list license:bsd-2
                   ;; lib/utils/libfdt/* is dual licensed under bsd-2 and gpl2+.
                   license:gpl2+
                   ;; platform/ariane-fpga/* is gpl2.
                   license:gpl2))))

(define-public opensbi-qemu-virt
  (make-opensbi-package "qemu" "virt"))

(define-public opensbi-sifive-fu540
  (make-opensbi-package "sifive" "fu540"))

(define-public opensbi-qemu-sifive-u
  ;; Dropped upstream, as all functionality is present in the sifive-fu540
  ;; target for recent versions of qemu, u-boot and linux.
  (deprecated-package "opensbi-qemu-sifive-u" opensbi-sifive-fu540))

(define-public seabios
  (package
    (name "seabios")
    (version "1.13.0")
    (source
     (origin
       (method git-fetch)
       (uri (git-reference
             (url "https://review.coreboot.org/seabios.git")
             (commit (string-append "rel-" version))))
       (file-name (git-file-name name version))
       (sha256
        (base32 "1n1bd6msfs7xn8844sz2qnm7hb5x2qfl3zb06kp4bx9vdc3i6619"))))
    (build-system gnu-build-system)
    (native-inputs
     `(("python" ,python-wrapper)))
    (arguments
     `(#:tests? #f                      ; no check target
       #:phases
       (modify-phases %standard-phases
         (replace 'configure
           (lambda _
             (setenv "CC" "gcc")
             #t))
         (replace 'install
           (lambda* (#:key outputs #:allow-other-keys)
             (let* ((out (assoc-ref outputs "out"))
                    (fmw (string-append out "/share/firmware")))
               (mkdir-p fmw)
               (copy-file "out/bios.bin" (string-append fmw "/bios.bin"))
               #t))))))
    (home-page "https://www.seabios.org/SeaBIOS")
    (synopsis "x86 BIOS implementation")
    (description "SeaBIOS is an implementation of a 16bit x86 BIOS.  SeaBIOS
can run in an emulator or it can run natively on X86 hardware with the use of
coreboot.")
    ;; Dual licensed.
    (license (list license:gpl3+ license:lgpl3+
                   ;; src/fw/acpi-dsdt.dsl is lgpl2
                   license:lgpl2.1
                   ;; src/fw/lzmadecode.c and src/fw/lzmadecode.h are lgpl3+ and
                   ;; cpl with a linking exception.
                   license:cpl1.0))))

;; OVMF is part of the edk2 source tree.
(define edk2-commit "13a50a6fe1dcfa6600c38456ee24e0f9ecf51b5f")
(define edk2-version (git-version "20170116" "1" edk2-commit))
(define edk2-origin
  (origin
    (method git-fetch)
    (uri (git-reference
          (url "https://github.com/tianocore/edk2")
          (commit edk2-commit)))
    (file-name (git-file-name "edk2" edk2-version))
    (sha256
     (base32
      "1gy2332kdqk8bjzpcsripx10896rbvgl0ic7r344kmpiwdgm948b"))))

(define-public ovmf
  (package
    (name "ovmf")
    (version edk2-version)
    (source edk2-origin)
    (build-system gnu-build-system)
    (native-inputs
     `(("acpica" ,acpica)
       ("gcc" ,gcc-5)
       ("nasm" ,nasm)
       ("python-2" ,python-2)
       ("util-linux" ,util-linux)))
    (arguments
     `(#:tests? #f ; No check target.
       #:phases
       (modify-phases %standard-phases
         (replace 'configure
           (lambda _
             (let* ((cwd (getcwd))
                    (tools (string-append cwd "/BaseTools"))
                    (bin (string-append tools "/BinWrappers/PosixLike")))
               (setenv "WORKSPACE" cwd)
               (setenv "EDK_TOOLS_PATH" tools)
               (setenv "PATH" (string-append (getenv "PATH") ":" bin))
               ; FIXME: The below script errors out. When using 'invoke' instead
               ; of 'system*' this causes the build to fail.
               (system* "bash" "edksetup.sh")
               (substitute* "Conf/target.txt"
                 (("^TARGET[ ]*=.*$") "TARGET = RELEASE\n")
                 (("^MAX_CONCURRENT_THREAD_NUMBER[ ]*=.*$")
                  (format #f "MAX_CONCURRENT_THREAD_NUMBER = ~a~%"
                          (number->string (parallel-job-count)))))
               ;; Build build support.
               (setenv "BUILD_CC" "gcc")
               (invoke "make" "-C" tools)
               #t)))
         (replace 'build
           (lambda _
             (invoke "build" "-a" "IA32" "-t" "GCC49"
                     "-p" "OvmfPkg/OvmfPkgIa32.dsc")))
         ,@(if (string=? "x86_64-linux" (%current-system))
             '((add-after 'build 'build-x64
                (lambda _
                  (invoke "build" "-a" "X64" "-t" "GCC49"
                          "-p" "OvmfPkg/OvmfPkgX64.dsc"))))
             '())
         (replace 'install
           (lambda* (#:key outputs #:allow-other-keys)
             (let* ((out (assoc-ref outputs "out"))
                    (fmw (string-append out "/share/firmware")))
               (mkdir-p fmw)
               (copy-file "Build/OvmfIa32/RELEASE_GCC49/FV/OVMF.fd"
                          (string-append fmw "/ovmf_ia32.bin"))
               ,@(if (string=? "x86_64-linux" (%current-system))
                   '((copy-file "Build/OvmfX64/RELEASE_GCC49/FV/OVMF.fd"
                                (string-append fmw "/ovmf_x64.bin")))
                   '()))
             #t)))))
    (supported-systems '("x86_64-linux" "i686-linux"))
    (home-page "https://www.tianocore.org")
    (synopsis "UEFI firmware for QEMU")
    (description "OVMF is an EDK II based project to enable UEFI support for
Virtual Machines.  OVMF contains a sample UEFI firmware for QEMU and KVM.")
    (license (list license:expat
                   license:bsd-2 license:bsd-3 license:bsd-4))))

(define-public ovmf-aarch64
  (package
    (inherit ovmf)
    (name "ovmf-aarch64")
    (native-inputs
     `(,@(package-native-inputs ovmf)
       ,@(if (not (string-prefix? "aarch64" (%current-system)))
           `(("cross-gcc" ,(cross-gcc "aarch64-linux-gnu"))
             ("cross-binutils" ,(cross-binutils "aarch64-linux-gnu")))
           '())))
    (arguments
     (substitute-keyword-arguments (package-arguments ovmf)
       ((#:phases phases)
        `(modify-phases ,phases
           (add-before 'configure 'set-env
             (lambda _
               ,@(if (not (string-prefix? "aarch64" (%current-system)))
                     `((setenv "GCC49_AARCH64_PREFIX" "aarch64-linux-gnu-"))
                     '())
               #t))
           (replace 'build
             (lambda _
               (invoke "build" "-a" "AARCH64" "-t" "GCC49"
                       "-p" "ArmVirtPkg/ArmVirtQemu.dsc")))
           (delete 'build-x64)
           (replace 'install
             (lambda* (#:key outputs #:allow-other-keys)
               (let* ((out (assoc-ref outputs "out"))
                      (fmw (string-append out "/share/firmware")))
                 (mkdir-p fmw)
                 (copy-file "Build/ArmVirtQemu-AARCH64/RELEASE_GCC49/FV/QEMU_EFI.fd"
                            (string-append fmw "/ovmf_aarch64.bin"))
                 #t)))))))
    (supported-systems %supported-systems)))

(define-public ovmf-arm
  (package
    (inherit ovmf)
    (name "ovmf-arm")
    (native-inputs
     `(,@(package-native-inputs ovmf)
       ,@(if (not (string-prefix? "armhf" (%current-system)))
           `(("cross-gcc" ,(cross-gcc "arm-linux-gnueabihf"))
             ("cross-binutils" ,(cross-binutils "arm-linux-gnueabihf")))
           '())))
    (arguments
     (substitute-keyword-arguments (package-arguments ovmf)
       ((#:phases phases)
        `(modify-phases ,phases
           (add-before 'configure 'set-env
             (lambda _
               ,@(if (not (string-prefix? "armhf" (%current-system)))
                     `((setenv "GCC49_ARM_PREFIX" "arm-linux-gnueabihf-"))
                     '())
               #t))
           (replace 'build
             (lambda _
               (invoke "build" "-a" "ARM" "-t" "GCC49"
                       "-p" "ArmVirtPkg/ArmVirtQemu.dsc")))
           (delete 'build-x64)
           (replace 'install
             (lambda* (#:key outputs #:allow-other-keys)
               (let* ((out (assoc-ref outputs "out"))
                      (fmw (string-append out "/share/firmware")))
                 (mkdir-p fmw)
                 (copy-file "Build/ArmVirtQemu-ARM/RELEASE_GCC49/FV/QEMU_EFI.fd"
                            (string-append fmw "/ovmf_arm.bin"))
                 #t)))))))
    (supported-systems %supported-systems)))

(define* (make-arm-trusted-firmware platform #:optional (arch "aarch64"))
  (package
    (name (string-append "arm-trusted-firmware-" platform))
    (version "2.2")
    (source
      (origin
        (method git-fetch)
        (uri (git-reference
               ;; There are only GitHub generated release snapshots.
               (url "https://git.trustedfirmware.org/TF-A/trusted-firmware-a.git/")
               (commit (string-append "v" version))))
        (file-name (git-file-name "arm-trusted-firmware" version))
        (patches (search-patches
                  "arm-trusted-firmware-disable-hdcp.patch"))
       (sha256
        (base32
         "03fjl5hy1bqlya6fg553bqz7jrvilzrzpbs87cv6jd04v8qrvry8"))))
    (build-system gnu-build-system)
    (arguments
     `(#:phases
       (modify-phases %standard-phases
         (delete 'configure) ; no configure script
         ;; Remove binary blobs which do not contain source or proper license.
         (add-after 'unpack 'remove-binary-blobs
           (lambda _
             (for-each (lambda (file)
                         (delete-file file))
                       (find-files "." ".*\\.bin$"))))
         (replace 'install
           (lambda* (#:key outputs #:allow-other-keys)
             (let ((out (assoc-ref outputs "out"))
                   (bin (find-files "." ".*\\.(bin|elf)$")))
               (for-each
                 (lambda (file)
                   (install-file file out))
                 bin))
             #t)))
       #:make-flags (list (string-append "PLAT=" ,platform)
                          ,@(if (and (not (string-prefix? "aarch64"
                                                          (%current-system)))
                                     (string-prefix? "aarch64" arch))
                              `("CROSS_COMPILE=aarch64-linux-gnu-")
                              '())
                          ,@(if (and (not (string-prefix? "armhf"
                                                          (%current-system)))
                                     (string-prefix? "armhf" arch))
                              `("CROSS_COMPILE=arm-linux-gnueabihf-")
                              '())
                          "DEBUG=1")
       #:tests? #f)) ; no tests
    (native-inputs
     `(,@(if (and (not (string-prefix? "aarch64" (%current-system)))
                  (string-prefix? "aarch64" arch))
           ;; gcc-7 since it is used for u-boot, which needs gcc-7.
           `(("cross-gcc" ,(cross-gcc "aarch64-linux-gnu" #:xgcc gcc-7))
             ("cross-binutils" ,(cross-binutils "aarch64-linux-gnu")))
           '())
       ,@(if (and (not (string-prefix? "armhf" (%current-system)))
                  (string-prefix? "armhf" arch))
           ;; gcc-7 since it is used for u-boot, which needs gcc-7.
           `(("cross-gcc" ,(cross-gcc "arm-linux-gnueabihf" #:xgcc gcc-7))
             ("cross-binutils" ,(cross-binutils "arm-linux-gnueabihf")))
           '())
        ))
    (home-page "https://www.trustedfirmware.org/")
    (synopsis "Implementation of \"secure world software\"")
    (description
     "ARM Trusted Firmware provides a reference implementation of secure world
software for ARMv7A and ARMv8-A, including a Secure Monitor executing at
@dfn{Exception Level 3} (EL3).  It implements various ARM interface standards,
such as:
@enumerate
@item The Power State Coordination Interface (PSCI)
@item Trusted Board Boot Requirements (TBBR, ARM DEN0006C-1)
@item SMC Calling Convention
@item System Control and Management Interface
@item Software Delegated Exception Interface (SDEI)
@end enumerate\n")
    (license (list license:bsd-3
                   license:bsd-2)))) ; libfdt

(define-public arm-trusted-firmware-sun50i-a64
  (let ((base (make-arm-trusted-firmware "sun50i_a64")))
    (package
      (inherit base)
      (name "arm-trusted-firmware-sun50i-a64"))))

(define-public arm-trusted-firmware-rk3328
  (make-arm-trusted-firmware "rk3328"))

(define-public arm-trusted-firmware-puma-rk3399
  (let ((base (make-arm-trusted-firmware "rk3399"))
        ;; Vendor's arm trusted firmware branch hasn't been upstreamed yet.
        (commit "d71e6d83612df896774ec4c03d49500312d2c324")
        (revision "1"))
    (package
      (inherit base)
      (name "arm-trusted-firmware-puma-rk3399")
      (version (git-version "1.3" revision commit))
      (source
        (origin
          (method git-fetch)
          (uri (git-reference
                 (url "https://git.theobroma-systems.com/arm-trusted-firmware.git")
                 (commit commit)))
          (file-name (git-file-name name version))
          (sha256
           (base32
            "0vqhwqqh8h9qlkpybg2v94911091c1418bc4pnzq5fd7zf0fjkf8")))))))

(define-public arm-trusted-firmware-rk3399
  (let ((base (make-arm-trusted-firmware "rk3399")))
    (package
      (inherit base)
      (name "arm-trusted-firmware-rk3399")
      (native-inputs
       `(("cross32-gcc" ,(cross-gcc "arm-none-eabi"))
         ("cross32-binutils", (cross-binutils "arm-none-eabi"))
         ,@(package-native-inputs base))))))

(define-public rk3399-cortex-m0
  (package
    (name "rk3399-cortex-m0")
    (version "1")
    (source
     (origin
       (method git-fetch)
       (uri (git-reference
             (url "https://git.theobroma-systems.com/rk3399-cortex-m0.git")
             (commit (string-append "v" version))))
       (file-name (git-file-name "rk3399-cortex-m0" version))
       (sha256
        (base32
         "02wz1vkf4j3zc8rx289z76xhrf71jhb2p05lvmygky393a9gjh9w"))))
    (home-page "https://git.theobroma-systems.com/rk3399-cortex-m0.git/about/")
    (synopsis "PMU Cortex M0 firmware for RK3399 Q7 (Puma)")
    (description
     "Cortex-M0 firmware used with the RK3399 to implement
power-management functionality and helpers (e.g. DRAM frequency
switching support).\n")
    (license license:bsd-3)
    (build-system gnu-build-system)
    (arguments
     `(#:phases
       (modify-phases %standard-phases
         (delete 'configure)
         (delete 'check)
         (replace 'install
           (lambda* (#:key outputs #:allow-other-keys)
             (let ((out (assoc-ref outputs "out"))
                   (mzerofiles (find-files "." "rk3399m0.(elf|bin)$")))
               (for-each
                 (lambda (file)
                   (install-file file out))
                 mzerofiles))
             #t))
         (add-before 'build 'setenv
           (lambda* (#:key inputs #:allow-other-keys)
             (setenv "CROSS_COMPILE" "arm-none-eabi-")
             #t)))))
    (native-inputs `(("cross-gcc" ,(cross-gcc "arm-none-eabi" #:xgcc gcc-7))
                     ("cross-binutils" ,(cross-binutils "arm-none-eabi"))))))
tting scalable geometric forms. In addition to this widget, a general purpose \"reference\" FITS viewer is provided, based on a plugin framework. A fairly complete set of standard plugins are provided for features that we expect from a modern FITS viewer: panning and zooming windows, star catalog access, cuts, star pick/FWHM, thumbnails, etc.") (license license:bsd-3))) (define-public ginga-qt5 (package/inherit python-ginga (name "ginga-qt5") (inputs (modify-inputs (package-inputs python-ginga) (prepend python-pyqt))) (synopsis "Qt5 image viewer build based on python-ginga library"))) (define-public python-glue-astronomy (package (name "python-glue-astronomy") (version "0.10.0") (source (origin (method url-fetch) (uri (pypi-uri "glue-astronomy" version)) (sha256 (base32 "1bra11i55g687ykzll5clp7mf3l9kc0x11wqc3gwfi98qx8fgpqz")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "--pyargs" "glue_astronomy" ;; XXX: Findout why these tests fail to load: ;; E ModuleNotFoundError: No module named 'glue.qglue' ;; E ImportError: cannot import name 'make_2dspec_image' from ;; 'specreduce.utils.synth_data' "--ignore=glue_astronomy/io/spectral_cube/tests/test_spectral_cube.py" "--ignore=glue_astronomy/io/spectral_cube/tests/test_spectral_cube.py" "--ignore=glue_astronomy/translators/tests/test_trace.py" "--ignore=glue_astronomy/translators/tests/test_trace.py"))) (propagated-inputs (list python-astropy python-glue-core python-regions python-specreduce python-spectral-cube python-specutils)) (native-inputs (list python-mock python-pytest-astropy python-setuptools-scm)) (home-page "https://github.com/glue-viz/glue-astronomy") (synopsis "Astronomy-specific plugins for glue") (description "The glue-astronomy plugin for glue provides a collection of astronomy-specific functionality") (license license:bsd-3))) (define-public python-glue-core (package (name "python-glue-core") (version "1.21.1") (source (origin (method url-fetch) (uri (pypi-uri "glue_core" version)) (sha256 (base32 "1xms896ds70sbym1cr5lrbjl4i8vixy3mcc6qsg1b3ppvky76vmn")))) (build-system pyproject-build-system) (propagated-inputs (list ;; python-astrodendro ; optional, not packed python-astropy python-dill python-echo python-fast-histogram python-h5py python-ipython python-matplotlib python-mpl-scatter-density python-numpy python-openpyxl python-pandas ;; python-pyavm ; optional, not packed python-pillow python-scikit-image python-scipy python-setuptools python-shapely python-spectral-cube python-xlrd)) (native-inputs (list python-h5py python-objgraph python-pytest python-pytest-cov python-pytest-mpl python-setuptools python-setuptools-scm)) (home-page "http://glueviz.org") (synopsis "Multidimensional data visualization project") (description "Glue is a python project to link visualizations of scientific datasets across many files.") (license license:bsd-3))) (define-public python-glue-qt (package (name "python-glue-qt") (version "0.3.1") (source (origin (method url-fetch) (uri (pypi-uri "glue-qt" version)) (sha256 (base32 "15ycykhg02xmsrlyv90qxckssmrq355qaqmz7p8nnqygm0gyrnx1")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-before 'check 'prepare-x (lambda _ (system "Xvfb &") (setenv "DISPLAY" ":0") (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-astropy python-echo python-glue-core python-ipykernel python-ipython python-matplotlib python-numpy python-pvextractor python-qtconsole python-qtpy python-scipy)) (native-inputs (list python-objgraph python-pytest python-setuptools-scm xorg-server-for-tests)) (home-page "http://glueviz.org") (synopsis "Multidimensional data visualization across files") (description "Multidimensional data visualization across files.") (license license:bsd-3))) (define-public python-pvextractor (package (name "python-pvextractor") (version "0.4") (source (origin (method url-fetch) (uri (pypi-uri "pvextractor" version)) (sha256 (base32 "1kl33vg5rxmdwlk36pn8zqa7k7f43fb7w417fym6ygp86mci2spd")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "--pyargs" "pvextractor") #:phases #~(modify-phases %standard-phases ;; See <https://github.com/radio-astro-tools/pvextractor/issues/124>. (add-after 'unpack 'patch-regexp (lambda _ (substitute* "pvextractor/pvregions.py" (("coordre = re.compile.*") "coordre = re.compile(\"^[a-z]*\\\\((.*)\\\\)\")\n")))) (add-before 'check 'prepare-x (lambda _ (system "Xvfb &") (setenv "DISPLAY" ":0") (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-astropy python-matplotlib python-numpy python-pyqt-6 python-qtpy python-scipy python-spectral-cube)) (native-inputs (list python-pytest-astropy python-setuptools-scm xorg-server-for-tests)) (home-page "http://pvextractor.readthedocs.io") (synopsis "Position-Velocity diagram extractor") (description "The concept of the pvextractor package is simple - given a path defined in sky coordinates, and a spectral cube, extract a slice of the cube along that path, and along the spectral axis, producing a position-velocity or position-frequency slice.") (license license:bsd-3))) (define-public python-pyxsim (package (name "python-pyxsim") (version "4.4.1") (source (origin (method url-fetch) (uri (pypi-uri "pyxsim" version)) (sha256 (base32 "1vviy9hk2z3h0fi6c8207ps5pklsjn0a77pqq6wa4sa1n07clc8i")))) (build-system pyproject-build-system) (arguments (list ;; XXX: Tests require additional data, check if it may be packed ;; separately, see tests/ci_install.sh. #:tests? #f #:phases #~(modify-phases %standard-phases (add-before 'check 'set-home (lambda _ ;; To address sanity check warning: UserWarning: unable to write ;; new config file. (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-astropy python-h5py python-numpy python-scipy python-soxs python-tqdm python-unyt python-yt)) (native-inputs (list python-cython-3 python-setuptools-scm)) (home-page "https://hea-www.cfa.harvard.edu/~jzuhone/pyxsim/") (synopsis "Simulating X-ray observations from astrophysical sources") (description "This package implements functionality for simulating X-ray emission from astrophysical sources. X-rays probe the high-energy universe, from hot galaxy clusters to compact objects such as neutron stars and black holes and many interesting sources in between. pyXSIM makes it possible to generate synthetic X-ray observations of these sources from a wide variety of models, whether from grid-based simulation codes such as FLASH, Enzo, and Athena, to particle-based codes such as Gadget and AREPO, and even from datasets that have been created 'by hand', such as from NumPy arrays. pyXSIM also provides facilities for manipulating the synthetic observations it produces in various ways, as well as ways to export the simulated X-ray events to other software packages to simulate the end products of specific X-ray observatories.") (license license:bsd-3))) (define-public python-sncosmo (package (name "python-sncosmo") (version "2.11.1") (source (origin (method url-fetch) (uri (pypi-uri "sncosmo" version)) (sha256 (base32 "0nmhrvaw22zxpmykl70a91mc88pxmw0x5fdxjiz3hdzkdbqrg0x9")))) (build-system pyproject-build-system) (arguments (list #:test-flags ;; Disable tests requireing remote access to download test data. #~(list "-k" (string-append "not test_megacampsf_bandpass" " and not test_builtins_remote_aa" " and not test_builtins_remote_nm" " and not test_builtins_remote_um" " and not test_builtins_remote_wfc3" " and not test_builtins_megacampsf" " and not test_builtins_timeseries_ascii" " and not test_builtins_timeseries_fits" " and not test_builtins_salt2model" " and not test_builtins_salt3model" " and not test_builtins_2011fe" " and not test_builtins_mlcs2k2" " and not test_builtins_snemo" " and not test_builtins_sugar" " and not test_builtins_magsys_fits" " and not test_builtins_magsys_csp" " and not test_builtins_magsys_ab_b12" " and not test_builtins_magsys_jla" " and not test_csp_magsystem" " and not test_compositemagsystem_band_error" " and not test_G10" " and not test_C11" " and not test_salt2source_timeseries_vs_snfit" " and not test_salt2source_rcov_vs_snfit" " and not test_bandflux" " and not test_bandflux_multi" " and not test_bandflux_zpsys" " and not test_bandfluxcov" " and not test_bandmag" " and not test_sugarsource")) #:phases #~(modify-phases %standard-phases (add-after 'unpack 'relax-requirements (lambda _ (substitute* "setup.cfg" ;; pyyaml>=6.0.1 (("6.0.1") "6.0")))) (add-before 'check 'prepare-test-environment (lambda _ (setenv "HOME" "/tmp") (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-astropy python-extinction python-looseversion python-numpy python-pyyaml python-scipy)) (native-inputs (list ;; python-iminuit ; not packed, optional python-cython python-pytest python-pytest-astropy python-pytest-cov)) (home-page "https://sncosmo.readthedocs.org") (synopsis "Package for supernova cosmology based on astropy") (description "SNCosmo is a Python library for supernova cosmology analysis. It aims to make such analysis both as flexible and clear as possible.") (license license:bsd-3))) (define-public python-soxs (package (name "python-soxs") (version "4.8.5") (source (origin (method url-fetch) (uri (pypi-uri "soxs" version)) (sha256 (base32 "1m5q3i7hk7jqdpd46h13c4a16b74p0k4mqkxhs43b4vi95h70qrj")))) (build-system pyproject-build-system) (arguments (list ;; XXX: Tests require additional data, check if it may be packed ;; separately, see tests/ci_install.sh. #:tests? #f #:phases #~(modify-phases %standard-phases (add-before 'check 'set-home (lambda _ ;; To address sanity check warning: UserWarning: unable to write ;; new config file. (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-appdirs python-astropy python-h5py python-numpy python-pooch python-pyyaml python-regions python-scipy python-tqdm)) (native-inputs (list python-cython python-setuptools-scm)) (home-page "https://hea-www.cfa.harvard.edu/soxs/") (synopsis "Simulated Observations of X-ray Sources") (description "SOXS is a software suite which can create simulated X-ray observations of astrophysical sources with almost any existing or planned X-ray observatory. The goal of SOXS is to provide a comprehensive set of tools to design source models and convolve them with simulated models of X-ray instruments. This package was originally developed to support the @url{https://www.lynxobservatory.org/,Lynx X-ray Observatory} mission concept, but has evolved to support other missions as well.") ;; SOXS is licensed under the terms of the Modified BSD License (also ;; known as New or Revised BSD). (license license:bsd-3))) (define-public python-specreduce (package (name "python-specreduce") (version "1.4.1") (source (origin (method url-fetch) (uri (pypi-uri "specreduce" version)) (sha256 (base32 "14ba4ws2z3kpw007f3hpslgp5i6dx082xhql4aim7j82211gpj6s")))) (build-system pyproject-build-system) (arguments (list #:test-flags ;; TODO: Try to link some test data availale in ;; specification-specreduce-data package. #~(list "-k" (string-append "not specreduce.calibration_data.get_pypeit_data_path" " and not specreduce.calibration_data.get_reference_file_path")) #:phases #~(modify-phases %standard-phases (add-after 'unpack 'patch-pypojrect-toml (lambda _ (substitute* "pyproject.toml" ;; TypeError: Configuration.__init__() got an unexpected ;; keyword argument 'version_file' (("version_file = .*") "")))) (add-before 'check 'set-home (lambda _ ;; Relax matplotlib warning: ... because the default path ;; (/homeless-shelter/.config/matplotlib) is not a writable ;; directory ... (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-astropy python-gwcs python-matplotlib python-photutils python-specutils python-synphot)) (native-inputs (list python-photutils python-setuptools-scm python-pytest-astropy)) (home-page "https://specreduce.readthedocs.io/") (synopsis "Spectroscopic Reductions") (description "This package implements functionality of spectroscopic reduction in observations from Optical and @acronym{Near-infrared spectroscopy,NIR} instruments.") (license (list license:bsd-3 ; licenses/LICENSE.rst, same as python-astropy license:expat)))) ; licenses/KOSMOS_LICENSE (define-public python-sunkit-image (package (name "python-sunkit-image") (version "0.5.1") (source (origin (method url-fetch) (uri (pypi-uri "sunkit_image" version)) (sha256 (base32 "1wzii7dy0yb2lx0k8m3iak5vxc0wbybj5cdkvrk93sr14k9crqds")))) (build-system pyproject-build-system) (arguments (list ;; XXX: Check with upstram: assert False. #:test-flags #~(list "-k" (string-append "not test_fnrgf" " and not test_calculate_solar_rotate_shift" " and not test_mapsequence_solar_derotate")) #:phases #~(modify-phases %standard-phases (add-before 'check 'set-home (lambda _ ;; For tests: Permission denied: '/homeless-shelter' (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-astropy python-matplotlib python-numpy python-scikit-image python-scipy python-sunpy)) (native-inputs (list python-astroscrappy python-beautifulsoup4 python-dask python-drms python-importlib-resources python-pytest-astropy python-pytest-mpl python-setuptools-scm python-zeep)) (home-page "https://github.com/sunpy/sunkit-image/") (synopsis "Solar Physics image processing toolbox") (description "This package provides an image processing toolbox for Solar Physics.") (license license:bsd-2))) (define-public wcslib (package (name "wcslib") (version "8.2.2") (source (origin (method url-fetch) (uri (string-append "https://www.atnf.csiro.au/people/mcalabre/WCS/" "wcslib-" version ".tar.bz2")) (sha256 (base32 "0cvqppjf7gk0f3rs9cc46h5fffv2l8ylrb234r9fbx0px0525632")) (snippet #~(begin (use-modules (guix build utils)) (delete-file-recursively "C/flexed"))))) (build-system gnu-build-system) (arguments (list #:configure-flags #~(list (string-append "--with-cfitsiolib=" #$(this-package-input "cfitsio") "/lib") (string-append "--with-cfitsioinc=" #$(this-package-input "cfitsio") "/include")) #:phases #~(modify-phases %standard-phases (delete 'install-license-files) ; installed by ‘make install’ (add-before 'configure 'patch-/bin/sh (lambda _ (substitute* "makedefs.in" (("/bin/sh") "sh"))))))) ;; TODO: Fix build with gfortran and pack missing optional pgplot. ;; (inputs (list gfortran pgplot)) (inputs (list cfitsio)) (native-inputs (list flex)) (home-page "https://www.atnf.csiro.au/people/mcalabre/WCS") (synopsis "Library which implements the FITS WCS standard") (description "The FITS \"World Coordinate System\" (@dfn{WCS}) standard defines keywords and usage that provide for the description of astronomical coordinate systems in a @dfn{FITS} (Flexible Image Transport System) image header.") (license license:lgpl3+))) ;;; The version is required for julia-wcs-jll and julia-wcs. They do not ;;; support version higher than 7.x. (define-public wcslib-7.12 (package (inherit wcslib) (version "7.12") (source (origin (method url-fetch) (uri (string-append "https://www.atnf.csiro.au/people/mcalabre/WCS/" "wcslib-" version ".tar.bz2")) (sha256 (base32 "1m3bx6gh5w3c7vvsqcki0x20mg8lilg13m0i8nh7za89w58dxy4w")) (snippet #~(begin (use-modules (guix build utils)) (delete-file-recursively "C/flexed"))))) (properties '((hidden? . #t))))) (define-public glnemo2 (package (name "glnemo2") (version "1.21.0") (source (origin (method git-fetch) (uri (git-reference (url "https://gitlab.lam.fr/jclamber/glnemo2") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 "1jmmxszh8d2jmfghig36nhykff345mqnpssfa64d0r7l9cnfp3cn")))) (build-system cmake-build-system) (arguments (list #:tests? #f ; No test target #:configure-flags #~(list "CPPFLAGS=-fcommon") #:phases #~(modify-phases %standard-phases (add-after 'unpack 'patch-libraries-paths (lambda _ (substitute* "CMakeLists.txt" ;; There is some not straightforward logic on how to set ;; the installation prefix for the project; inherit it ;; from the build-system default flags. (("CMAKE_INSTALL_PREFIX \"/usr\"") "CMAKE_INSTALL_PREFIX") (("/usr/include/CCfits") (string-append #$(this-package-input "ccfits") "/include/CCfits")) (("/usr/include/tirpc") (string-append #$(this-package-input "libtirpc") "/include/tirpc")) ;; It tries to detect library in two "predictable" paths, ;; required during the link phase. (("/usr/lib64/libtirpc.so") (string-append #$(this-package-input "libtirpc") "/lib/libtirpc.so")))))))) (inputs (list ccfits cfitsio glm glu hdf5 libtirpc qtbase-5 zlib)) (home-page "https://projets.lam.fr/projects/glnemo2/wiki/Wiki") (synopsis "3D interactive visualization program for n-body like particles") (description "GLNEMO2 is an interactive 3D visualization program which displays particles positions of the different components (gas, stars, disk, dark matter halo, bulge) of an N-body snapshot. It is a tool for running N-body simulations from isolated galaxies to cosmological simulations. It has a graphical user interface (based on QT 5.X API), uses a fast 3D engine (OPenGL and GLSL), and is generic with the possibility to load different kinds of input files.") (license license:cecill))) (define-public gnuastro (package (name "gnuastro") (version "0.22") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/gnuastro/gnuastro-" version ".tar.lz")) (sha256 (base32 "15rljx1mx9dyvni17qpj7y9gv086cvmjf9f5j34m1pbiyn989fqz")))) (build-system gnu-build-system) (arguments '(#:configure-flags '("--disable-static"))) (inputs (list cfitsio curl gsl libgit2 libjpeg-turbo libtiff wcslib zlib)) (native-inputs (list libtool lzip)) (home-page "https://www.gnu.org/software/gnuastro/") (synopsis "Astronomy utilities") (description "The GNU Astronomy Utilities (Gnuastro) is a suite of programs for the manipulation and analysis of astronomical data.") (license license:gpl3+))) (define-public phd2 (package (name "phd2") (version "2.6.13") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/OpenPHDGuiding/phd2") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "0shr50ngi7dliijy8fxrd1c4hzkm4vp4m0a4m0d9gvrx56vzyx0s")) (modules '((guix build utils) (ice-9 ftw) (srfi srfi-26))) (snippet #~(begin ;; XXX: 'delete-all-but' is copied from the turbovnc package. (define (delete-all-but directory . preserve) (define (directory? x) (and=> (stat x #f) (compose (cut eq? 'directory <>) stat:type))) (with-directory-excursion directory (let* ((pred (negate (cut member <> (append '("." "..") preserve)))) (items (scandir "." pred))) (for-each (lambda (item) (if (directory? item) (delete-file-recursively item) (delete-file item))) items)))) (delete-all-but "thirdparty" "thirdparty.cmake"))))) (build-system cmake-build-system) (arguments (list #:configure-flags #~(list "-DOPENSOURCE_ONLY=yes" "-DUSE_SYSTEM_CFITSIO=yes" "-DUSE_SYSTEM_EIGEN3=yes" "-DUSE_SYSTEM_GTEST=yes" "-DUSE_SYSTEM_LIBINDI=yes" "-DUSE_SYSTEM_LIBUSB=yes"))) (native-inputs (list gettext-minimal googletest perl pkg-config python)) (inputs (list cfitsio curl eigen gtk+ indi libnova libusb wxwidgets zlib)) (home-page "https://openphdguiding.org") (synopsis "Teleskope guiding software") (description "PHD2 is the enhanced, second generation version of the PHD guiding software from Stark Labs.") (license license:bsd-3))) (define-public sextractor (package (name "sextractor") (version "2.28.0") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/astromatic/sextractor") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 "15v7brjiraj2rdyxiidcgb58b3dqzdd363j31cjrfqhd1wc8ii5j")))) (build-system gnu-build-system) ;; NOTE: (Sharlatan-20210124T103117+0000): Building with `atlas' is failing ;; due to missing shared library which required on configure phase. Switch ;; build to use `openblas' instead. It requires FFTW with single precision ;; `fftwf'. (arguments (list #:configure-flags #~(list "--enable-openblas" (string-append "--with-cfitsio-incdir=" #$(this-package-input "cfitsio") "/include") (string-append "--with-cfitsio-libdir=" #$(this-package-input "cfitsio") "/lib") (string-append "--with-fftw-incdir=" #$(this-package-input "fftwf") "/include") (string-append "--with-fftw-libdir=" #$(this-package-input "fftwf") "/lib") (string-append "--with-openblas-incdir=" #$(this-package-input "openblas") "/include") (string-append "--with-openblas-libdir=" #$(this-package-input "openblas") "/lib")))) (native-inputs (list autoconf automake libtool)) (inputs (list cfitsio fftwf openblas)) (home-page "https://www.astromatic.net/software/sextractor") (synopsis "Extract catalogs of sources from astronomical images") (description "SExtractor is a program that builds a catalogue of objects from an astronomical image. Although it is particularly oriented towards reduction of large scale galaxy-survey data, it can perform reasonably well on moderately crowded star fields.") (license license:gpl3+))) (define-public siril (package (name "siril") (version "1.2.3") (source (origin (method git-fetch) (uri (git-reference (url "https://gitlab.com/free-astro/siril") (commit version))) (sha256 (base32 "0gkd8w2bpwq4ibl3vawx008yrm5k6zlj77lp98fflffcf7cj8hr5")) (file-name (git-file-name name version)))) (build-system meson-build-system) (arguments (list #:glib-or-gtk? #t #:imported-modules `(,@%meson-build-system-modules (guix build glib-or-gtk-build-system)) #:modules '((guix build meson-build-system) ((guix build glib-or-gtk-build-system) #:prefix glib-or-gtk:) (guix build utils)) #:phases #~(modify-phases %standard-phases (add-after 'unpack 'generate-gdk-pixbuf-loaders-cache-file (assoc-ref glib-or-gtk:%standard-phases 'generate-gdk-pixbuf-loaders-cache-file)) (add-after 'install 'wrap-program (lambda* _ (wrap-program (string-append #$output "/bin/siril") ;; Wrapping GDK_PIXBUF_MODULE_FILE to load icons in pure ;; environments. `("GDK_PIXBUF_MODULE_FILE" = (,(getenv "GDK_PIXBUF_MODULE_FILE"))))))))) (native-inputs (list cmake git libconfig pkg-config)) (inputs (list cfitsio (librsvg-for-system) exiv2 ffms2 fftwf gsl gdk-pixbuf gtk+ json-glib libheif bash-minimal ;for wrap-program libraw librtprocess opencv)) (home-page "https://siril.org/") (synopsis "Image processing software for amateur astronomy") (description "This package provides an astronomical image processing tool - SIRIL. It is specially tailored for noise reduction and improving the signal/noise ratio of an image from multiple captures, as required in astronomy. SIRIL can align automatically or manually, stack and enhance pictures from various file formats, even image sequence files (films and SER files). It works well with limited system resources, like in embedded platforms, but is also very fast when run on more powerful computers and provides conversion to FITS from a large number of image formats.") (license license:gpl3+))) (define-public splash (package (name "splash") (version "3.10.3") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/danieljprice/splash") (commit (string-append "v" version)))) (sha256 (base32 "077s9if7fmccvhsbp0dhvyqcil46vpbgdm1y6qn6h34r8lfqj9z6")) (file-name (git-file-name name version)))) (build-system gnu-build-system) (arguments ;; FIXME: Tests failed ;; Issue submited upstream https://github.com/danieljprice/splash/issues/67 ;; ;; make: *** No rule to make target 'test_interpolate3D.o', needed by 'test1'. Stop. ;; (list #:tests? #f #:parallel-build? #f ;parallel build fails #:make-flags #~(list "SYSTEM=gfortran" "PREFIX=" (string-append "GIZA_DIR=" #$(this-package-input "giza")) (string-append "DESTDIR=" #$output)) #:phases #~(modify-phases %standard-phases (delete 'configure) (add-before 'install 'create-install-dirrectories (lambda _ (mkdir-p (string-append #$output "/bin"))))))) (native-inputs (list gfortran pkg-config perl python-wrapper)) (inputs (list cairo cfitsio giza)) (home-page "https://users.monash.edu.au/~dprice/splash/") (synopsis "Astrophysical visualisation tool for smoothed particle hydrodynamics") (description "SPLASH is visualisation tool for Smoothed Particle Hydrodynamics (SPH) simulations in one, two and three dimensions, developed mainly for astrophysics. It uses a command-line menu but data can be manipulated interactively in the plotting window.") (license license:gpl2+))) (define-public skymaker (package (name "skymaker") (version "3.10.5") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/astromatic/skymaker") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 "0kcy0lfm25gihahpr41ghhw3b8znzczzg9rrlkfih043h2pfsm5l")))) (build-system gnu-build-system) (arguments (list #:configure-flags #~(list "CPPFLAGS=-fcommon" (string-append "--with-fftw-libdir=" #$(this-package-input "fftwf") "/lib") (string-append "--with-fftw-incdir=" #$(this-package-input "fftwf") "/include")))) (native-inputs (list autoconf automake libtool pkg-config)) (inputs (list fftwf)) (home-page "https://www.astromatic.net/software/skymaker") (synopsis "Astronomical image simulator") (description "SkyMaker is a program that simulates astronomical images. It accepts object lists in ASCII generated by the Stuff program to produce realistic astronomical fields. SkyMaker is part of the @uref{https://www.astromatic.net/projects/efigi, EFIGI} development project.") (license license:gpl3+))) (define-public stackistry (package (name "stackistry") (version "0.3.0") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/GreatAttractor/stackistry") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "0rz29v33n0x0k40hv3v79ym5ylch1v0pbph4i21809gz2al5p7dq")))) (build-system gnu-build-system) (arguments (list #:tests? #f ; No test target #:make-flags #~(list (string-append "SKRY_INCLUDE_PATH=" #$(this-package-input "libskry") "/include") (string-append "SKRY_LIB_PATH=-L" #$(this-package-input "libskry") "/lib") (string-append "LIBAV_INCLUDE_PATH=" #$(this-package-input "ffmpeg") "/include")) #:phases #~(modify-phases %standard-phases ;; no configure and tests are provided (delete 'configure) (add-after 'unpack 'fix-paths (lambda _ (substitute* "src/main.cpp" (("\"\\.\\.\", \"lang\"") "\"../share/stackistry\", \"lang\"")) (substitute* "src/utils.cpp" (("\"\\.\\.\", \"icons\"") "\"../share/stackistry\", \"icons\"")))) (replace 'install ;; The Makefile lacks an ‘install’ target. (lambda _ (let* ((out #$output) (bin (string-append out "/bin")) (icons (string-append out "/share/stackistry/icons")) (lang (string-append out "/share/stackistry/lang"))) (copy-recursively "bin" bin) (copy-recursively "icons" icons) (copy-recursively "lang" lang))))))) (native-inputs (list pkg-config)) (inputs (list gtkmm-3 libskry ffmpeg-4)) (home-page "https://github.com/GreatAttractor/stackistry") (synopsis "Astronomical lucky imaging/image stacking tool") (description "Stackistry implements the lucky imaging principle of astronomical imaging: creating a high-quality still image out of a series of many (possibly thousands) low quality ones (blurred, deformed, noisy). The resulting image stack typically requires post-processing, including sharpening (e.g. via deconvolution). Such post-processing is not performed by Stackistry.") (license license:gpl3+))) (define-public stellarium (package (name "stellarium") (version "24.2") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/Stellarium/stellarium") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "01iq1cxbhr3xknzpk4spflxj3msf9wk19b4lqlifi1pwaz18pb5n")))) (build-system cmake-build-system) ;; TODO: Complete documentation build and split into dedicated outputs. (arguments (list ;; FIXME: Tests keep failing on 100% when preparing test-suit for INDI. #:tests? #f #:test-target "test" #:configure-flags #~(list "-DENABLE_GPS=1" ;; TODO: Enable when all of the dependencies are availalbe for Qt6. "-DENABLE_QT6=0" "-DENABLE_TESTING=0" (string-append "-DCMAKE_CXX_FLAGS=-isystem " #$(this-package-input "qtserialport") "/include/qt5")) #:phases #~(modify-phases %standard-phases (add-before 'check 'set-offscreen-display (lambda _ (setenv "QT_QPA_PLATFORM" "offscreen") (setenv "HOME" "/tmp")))))) (inputs (list calcmysky-qt5 gpsd indi libnova nlopt openssl qtbase-5 qtcharts qtlocation-5 qtmultimedia-5 qtpositioning qtscript qtserialport-5 qttranslations qtwebengine-5 qxlsx-qt5 zlib)) (native-inputs (list doxygen gettext-minimal graphviz mesa perl python-wrapper qttools-5)) (home-page "https://stellarium.org/") (synopsis "3D sky viewer") (description "Stellarium is a planetarium. It shows a realistic sky in 3D, just like what you see with the naked eye, binoculars, or a telescope. It can be used to control telescopes over a serial port for tracking celestial objects.") (license license:gpl2+))) (define-public python-astropy (package (name "python-astropy") (version "6.1.2") (source (origin (method url-fetch) (uri (pypi-uri "astropy" version)) (sha256 (base32 "0fhx9zjsqp7z8z8phafpbwpb46idrbsamkfg42l8j0z94i73s452")) (modules '((guix build utils))) (snippet '(begin ;; Remove Python bundles. (with-directory-excursion "astropy/extern" (for-each delete-file-recursively '("ply" "configobj"))) ;; Remove cextern bundles. Check bundled versions against available ;; in Guix in the future update of astropy. ;; Linking against an external cfitsio version has been removed, ;; see https://github.com/astropy/astropy/pull/14311 (with-directory-excursion "cextern" (for-each delete-file-recursively '("expat" "wcslib"))))))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "--pyargs" "astropy" "-n" "auto" "-k" (string-append ;; Skip tests that need remote data. "not remote_data" ;; ValueError: The truth value of an array with more than ;; one element is ambiguous. Use a.any() or a.all() " and not test_table_comp[t16-t26]" ;; E Unreliable test timings! <...> " and not test_datetime_timedelta_roundtrip")) #:phases #~(modify-phases %standard-phases (add-after 'unpack 'preparations (lambda _ ;; Use our own libraries in place of bundles. (setenv "ASTROPY_USE_SYSTEM_ALL" "1") ;; Relax xfail tests. (substitute* "pyproject.toml" (("xfail_strict = true") "xfail_strict = false")) ;; Replace reference to external ply. (substitute* "astropy/utils/parsing.py" (("astropy.extern.ply") "ply")) ;; Replace reference to external configobj. (substitute* "astropy/config/configuration.py" (("from astropy.extern.configobj ") "")))) ;; This file is opened in both install and check phases. (add-before 'install 'writable-compiler (lambda _ (make-file-writable "astropy/_compiler.c"))) (replace 'check (lambda* (#:key tests? test-flags #:allow-other-keys) (when tests? (setenv "HOME" "/tmp") (make-file-writable "astropy/_compiler.c") ;; Extensions have to be rebuilt before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace" "-j" (number->string (parallel-job-count))) ;; Step out of the source directory to avoid interference; we ;; want to run the installed code with extensions etc. (with-directory-excursion "/tmp" (apply invoke "pytest" "-v" test-flags)))))))) (native-inputs (list pkg-config python-colorlog python-coverage python-cython-3 python-extension-helpers python-h5py python-ipython python-jplephem python-objgraph python-pandas python-pyarrow python-pytest python-pytest-astropy python-pytest-astropy-header python-pytest-mpl python-pytest-xdist python-scikit-image python-setuptools-scm python-sgp4 python-skyfield python-threadpoolctl python-timezonefinder)) (inputs (list expat wcslib)) (propagated-inputs (list python-astropy-iers-data python-configobj python-matplotlib python-numpy python-packaging python-ply python-pyerfa python-pyyaml python-scipy)) (home-page "https://www.astropy.org/") (synopsis "Core package for Astronomy in Python") (description "Astropy is a single core package for Astronomy in Python. It contains much of the core functionality and some common tools needed for performing astronomy and astrophysics.") (license license:bsd-3))) (define-public python-astropy-healpix (package (name "python-astropy-healpix") (version "1.0.3") (source (origin (method url-fetch) (uri (pypi-uri "astropy_healpix" version)) (sha256 (base32 "0ilpwwvdnd4nchivwnbiy1hl07hd2mdg4wb90r2p05kvr5z2lpfy")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases ;; This file is opened in both install and check phases. (add-before 'install 'writable-compiler (lambda _ (make-file-writable "astropy_healpix/_compiler.c"))) (add-before 'check 'prepare-test-environment (lambda _ ;; Extensions have to be rebuilt before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace") (make-file-writable "astropy_healpix/_compiler.c")))))) (native-inputs (list python-extension-helpers python-hypothesis python-pytest-astropy python-setuptools-scm)) (propagated-inputs (list python-astropy python-numpy)) (home-page "https://github.com/astropy/astropy-healpix") (synopsis "HEALPix for Astropy") (description "This package provides HEALPix to the Astropy project.") (license license:bsd-3))) (define-public python-astropy-iers-data (package (name "python-astropy-iers-data") ;; In case of changing the source method git-fetch, consider to check the ;; tag as it's not following the PyPI version, see ;; <https://github.com/astropy/astropy-iers-data/issues/17>. (version "0.2024.8.12.0.32.58") (source (origin (method url-fetch) (uri (pypi-uri "astropy_iers_data" version)) (sha256 (base32 "1xw4s6vyl29miccbs3ylyichj1rcmzmya3lmh27f173n7k2zb5g0")))) (build-system pyproject-build-system) (arguments (list ;; Dependencies cycle wit python-astropy, see ;; <https://github.com/astropy/astropy-iers-data/issues/21>. #:tests? #f #:phases #~(modify-phases %standard-phases (add-before 'build 'set-env-version (lambda _ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))))) (native-inputs (list python-hypothesis python-pytest python-pytest-remotedata python-setuptools-scm)) (home-page "https://docs.astropy.org/en/latest/utils/iers.html") (synopsis "IERS Earth Rotation and Leap Second tables for the astropy core package") (description "The @code{iers} package provides access to the tables provided by the @acronym{International Earth Rotation and Reference Systems, IERS} service, in particular the @url{https://www.iers.org/IERS/EN/DataProducts/EarthOrientationData/eop.html, Earth Orientation data} allowing interpolation of published UT1-UTC and polar motion values for given times. The UT1-UTC values are used in @url{https://docs.astropy.org/en/latest/time/index.html#astropy-time, Time and Dates (astropy.time)} to provide UT1 values, and the polar motions are used in @code{astropy.coordinates} to determine Earth orientation for celestial-to-terrestrial coordinate transformations.") (license license:bsd-3))) (define-public python-astroplan (package (name "python-astroplan") (version "0.10.1") (source (origin (method url-fetch) (uri (pypi-uri "astroplan" version)) (sha256 (base32 "0nb97fz0mlypdlvs09wyh0z7mxw0d6aqqkd9yfzhlqz1fwrprn9r")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "astroplan/tests" "-k" (string-append ;; Test requiring newer python-pytz "not test_timezone" ;; Disable tests requiring remote data. " and not test_FixedTarget_from_name" " and not test_altitude_constraint" " and not test_at_night_basic" " and not test_caches_shapes" " and not test_compare_airmass_constraint_and_observer" " and not test_compare_altitude_constraint_and_observer" " and not test_docs_example" " and not test_eclipses" " and not test_eq_observer" " and not test_event_observable" " and not test_galactic_plane_separation" " and not test_get_skycoord" " and not test_hash_observer" " and not test_is_night" " and not test_local_time_constraint_hawaii_tz" " and not test_local_time_constraint_utc" " and not test_moon_illumination" " and not test_moon_separation" " and not test_observability_table" " and not test_observer_lon_lat_el" " and not test_regression_airmass_141" " and not test_regression_shapes" " and not test_sun_separation" " and not test_tonight") "--ignore=astroplan/tests/test_scheduling.py") #:phases #~(modify-phases %standard-phases (add-before 'check 'prepare-test-environment (lambda _ (setenv "HOME" "/tmp") (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-astropy python-astroquery python-matplotlib python-numpy python-pytz python-six)) (native-inputs (list python-pytest-astropy python-pytest-mpl python-setuptools-scm)) (home-page "https://github.com/astropy/astroplan") (synopsis "Observation planning package for astronomers") (description "This package provides a flexible toolbox for observation planning and scheduling. When complete, the goal is to be easy for Python beginners and new observers to to pick up, but powerful enough for observatories preparing nightly and long-term schedules. Features: @itemize @item calculate rise/set/meridian transit times, alt/az positions for targets at observatories anywhere on Earth @item built-in plotting convenience functions for standard observation planning plots (airmass, parallactic angle, sky maps) @item determining observability of sets of targets given an arbitrary set of constraints (i.e., altitude, airmass, moon separation/illumination, etc.) @end itemize") (license license:bsd-3))) (define-public python-astroquery (package (name "python-astroquery") (version "0.4.7") (source (origin (method url-fetch) (uri (pypi-uri "astroquery" version)) (sha256 (base32 "1jbyfhqk74wsdjxzqi0hcrgc7ha4q8cyjx96nv6w9bjg1b5vlzq4")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "--pyargs" "astroquery" "-m" "not remote_data" ;; Some tests failed with parallel run, see ;; <https://github.com/astropy/astroquery/issues/2968>. ;; "-n" "auto" "-k" (string-append ;; Failed: DID NOT RAISE <class ;; 'astropy.utils.exceptions.AstropyDeprecationWarning'> "not test_raises_deprecation_warning")) #:phases #~(modify-phases %standard-phases (replace 'check (lambda* (#:key tests? test-flags #:allow-other-keys) (when tests? ;; Some tests require write access to $HOME. (setenv "HOME" "/tmp") ;; Step out of the source directory to avoid interference; ;; we want to run the installed code with extensions etc. (with-directory-excursion "/tmp" (apply invoke "pytest" "-v" test-flags)))))))) (propagated-inputs (list python-astropy python-beautifulsoup4 python-html5lib python-keyring python-numpy python-pyvo python-requests)) (native-inputs (list python-astropy-healpix python-matplotlib ;; python-mocpy : Not packed yet, optional python-pytest-astropy python-pytest-dependency python-regions)) (home-page "https://astroquery.readthedocs.io/en/latest/index.html") (synopsis "Access online astronomical data resources") (description "Astroquery is a package that contains a collection of tools to access online Astronomical data. Each web service has its own sub-package.") (license license:bsd-3))) (define-public python-astroscrappy (package (name "python-astroscrappy") (version "1.2.0") (source (origin (method url-fetch) (uri (pypi-uri "astroscrappy" version)) (sha256 (base32 "0r2alg8imr201ykjsvr6y43bzw8mwbc4ddprn8f6qfw9k4hsx8ff")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "--pyargs" "astroscrappy") #:phases #~(modify-phases %standard-phases (add-after 'unpack 'preparations (lambda _ (setenv "HOME" "/tmp"))) (add-before 'install 'writable-compiler (lambda _ (make-file-writable "astroscrappy/_compiler.c"))) (add-before 'check 'tests-preparation (lambda _ (make-file-writable "astroscrappy/_compiler.c") (invoke "python" "setup.py" "build_ext" "--inplace")))))) (native-inputs (list python-cython-3 python-extension-helpers python-pytest-astropy python-scipy python-setuptools-scm)) (propagated-inputs (list python-astropy python-numpy)) (home-page "https://github.com/astropy/astroscrappy") (synopsis "Speedy Cosmic Ray Annihilation Package in Python") (description "Astro-SCRAPPY is designed to detect cosmic rays in images (numpy arrays), based on Pieter van Dokkum's L.A.Cosmic algorithm. Much of this was originally adapted from cosmics.py written by Malte Tewes. This is designed to be as fast as possible so some of the readability has been sacrificed, specifically in the C code.") (license license:bsd-3))) (define-public python-bayesicfitting (package (name "python-bayesicfitting") (version "3.2.1") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/dokester/BayesicFitting") ;; Tag style has been changed, see ;; <https://github.com/dokester/BayesicFitting/issues/23>. (commit (string-append "v." version)))) (file-name (git-file-name name version)) (sha256 (base32 "0brqvy4r75vh93lj4jwv8wcrc96ka1v44f5ckjvr65y30plnfwg2")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "-m" "unittest" "discover" "test") #:phases #~(modify-phases %standard-phases (replace 'check (lambda* (#:key tests? test-flags #:allow-other-keys) (when tests? (apply invoke "python" test-flags))))))) (propagated-inputs (list python-astropy python-future python-matplotlib python-numpy python-scipy)) (home-page "https://www.bayesicfitting.nl") (synopsis "Python Toolbox for Astronimical Bayesian fitting") (description "The BayesicFitting package is a python version of the the fitter classes in @acronym{HCSS, Herschel Common Science System}. HCSS was the all encompassing software system for the operations and analysis of the ESA satelite Herschel.") (license license:gpl3+))) (define-public python-casa-formats-io (package (name "python-casa-formats-io") (version "0.3.0") (source (origin (method url-fetch) (uri (pypi-uri "casa-formats-io" version)) (sha256 (base32 "16qwr6yq86qgdb0lvnmfm5mn6g2d29b1vrmfv26v77kxm6szxr8h")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-before 'check 'build-extensions (lambda _ (invoke "python" "setup.py" "build_ext" "--inplace")))))) (native-inputs (list python-pytest python-pytest-cov python-pytest-openfiles)) (propagated-inputs (list python-astropy python-click python-dask python-numpy)) (home-page "https://casa-formats-io.readthedocs.io/") (synopsis "Dask-based reader for CASA data") (description "The @code{casa-formats-io} package is a small package which implements functionality to read data stored in @acronym{CASA, Common Astronomy Software Applications} formats (such as @file{.image} datasets). This implementation is independent of and does not use @code{casacore}.") (license license:lgpl2.0))) (define-public python-ccdproc (package (name "python-ccdproc") (version "2.4.2") (source (origin (method url-fetch) (uri (pypi-uri "ccdproc" version)) (sha256 (base32 "14faivm9nihpdwzg0jx1c9zr7jk22gjfjw78raq6h63ypl10i6yx")))) (build-system pyproject-build-system) (native-inputs (list python-memory-profiler python-pytest-astropy)) (propagated-inputs (list python-astropy python-astroscrappy python-numpy python-reproject python-scikit-image python-scipy)) (home-page "http://ccdproc.readthedocs.io/") (synopsis "Basic data reductions of CCD images") (description "The ccdproc package provides many of the necessary tools for processing of CCD images built on a framework to provide error propagation and bad pixel tracking throughout the reduction process.") (license license:bsd-3))) (define-public python-cdflib (package (name "python-cdflib") (version "1.3.1") (source (origin (method git-fetch) ; no tests in PyPI release (uri (git-reference (url "https://github.com/MAVENSDC/cdflib") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 "0zmz9wjhlq43lqy5k4fld9cj5k39s1hkkaligrn3kpf9hcbd79qn")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-before 'build 'set-env-version (lambda _ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))) (add-before 'check 'set-home-env (lambda _ (setenv "HOME" (getcwd))))))) (propagated-inputs (list python-numpy)) (native-inputs (list python-astropy python-hypothesis python-pytest python-pytest-cov python-pytest-remotedata python-setuptools-scm python-xarray)) (home-page "https://github.com/MAVENSDC/cdflib") (synopsis "Python library to deal with NASA's CDF astronmical data format") (description "This package provides a Python @acronym{CDF, Computable Document Format} reader toolkit. It provides the following functionality: @itemize @item Ability to read variables and attributes from CDF files @item Writes CDF version 3 files @item Can convert between CDF time types (EPOCH/EPOCH16/TT2000) to other common time formats @item Can convert CDF files into XArray Dataset objects and vice versa, attempting to maintain ISTP compliance @end itemize") (license license:expat))) (define-public python-cmyt (package (name "python-cmyt") (version "2.0.0") (source (origin (method url-fetch) (uri (pypi-uri "cmyt" version)) (sha256 (base32 "1zabmckr1z637pfqqvlkj0asfqqvx2x92163dby8x0c8yiqgdvjb")))) (build-system pyproject-build-system) (native-inputs (list python-colorspacious python-pytest python-pytest-mpl)) (propagated-inputs (list python-matplotlib python-numpy)) (home-page "https://yt-project.org/") (synopsis "Matplotlib colormaps from the yt project") (description "This package provides a range of colormaps designed for scientific use with Matplotlib. It includes perceptually uniform sequential colormaps such as @code{abre}, @code{dusk}, @code{kepl}, and @code{octarine}, as well as monochromatic sequential colormaps like @code{blue}, @code{green}, and @code{red}, and others (@code{algae}, @code{pastel}, and @code{xray}).") (license license:bsd-3))) (define-public python-crds (package (name "python-crds") (version "11.18.1") (source (origin (method url-fetch) (uri (pypi-uri "crds" version)) (sha256 (base32 "0k0q76mc9a18lrjqah8yb7v97dmhlwhsxyqr9r5rk0w4iqi6j7pp")))) (build-system pyproject-build-system) (arguments (list ;; XXX: Tests require Internet access to https://hst-crds.stsci.edu and ;; additional test data. See: ;; https://github.com/spacetelescope/crds/blob/master/setup_test_cache #:tests? #f)) (propagated-inputs (list python-asdf python-astropy python-boto3 python-filelock python-numpy python-parsley python-pysynphot python-roman-datamodels python-stsynphot python-requests)) (native-inputs (list python-setuptools-scm)) (home-page "https://hst-crds.stsci.edu") (synopsis "Calibration Reference Data System for HST and JWST") (description "CRDS is a package used for working with astronomical reference files for the HST and JWST telescopes. CRDS is useful for performing various operations on reference files or reference file assignment rules. CRDS is used to assign, check, and compare reference files and rules, and also to predict those datasets which should potentially be reprocessed due to changes in reference files or assignment rules. CRDS has versioned rules which define the assignment of references for each type and instrument configuration. CRDS has web sites corresponding to each project @url{http://hst-crds.stsci.edu} or @url{https://jwst-crds.stsci.edu/} which record information about reference files and provide related services.") (license license:bsd-3))) (define-public python-czml3 (package (name "python-czml3") (version "1.0.2") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/poliastro/czml3") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "0gsdffn5w7j1aridvmx4xh6axvmbmqjwawacc8fnshpcyh4md5pn")))) (build-system pyproject-build-system) (propagated-inputs (list python-attrs python-dateutil python-w3lib)) (native-inputs (list python-astropy python-pytest python-pytest-mypy)) (home-page "https://github.com/poliastro/czml3") (synopsis "Python library to write CZML") (description "CZML3 is a Python library to write CZML, a JSON format for describing a time-dynamic graphical scene, primarily for display in a web browser running Cesium.") (license license:expat))) (define-public python-drms (package (name "python-drms") (version "0.8.0") (source (origin (method url-fetch) (uri (pypi-uri "drms" version)) (sha256 (base32 "19lqy510d7iyxfz445h2rn4d0rvmd4d3lnjmvbkvv270ckpfw09f")))) (build-system pyproject-build-system) (native-inputs (list python-astropy python-pytest-astropy python-setuptools-scm)) (propagated-inputs (list python-numpy python-pandas)) (home-page "https://sunpy.org") (synopsis "Access astronomical HMI, AIA and MDI data with Python") (description "DRMS module provides an easy-to-use interface for accessing HMI, AIA and MDI data with Python. It uses the publicly accessible JSOC (@url{http://jsoc.stanford.edu/}) DRMS server by default, but can also be used with local NetDRMS sites.") (license license:bsd-2))) (define-public python-drizzle (package (name "python-drizzle") (version "1.15.2") (source (origin (method git-fetch) ;PyPi doesn't have the test data sets (uri (git-reference (url "https://github.com/spacetelescope/drizzle") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 "1fp6gcvp6nz4a2mmy9vjn5wwywldhkg8bjjgb4ldn0vpv9k4nv8q")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-before 'build 'set-env-version (lambda _ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))) (add-before 'check 'build-extensions (lambda _ ;; Cython extensions have to be built before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-astropy python-numpy)) (native-inputs (list python-pytest python-setuptools-scm)) (home-page "https://github.com/spacetelescope/drizzle") (synopsis "Astronomical tool for combining dithered images into a single image") (description "The drizzle library is a Python package for combining dithered images into a single image. This library is derived from code used in DrizzlePac. Like DrizzlePac, most of the code is implemented in the C language. The biggest change from DrizzlePac is that this code passes an array that maps the input to output image into the C code, while the DrizzlePac code computes the mapping by using a Python callback. Switching to using an array allowed the code to be greatly simplified.") (license license:bsd-3))) (define-public python-dust-extinction (package (name "python-dust-extinction") (version "1.5") (source (origin (method url-fetch) (uri (pypi-uri "dust_extinction" version)) (sha256 (base32 "0f0g6gh4kj83xfv0cdp30dahs80pnhsj7c6ryz3f59qf6d5zqard")))) (build-system pyproject-build-system) (propagated-inputs (list python-astropy python-scipy)) (native-inputs (list python-pytest-astropy)) (home-page "http://dust-extinction.readthedocs.io/") (synopsis "Interstellar Dust Extinction Models") (description "This package provides astronomical interstellar dust extinction curves implemented using the astropy.modeling framework.") (license license:bsd-3))) (define-public python-ephem (package (name "python-ephem") (version "4.1.5") (source (origin (method url-fetch) (uri (pypi-uri "ephem" version)) (sha256 (base32 "0ainqbnvw320pc61q5b6ad6f2mhn1pvrlnq489cwfx0m82mahr0c")))) (build-system pyproject-build-system) (native-inputs (list tzdata)) (home-page "https://rhodesmill.org/pyephem/") (synopsis "Compute positions of the planets and stars") (description "PyEphem provides an @code{ephem} Python package for performing high-precision astronomy computations. The name ephem is short for the word ephemeris, which is the traditional term for a table giving the position of a planet, asteroid, or comet for a series of dates.") (license license:expat))) (define-public python-hvpy (package (name "python-hvpy") (version "1.1.0") (source (origin (method url-fetch) (uri (pypi-uri "hvpy" version)) (sha256 (base32 "0bly1bgp0axxhzzf5imqsgmms41z8cxbjahxsibvb55dk94gwig6")))) (build-system pyproject-build-system) (arguments (list #:tests? #f)) ; Requires HTTP(S) access to api.beta.helioviewer.org (propagated-inputs (list python-pydantic-2 python-pydantic-settings python-requests)) (native-inputs (list python-pytest python-pytest-astropy)) (home-page "https://helioviewer.org/") (synopsis "Helioviewer Python API Wrapper") (description "@code{hvpy} is a Python API wrapper around the formal @url{Helioviewer API, https://api.helioviewer.org/docs/v2/}.") (license license:bsd-2))) (define-public python-kanon (package (name "python-kanon") (version "0.6.6") (source (origin (method git-fetch) ; no release in PyPI (uri (git-reference (url "https://github.com/ALFA-project-erc/kanon") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "0sg9yrsas5xmhbw6mhfyxsxh9i060af6v02whr9fqgv687fiyrhc")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list ;"--numprocesses" "auto" ;; XXX: This tests failing a lot. "-k" (string-append "not test_attribute_forwardin" " and not test_declination" " and not test_init_basedquantity" " and not test_ptolemy_viz" " and not test_ptolemy_viz" " and not test_quantity" " and not test_read" " and not test_shifting" " and not test_sun_true_position" " and not test_sun_true_position") "--ignore=kanon/tables/__init__.py") #:phases #~(modify-phases %standard-phases ;; See <https://github.com/ALFA-project-erc/kanon/issues/149>. (delete 'sanity-check) (add-after 'unpack 'relax-requirements (lambda _ (substitute* "pyproject.toml" (("version = \"0.0.0\"") (string-append "version = \"" #$version "\"")) ;; RuntimeError: Unable to detect version control ;; system. Checked: Git. Not installed: Mercurial, Darcs, ;; Subversion, Bazaar, Fossil, Pijul. See ;; <https://github.com/blacklanternsecurity/bbot/issues/1257>. (("enable = true") "enable = false")))) (add-before 'check 'prepare-test-environment (lambda _ (setenv "HOME" "/tmp")))))) (native-inputs (list git-minimal python-poetry-core python-poetry-dynamic-versioning python-pytest-astropy python-pytest-xdist python-requests-mock)) (propagated-inputs (list python-astropy python-matplotlib python-numpy python-pandas-1 python-requests python-scipy ;; Optional python-ipykernel python-papermill)) (home-page "https://dishas.obspm.fr") (synopsis "History of astronomy") (description "This package provides a history of astronomy library. Current Features: @itemize @item define standard positional numeral systems with standard arithmetics (BasedReal) @item set your own precision contexts and algorithms on arithmetical operations (PrecisionContext) @item keep track of all operations @item build or import ancient astronomical tables @item perform arithmetical and statistical operations @item support for BasedReal values @item define new calendar types @item date conversions @item collection of mathematical models used for all kinds of geocentric astronomical tables @end itemize") (license license:bsd-3))) (define-public python-mpl-animators (package (name "python-mpl-animators") (version "1.2.0") (source (origin (method url-fetch) (uri (pypi-uri "mpl_animators" version)) (sha256 (base32 "0xxzwxp2zss2s5ci6d349nfdc4hcbm10pqmf5zf14yn66plc1r4k")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-before 'check 'set-home (lambda _ ;; Relax matplotlib warning: ... because the default path ;; (/homeless-shelter/.config/matplotlib) is not a writable ;; directory ... (setenv "HOME" "/tmp")))))) (native-inputs (list python-pytest python-pytest-doctestplus python-pytest-mpl python-pytest-xdist python-setuptools-scm)) (propagated-inputs (list python-astropy python-matplotlib python-numpy)) (home-page "https://sunpy.org") (synopsis "Interactive animations with matplotlib") (description "The @code{mpl_animators} package provides a set of classes which allow the easy construction of interactive matplotlib widget based animations.") (license license:bsd-3))) (define-public python-naima (package (name "python-naima") (version "0.10.0") (source (origin (method url-fetch) (uri (pypi-uri "naima" version)) (sha256 (base32 "1lng2prl2kzzpgrkj11hl53cvqdh0gpk8cdqkvcg08k3bivzk8q8")))) (build-system pyproject-build-system) (propagated-inputs (list python-astropy python-corner python-emcee python-h5py python-matplotlib python-pyyaml python-scipy)) (native-inputs (list python-pytest python-setuptools-scm)) (home-page "http://github.com/zblz/naima") (synopsis "Derivation of non-thermal particle distributions through MCMC spectral fitting") (description "This package implement functionality for computation of non-thermal radiation from relativistic particle populations. It includes tools to perform MCMC fitting of radiative models to X-ray, GeV, and TeV spectra using @code{emcee}, an affine-invariant ensemble sampler for Markov Chain Monte Carlo.") (license license:bsd-3))) (define-public python-ndcube (package (name "python-ndcube") (version "2.2.2") (source (origin (method url-fetch) (uri (pypi-uri "ndcube" version)) (sha256 (base32 "0d82xldinvjw4csql4w3k44ibprbz0b0g5ixq9a5f6c7zbvfc24l")))) (build-system pyproject-build-system) (arguments (list ;; Break cycle: python-ndcube -> python-specutils -> python-ndcube, see ;; <https://github.com/sunpy/ndcube/issues/733>. #:test-flags #~(list "-k" "not test_rebin_specutils") #:phases #~(modify-phases %standard-phases (add-after 'unpack 'break-cycle (lambda _ (substitute* "ndcube/tests/test_ndcube.py" (("from specutils import Spectrum1D") "")))) (add-before 'check 'set-home-env (lambda _ ;; Tests require HOME to be set. ;; Permission denied: '/homeless-shelter' (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-astropy python-gwcs python-matplotlib python-mpl-animators python-numpy python-reproject)) (native-inputs (list python-dask python-pytest python-pytest-astropy python-pytest-mpl python-scipy python-setuptools-scm python-sunpy)) (home-page "https://docs.sunpy.org/projects/ndcube/") (synopsis "Multi-dimensional contiguous and non-contiguous coordinate aware arrays") (description "@code{ndcube} is a package for manipulating, inspecting and visualizing multi-dimensional contiguous and non-contiguous coordinate-aware data arrays. It combines data, uncertainties, units, metadata, masking, and coordinate transformations into classes with unified slicing and generic coordinate transformations and plotting/animation capabilities. It is designed to handle data of any number of dimensions and axis types (e.g. spatial, temporal, spectral, etc.) whose relationship between the array elements and the real world can be described by @acronym{WCS, World Coordinate System} translations.") (license license:bsd-2))) (define-public python-photutils (package (name "python-photutils") ;; PyPI version for source archive is missing minor 0, See ;; <https://github.com/astropy/photutils/issues/1727> (version "1.13.0") (source (origin (method url-fetch) (uri (pypi-uri "photutils" version)) (sha256 (base32 "1lhpcxh2adknzlmrddqd712yzpwdlqlw9jn49ajj4kz5z7822dns")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "-n" "auto") #:phases #~(modify-phases %standard-phases ;; setup.py was removed in 36c3231ce5b80ad470fa78be2e96df859d2daf41 ;; for some unknown reason, which caused the package to fail to ;; build. It is being recreated based on that commit. (add-after 'unpack 'create-setup.py (lambda _ (call-with-output-file "setup.py" (lambda (port) (format port "from setuptools import setup from extension_helpers import get_extensions setup(ext_modules=get_extensions())"))))) ;; This file is opened in both install and check phases. (add-before 'install 'writable-compiler (lambda _ (make-file-writable "photutils/_compiler.c"))) (add-before 'check 'build-extensions (lambda _ ;; Cython extensions have to be built before running ;; the tests. If it's not build it fails with error: ;; ;; ModuleNotFoundError: No module named ;; 'photutils.geometry.circular_overlap' (make-file-writable "photutils/_compiler.c") (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-astropy python-bottleneck python-gwcs python-matplotlib python-numpy python-rasterio python-scikit-image python-scikit-learn python-scipy python-shapely python-tqdm)) (native-inputs (list python-cython-3 python-extension-helpers python-pytest-astropy python-pytest-xdist python-setuptools-scm)) (home-page "https://github.com/astropy/photutils") (synopsis "Source detection and photometry") (description "Photutils is an Astropy package for detection and photometry of astronomical sources.") (license license:bsd-3))) ;; XXX: The project is archived, maintained fork is available see ;; <https://github.com/poliastro/poliastro/issues/1640>. ;; Maintained fork <https://github.com/pleiszenburg/hapsira>. (define-public python-poliastro (package (name "python-poliastro") (version "0.17.0") (source (origin ;; PyPi tarball lacks tests. (method git-fetch) (uri (git-reference (url "https://github.com/poliastro/poliastro") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "1iclyjp0cvm6hp5qf4fzklszxvhj3idkxgb6a9h7xzg9bf5j5gi2")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "-m" "not remote_data" ;; TODO: Review failing tests later when any upstream ;; suggestions are provided: ;; https://github.com/poliastro/poliastro/issues/1618 "-k" (string-append "not test_czml_add_trajectory" " and not test_czml_custom_packet" " and not test_czml_ground_station" " and not test_czml_groundtrack" " and not test_czml_preamble" ;; This fails with "ufunc 'isfinite' not ;; supported for the input types" " and not test_porkchop_plotting")) #:phases #~(modify-phases %standard-phases (add-after 'unpack 'relax-requirements (lambda _ (substitute* "pyproject.toml" (("5.0,<6") "5.0,<7")))) (add-after 'unpack 'matplotlib-compatibility (lambda _ (substitute* "src/poliastro/plotting/static.py" (("import numpy as np.*" m) (string-append m "\ import itertools\n")) (("( +)self._ax = ax.*" m indent) (string-append m indent "\ self.colors = itertools.cycle(plt.rcParams[\"axes.prop_cycle\"].by_key()[\"color\"])\n")) (("color = next\\(self._ax._get_lines.prop_cycler\\)\\[\"color\"\\]") "color = next(self.colors)")))) ;; NOTE: Tests take about 7-10 minutes to pass. (add-before 'check 'prepare-test-environment (lambda _ (setenv "HOME" "/tmp")))))) (native-inputs (list python-coverage python-hypothesis python-mypy python-flit-core python-pytest python-pytest-cov python-pytest-doctestplus python-pytest-mpl python-pytest-mypy)) (propagated-inputs (list python-astropy python-astroquery python-czml3 python-jplephem python-matplotlib python-numba python-numpy python-pandas python-plotly python-pyerfa python-scipy)) (home-page "https://www.poliastro.space/") (synopsis "Astrodynamics in Python") (description "POLIASTRO is a Python library for interactive Astrodynamics and Orbital Mechanics, with a focus on ease of use, speed, and quick visualization. It provides a simple and intuitive API, and handles physical quantities with units. Some features include orbit propagation, solution of the Lambert's problem, conversion between position and velocity vectors and classical orbital elements and orbit plotting, among others. It focuses on interplanetary applications, but can also be used to analyze artificial satellites in Low-Earth Orbit (LEO).") (license license:expat))) (define-public python-poppy (package (name "python-poppy") (version "1.1.1") (source (origin (method url-fetch) (uri (pypi-uri "poppy" version)) (sha256 (base32 "0s8rb61q8dz66s8d3qg44kb6bb5gi40zl41ik9wyccgb4kyf3brp")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "-n" "auto"))) (propagated-inputs ;; XXX: With python-synphot (marked as optional) package added to the list ;; it tries to download from remote host during tests and fails. Overall ;; tests take up to 5-8min to pass. (list python-astropy python-matplotlib python-numpy python-scipy)) (native-inputs (list python-docutils python-h5py python-pandas python-pytest python-pytest-astropy python-pytest-xdist python-scikit-image python-setuptools-scm python-sphinx)) (home-page "https://poppy-optics.readthedocs.io/") (synopsis "Physical Optics Propagation in Python") (description "@acronym{POPPY, Physical Optics Propagation in Python} is a Python package that simulates physical optical propagation including diffraction. It implements a flexible framework for modeling Fraunhofer and Fresnel diffraction and point spread function formation, particularly in the context of astronomical telescopes. POPPY was developed as part of a simulation package for the James Webb Space Telescope, but is more broadly applicable to many kinds of imaging simulations. It is not, however, a substitute for high fidelity optical design software such as Zemax or Code V, but rather is intended as a lightweight alternative for cases for which diffractive rather than geometric optics is the topic of interest, and which require portability between platforms or ease of scripting.") (license license:bsd-3))) (define-public python-pyavm (package (name "python-pyavm") (version "0.9.6") (source (origin (method url-fetch) (uri (pypi-uri "PyAVM" version)) (sha256 (base32 "0vgjqvddq4a5lnmg8msm7fwqs3r6fc748xzvnhyvc387h0z8pdxk")))) (build-system pyproject-build-system) (propagated-inputs (list python-astropy python-numpy)) (native-inputs (list python-pillow python-pytest python-setuptools-scm)) (home-page "https://astrofrog.github.io/pyavm/") (synopsis "Simple pure-python AVM meta-data handling") (description "PyAVM is a module to represent, read, and write metadata following the @acronym{AVM, Astronomy Visualization Metadata} standard provided by @url{https://www.virtualastronomy.org/avm_metadata.php, vamp} project.") (license license:expat))) (define-public python-pyvo (package (name "python-pyvo") (version "1.5.2") (source (origin (method url-fetch) (uri (pypi-uri "pyvo" version)) (sha256 (base32 "0wcg3jhfwjd9gqs74mw63sgi1yhmgljx1bwk3mxn0p6fv924r8mq")))) (build-system pyproject-build-system) (native-inputs (list python-pytest-astropy python-requests-mock python-setuptools-scm)) (propagated-inputs (list python-astropy python-pillow python-requests)) (home-page "https://github.com/astropy/pyvo") (synopsis "Access Virtual Observatory data and services") (description "PyVO is a package providing access to remote data and services of the Virtual observatory (VO) using Python.") (license license:bsd-3))) (define-public python-regions (package (name "python-regions") (version "0.9") (source (origin (method url-fetch) (uri (pypi-uri "regions" version)) (sha256 (base32 "0kvfdzqry3vcvphd7ldmppbgn3ab97hbfzwxfrlxls92yi41h3i6")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "-n" "auto") #:phases #~(modify-phases %standard-phases ;; setup.py was removed in 84c80a280431adda00641cda5264c7de18b43b2f ;; for some unknown reason, which caused the package to fail to ;; build. It is being recreated based on that commit. (add-after 'unpack 'create-setup.py (lambda _ (call-with-output-file "setup.py" (lambda (port) (format port "from setuptools import setup from extension_helpers import get_extensions setup(ext_modules=get_extensions())"))))) ;; This file is opened in both install and check phases. (add-before 'install 'writable-compiler (lambda _ (make-file-writable "regions/_compiler.c"))) (add-before 'check 'build-extensions (lambda _ (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-astropy python-h5py python-matplotlib python-numpy python-scipy python-shapely)) (native-inputs (list python-cython-3 python-extension-helpers python-pytest-arraydiff python-pytest-astropy python-pytest-runner python-pytest-xdist python-setuptools-scm)) (home-page "https://github.com/astropy/regions") (synopsis "Package for region handling") (description "Regions is an Astropy package for region handling.") (license license:bsd-3))) (define-public python-regularizepsf (package (name "python-regularizepsf") (version "0.3.4") (source (origin (method git-fetch) ; no tests data in the PyPI tarball (uri (git-reference (url "https://github.com/punch-mission/regularizepsf") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 "078nklks6hjq0hgv6wpbh2x1m2yh6kmzyfgdzd9q82lxpjy1vq0i")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-after 'unpack 'relax-requirements (lambda _ (substitute* "setup.py" ;; numpy==1.26.4 (("==1.26.4") ">=1.23")))) (add-before 'check 'build-extensions (lambda _ (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-astropy python-dill python-h5py python-lmfit python-matplotlib python-numpy python-scikit-image python-scipy python-sep)) (native-inputs (list python-cython python-pytest python-pytest-mpl python-pytest-runner)) (home-page "https://github.com/punch-mission/regularizepsf") (synopsis "Point spread function modeling and regularization") (description "This package inplements functionality of @acronym{Point Spread Function, PSF} describing how the optical system spreads light from sources.") (license license:expat))) (define-public python-reproject (package (name "python-reproject") (version "0.14.0") (source (origin (method url-fetch) (uri (pypi-uri "reproject" version)) (sha256 (base32 "1h5v74da32ai9dkhcdn3xx4h05awlxhhnrsdjj1sb644c1vlyg6x")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "--arraydiff" "--arraydiff-default-format=fits" "--numprocesses" "auto" "--pyargs" "reproject") #:phases #~(modify-phases %standard-phases ;; setup.py was removed in a659a260bdd7635cddc8f33c4ea04a3b6d8c1f84 ;; for some unknown reason, which caused the package to fail to ;; build. It is being recreated based on that commit. ;; TODO: Check how to implement it in python-build-system. (add-after 'unpack 'create-setup.py (lambda _ (call-with-output-file "setup.py" (lambda (port) (format port "from setuptools import setup from extension_helpers import get_extensions setup(ext_modules=get_extensions())"))))) (add-before 'install 'writable-compiler (lambda _ (make-file-writable "reproject/_compiler.c"))) (add-before 'check 'writable-compiler (lambda _ (make-file-writable "reproject/_compiler.c"))) (add-before 'check 'prepare-test-environment (lambda _ (setenv "HOME" "/tmp") ;; Cython extensions have to be built before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-asdf python-astropy python-astropy-healpix python-cloudpickle python-dask python-fsspec python-gwcs python-numpy python-pyvo python-scipy python-shapely python-zarr)) (native-inputs (list python-cython-3 python-extension-helpers python-asdf python-gwcs python-pytest-astropy python-pytest-xdist python-pyvo ;; python-sunpy ; circular dependencies, test optional python-setuptools-scm)) (home-page "https://reproject.readthedocs.io") (synopsis "Astronomical image reprojection in Python") (description "This package provides a functionality to reproject astronomical images using various techniques via a uniform interface, where reprojection is the re-gridding of images from one world coordinate system to another e.g. changing the pixel resolution, orientation, coordinate system.") (license license:bsd-3))) (define-public python-sgp4 (package (name "python-sgp4") (version "2.23") (source (origin (method url-fetch) (uri (pypi-uri "sgp4" version)) (sha256 (base32 "0aalbmldks6ykgkcxwkvnp04q0avhv903m5zwvg8i7zvl99xrbfq")))) (build-system pyproject-build-system) (propagated-inputs (list python-numpy)) (home-page "https://github.com/brandon-rhodes/python-sgp4") (synopsis "Track earth satellite TLE orbits using SGP4") (description "This package provides a Python implementation for computations of the position and velocity of an earth-orbiting satellite, given the satellite’s @acronym{TLE, Two-line element set} orbital elements from a source like @url{CelesTrak, https://celestrak.org/}. It implements the most recent version of @acronym{SGP4, Simplified General Perturbation models}, and is regularly run against the SGP4 test suite to make sure that its satellite position predictions agree to within 0.1 mm with the predictions of the standard distribution of the algorithm. This error is far less than the 1–3 km/day by which satellites themselves deviate from the ideal orbits described in TLE files.") (license license:expat))) (define-public python-sunpy (package (name "python-sunpy") (version "6.0.1") (source (origin (method url-fetch) (uri (pypi-uri "sunpy" version)) (sha256 (base32 "1yp7x26fzxs66bfvzaim8ns5q6514l66mbz5gabhlxb9pp8i6i85")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "--numprocesses" "auto" "-k" (string-append ;; XXX: Failed: DID NOT RAISE <class 'ModuleNotFoundError'> ;; It struggles to find python-opencsv package info with ;; 'importlib.metadata' "not test_main_nonexisting_module" " and not test_main_stdlib_module") ;; Requries SpicePy not packed in Guix yet. "--ignore=sunpy/coordinates/tests/test_spice.py") #:phases #~(modify-phases %standard-phases (add-after 'unpack 'relax-requirements (lambda _ (substitute* "pyproject.toml" ;; packaging>=23.0 ((">=23.0") ">=21.3") ;; numpy>=1.23.5 ((">=1.23.5") ">=1.23.2")))) (add-before 'install 'writable-compiler (lambda _ (make-file-writable "sunpy/_compiler.c"))) (add-before 'check 'prepare-test-environment (lambda _ (setenv "HOME" "/tmp") (call-with-output-file "pytest.ini" (lambda (port) (format port "[pytest] python_files = test_*.py")))))))) (native-inputs (list opencv ; For tests, includes OpenCV-Python python-aiohttp python-extension-helpers python-hvpy python-jplephem ;; python-mplcairo ; Not packed yet in Guix python-packaging python-pytest-astropy python-pytest-mock python-pytest-mpl python-pytest-xdist python-setuptools-scm)) (propagated-inputs (list parfive python-asdf python-asdf-astropy python-astropy python-beautifulsoup4 python-cdflib python-dask python-dateutil python-drms python-glymur python-h5netcdf python-h5py python-hypothesis python-matplotlib python-mpl-animators python-numpy python-pandas python-pyerfa python-reproject python-scikit-image python-scipy ;; python-spiceypy ; Not packed yet in Guix, long jorney. python-tqdm python-zeep)) (home-page "https://sunpy.org") (synopsis "Python library for Solar Physics") (description "SunPy is package for solar physics and is meant to be a free alternative to the SolarSoft data analysis environment.") (license license:bsd-2))) (define-public python-sunpy-soar (package (name "python-sunpy-soar") (version "1.10") (source (origin (method url-fetch) (uri (pypi-uri "sunpy-soar" version)) (sha256 (base32 "0pb7dr06n20hdhlqf8npb4j1qb5034cgwqi3iciqdi1wxyy5pjc6")))) (build-system pyproject-build-system) (arguments (list #:test-flags ;; Disabe tests requireing network access. #~(list "-k" (string-append "not test_search" " and not test_search_low_latency" " and not test_insitu_search" " and not test_no_results" " and not test_no_instrument" " and not test_download_path" " and not test_search_soop" " and not test_when_soar_provider_passed" " and not test_when_sdac_provider_passed" " and not test_when_wrong_provider_passed")) #:phases #~(modify-phases %standard-phases (add-before 'check 'set-home-env (lambda _ ;; Tests require HOME to be set. ;; Permission denied: '/homeless-shelter' (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-sunpy)) (native-inputs (list python-pytest)) (home-page "https://docs.sunpy.org/projects/soar") (synopsis "Solar Orbiter Archive plugin for SunPy") (description "This package provides a @code{sunpy} FIDO plugin for accessing data in the @acronym{Solar Orbiter Archive, SOAR}.") (license license:bsd-2))) (define-public python-astral (package (name "python-astral") (version "3.2") (source (origin (method url-fetch) (uri (pypi-uri "astral" version)) (sha256 (base32 "121xag65rmv6pszbi3d206yz3jfwmpkf0jxjrxrd2scy5r0knz4v")))) (build-system pyproject-build-system) (arguments (list #:test-flags ;; XXX: Disable tests which require newer version of python-pytz. ;; No time zone found with key Pacific/Auckland #~(list "-k" (string-append "not test_TimezoneLookup" " and not test_Sun" " and not test_Dawn" " and not test_Sunrise" " and not test_SolarNoon" " and not test_Dusk" " and not test_Sunset" " and not test_SolarElevation" " and not test_SolarAzimuth" " and not test_TimeAtAltitude" " and not test_MoonNoDate" " and not test_lookup" " and not test_tzinfo" " and not test_australia" " and not test_adak" " and not test_australia" " and not test_Elevation_NonNaive" " and not test_Wellington" " and not test_Sun_Local_tzinfo" " and not test_Sun_Local_str" " and not test_SolarZenith_London" " and not test_SolarZenith_Riyadh" " and not test_moonrise_utc" " and not test_moonrise_wellington" " and not test_moonset_wellington")) #:phases #~(modify-phases %standard-phases (add-before 'check 'prepare-test-environment (lambda _ (setenv "HOME" "/tmp")))))) (native-inputs (list python-freezegun python-poetry-core python-pytest python-setuptools-scm)) (propagated-inputs (list python-dataclasses python-pytest python-pytz)) (home-page "https://github.com/sffjunkie/astral") (synopsis "Calculations for the position of the sun and moon") (description "Astral is a Python module that calculates times for various positions of the sun: dawn, sunrise, solar noon, sunset, dusk, solar elevation, solar azimuth, rahukaalam, and the phases of the moon.") (license license:asl2.0))) (define-public python-spectral-cube (package (name "python-spectral-cube") (version "0.6.5") (source (origin (method url-fetch) (uri (pypi-uri "spectral-cube" version)) (sha256 (base32 "0cqxgmk46gv2qa2kls8fph105lgwbwf13hvizh6w85mzgypyp740")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "-n" "auto"))) (propagated-inputs (list python-astropy ;; XXX: Currently failing in upstream as it's optional silent ;; until a new version is released, see: ;; <https://github.com/aplpy/aplpy/issues/492>. ;; ;; python-aplpy python-casa-formats-io python-dask python-distributed python-fsspec ;; python-glue-core ; Not packed http://glueviz.org/, optional. python-joblib python-matplotlib python-numpy python-radio-beam python-reproject python-scipy python-six ;; python-yt ; Not packed https://yt-project.org/, optional. python-zarr)) (native-inputs (list ;; XXX: Introduce cycle with pvextractor, listed as extra requiremnts ;; in [noviz] option. ;; python-pvextractor python-pytest-astropy python-pytest-xdist python-regions python-setuptools-scm)) (home-page "https://spectral-cube.readthedocs.io/en/latest/") (synopsis "Library for reading and analyzing astrophysical spectral data cubes") (description "The spectral-cube package provides an easy way to read, manipulate, analyze, and write data cubes with two positional dimensions and one spectral dimension, optionally with Stokes parameters. It provides the following main features: @itemize @item A uniform interface to spectral cubes, robust to the wide range of conventions of axis order, spatial projections, and spectral units that exist in the wild. @item Easy extraction of cube sub-regions using physical coordinates. @item Ability to easily create, combine, and apply masks to datasets. @item Basic summary statistic methods like moments and array aggregates. @item Designed to work with datasets too large to load into memory. @end itemize") (license license:bsd-3))) (define-public python-specutils (package (name "python-specutils") (version "1.16.0") (source (origin (method url-fetch) (uri (pypi-uri "specutils" version)) (sha256 (base32 "1bv1f0bpyc8pgxywcmhd3rpmnx0l604iqn4cx6isa9jfp6gnd0z3")))) (build-system pyproject-build-system) (arguments (list ;; Disabling test requiring access to download ;; <https://datacenter.iers.org/data/9/finals2000A.all>. ;; XXX: Check if test data may be packed as standalone package. #:test-flags #~(list "-k" "not test_create_spectral_axis") #:phases #~(modify-phases %standard-phases (add-before 'check 'set-home-env (lambda _ ;; Tests require HOME to be set. ;; Permission denied: '/homeless-shelter' (setenv "HOME" "/tmp")))))) (propagated-inputs (list ;; python-stdatamodels ; cycle with python-synphot, optional. python-asdf python-asdf-astropy python-gwcs python-ndcube python-numpy python-scipy)) (native-inputs (list python-matplotlib python-pytest-astropy python-setuptools-scm python-spectral-cube)) (home-page "https://specutils.readthedocs.io/") (synopsis "Package for spectroscopic astronomical data") (description "@code{specutils} is a Python package for representing, loading, manipulating, and analyzing astronomical spectroscopic data. The generic data containers and accompanying modules provide a toolbox that the astronomical community can use to build more domain-specific packages. For more details about the underlying principles, see @url{https://github.com/astropy/astropy-APEs/blob/main/APE13.rst, APE13}.") (license license:bsd-3))) (define-public python-spherical-geometry (package (name "python-spherical-geometry") (version "1.3.2") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/spacetelescope/spherical_geometry") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 "0znzfy3bmnsncvahf8qdav0c9403fn99d1gp25lainhv7kxfk44c")))) (build-system pyproject-build-system) (arguments (list ;; XXX: Disable one failing test ;; See https://github.com/spacetelescope/spherical_geometry/issues/252 #:test-flags #~(list "-k" "not test_overlap") #:phases #~(modify-phases %standard-phases (add-after 'unpack 'preparations (lambda _ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version) ;; Use our own libraries in place of bundles. (setenv "USE_SYSTEM_QD" "1"))) (add-before 'check 'prepare-test-environment (lambda _ (invoke "python" "setup.py" "build_ext" "--inplace") (call-with-output-file "pytest.ini" (lambda (port) (format port "[pytest] python_files = test_*.py")))))))) (native-inputs (list python-pytest python-pytest-astropy-header python-setuptools-scm)) (inputs (list qd)) (propagated-inputs (list python-astropy python-numpy)) (home-page "https://github.com/spacetelescope/spherical_geometry") (synopsis "Python astronimical package for handling spherical polygons") (description "The @code{spherical_geometry} library is a Python package for handling spherical polygons that represent arbitrary regions of the sky.") ;; LICENSE.rst Association of Universities for Research in Astronomy (AURA) ;; QD_LIBRARY_LICENSE.rst for bandeled QD source (license license:bsd-3))) (define-public python-statmorph (package (name "python-statmorph") (version "0.5.7") (source (origin (method url-fetch) (uri (pypi-uri "statmorph" version)) (sha256 (base32 "06rbwrqlvdzn9innx05kjjmm4mmacd8kwwsfdf5idbwzby5ny5lw")))) (build-system pyproject-build-system) (propagated-inputs (list python-astropy python-numpy python-photutils python-scikit-image python-scipy)) (native-inputs (list python-pytest)) (home-page "https://github.com/vrodgom/statmorph") (synopsis "Non-parametric morphological diagnostics of galaxy images") (description "The package @code{statmorph} implements functionality of calculating non-parametric morphological diagnostics of galaxy images (e.g., Gini-M_{20} and CAS statistics), as well as fitting 2D Sérsic profiles.") (license license:bsd-3))) (define-public python-stsci-image (package (name "python-stsci-image") (version "2.3.9") (source (origin (method url-fetch) (uri (pypi-uri "stsci_image" version)) (sha256 (base32 "0w7s93jsz61ccbhj7irl28q4jgiwa7y9k8pfj24q8vc9zvs530pj")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-before 'check 'build-extensions (lambda _ ;; Cython extensions have to be built before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-numpy python-scipy)) (native-inputs (list python-pytest python-setuptools-scm)) (home-page "https://github.com/spacetelescope/stsci.image") (synopsis "Image array manipulation functions") (description "This package provides a Python module to various @acronym{STScI, Space Telescope Science Institute} image array manipulation functions.") (license license:bsd-3))) (define-public python-stsci-imagestats (package (name "python-stsci-imagestats") (version "1.8.3") (source (origin (method url-fetch) (uri (pypi-uri "stsci.imagestats" version)) (sha256 (base32 "1nmya85bf2747c9ggya6my5b1slk6g2a7bk16rdv8r5a4ah9hda5")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-before 'check 'build-extensions (lambda _ ;; Cython extensions have to be built before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-numpy)) (native-inputs (list python-pytest python-setuptools-scm)) (home-page "https://stsciimagestats.readthedocs.io/en/latest/") (synopsis "Compute sigma-clipped statistics on data arrays") (description "@code{stsci.imagestats} is a package designed to compute various statistics on image data using sigma-clipping iterations. It is designed to replicate core behaviour of the IRAF's @url{http://stsdas.stsci.edu/cgi-bin/gethelp.cgi?imstatistics, imstatistics task}.") (license license:bsd-3))) (define-public python-stsci-stimage (package (name "python-stsci-stimage") ;; PyPI version was 0.2.8 but the latest version tag on GiHub was 0.2.7, ;; see <https://github.com/spacetelescope/stsci.stimage/issues/38> (version "0.2.9") (source (origin (method url-fetch) (uri (pypi-uri "stsci_stimage" version)) (sha256 (base32 "18sqmjiyn76hzkmv3g8549vfygi136gnar6pb0s7wb44j7cvc0in")))) (build-system pyproject-build-system) (arguments (list #:build-backend "setuptools.build_meta" #:test-flags #~(list "test_c") #:phases #~(modify-phases %standard-phases ;; Test steps are taken from GitHub Actions, see ;; <https://github.com/spacetelescope/stsci.stimage/issues/27> (add-before 'check 'waf-configure-build (lambda _ (copy-file (string-append #$(this-package-native-input "python-waf") "/bin/waf") "waf") (invoke "python" "waf" "configure" "build")))))) (propagated-inputs (list python-numpy)) (native-inputs (list python-pytest python-wheel python-setuptools-scm python-waf)) (home-page "https://stscistimage.readthedocs.io/en/latest/") (synopsis "STScI image processing") (description "This package provides an astronomical Python package with image processing functions: @code{xyxymatch}, @code{geomap}.") (license license:bsd-3))) (define-public python-stcal (package (name "python-stcal") (version "1.8.0") (source (origin (method url-fetch) (uri (pypi-uri "stcal" version)) (sha256 (base32 "0vcq1462wdfi96qqsd5bidx38bbpnpcm18j6s761jz8ymi6vifap")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "-k" (string-append ;; Tests requiring network access. "not test_absolute_align" " and not test_relative_align[True]" " and not test_relative_align[False]" " and not test_get_catalog" " and not test_create_catalog" " and not test_create_catalog_graceful_failure" " and not test_parse_refcat")) #:phases #~(modify-phases %standard-phases (add-after 'unpack 'patch-slope-fitter (lambda _ (substitute* "src/stcal/ramp_fitting/src/slope_fitter.c" ;; It's failing to build, it looks like Guix's NumPy does not ;; contain the variable: error: ‘NPY_NTYPES_LEGACY’ undeclared ;; (first use in this function) ((".*NPY_NTYPES_LEGACY.*") "")))) (add-before 'build 'silent-check-for-opencv (lambda _ ;; XXX: Can't detect opencv-python version. The input opencv ;; might not set the version correctly. (substitute* "pyproject.toml" ((".*opencv-python-headless.*") "")))) (add-before 'check 'build-extensions (lambda _ ;; Cython extensions have to be built before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list opencv ;Provides OpenCV-Python python-asdf python-astropy python-drizzle python-gwcs python-numpy python-requests python-scikit-image python-scipy python-tweakwcs)) (native-inputs (list python-cython-3 python-psutil python-pytest python-pytest-doctestplus python-setuptools-scm)) (home-page "https://github.com/spacetelescope/stcal") (synopsis "STScI tools and algorithms used in calibration pipelines") (description "STScI tools and algorithms used in calibration pipelines.") (license license:bsd-3))) (define-public python-stdatamodels (package (name "python-stdatamodels") (version "2.0.0") (source (origin (method url-fetch) (uri (pypi-uri "stdatamodels" version)) (sha256 (base32 "0a47xf1zv71kv166z6rd9v75bw0jjmg70180af4yi4v4y7gnxvmm")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "-n" "auto" ;; Disable tests requiring access to CRDS servers to download ;; ~500MiB of data. "-k" "not test_crds_selectors_vs_datamodel") #:phases #~(modify-phases %standard-phases (add-before 'check 'set-home (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-asdf python-asdf-astropy python-astropy python-numpy python-psutil)) (native-inputs (list python-crds python-pytest python-pytest-doctestplus python-pytest-xdist python-scipy python-setuptools-scm)) (home-page "https://github.com/spacetelescope/stdatamodels") (synopsis "Core support for DataModel classes used in calibration pipelines") (description "Provides @code{DataModel}, which is the base class for data models implemented in the @acronym{JWST, James Webb Space Telescope} and @acronym{Roman, Nancy Grace Roman Space Telescope} calibration software.") (license license:bsd-3))) (define-public python-stpipe (package (name "python-stpipe") (version "0.7.0") (source (origin (method url-fetch) (uri (pypi-uri "stpipe" version)) (sha256 (base32 "0kxm0vllyi3z149q3g3xpfl0c0wpviiyfh55rv0x6zvs0px6c81j")) (modules '((guix build utils))) (snippet '(begin ;; Replace reference to external configobj. (substitute* (find-files "." "\\.py$") (("from astropy.extern import configobj") "import configobj") (("from astropy.extern.configobj import validate") "import validate") (("from astropy.extern.configobj.configobj import ") "from configobj import ") (("from astropy.extern.configobj.validate import ") "from validate import ")))))) (build-system pyproject-build-system) (propagated-inputs (list python-asdf python-astropy python-crds python-stdatamodels)) (native-inputs (list ;; python-jwst ; cycle: python-stpipe -> python-jwst -> python-stpipe python-pytest python-pytest-doctestplus python-pytest-openfiles python-setuptools-scm)) (home-page "https://github.com/spacetelescope/stpipe") (synopsis "Framework for calibration pipeline software") (description "This package provides base classes and command-line tools for implementing calibration pipeline software.") ;; LICENSE Association of Universities for Research in Astronomy (AURA) (license license:bsd-3))) (define-public python-stsynphot (package (name "python-stsynphot") (version "1.3.0") (source (origin (method url-fetch) (uri (pypi-uri "stsynphot" version)) (sha256 (base32 "15m3vy39mc7rh1mrxs8d2bs0bx5vv632m6wg8n15fqjzhadqy7j5")))) (build-system pyproject-build-system) (arguments (list ;; XXX: Tests fails on missing file, it might need to be downloaded, ;; disable them for now. astropy.utils.exceptions.AstropyUserWarning: ;; Failed to load Vega spectrum from ;; /grp/redcat/trds/calspec/alpha_lyr_stis_010.fits; #:tests? #f)) (propagated-inputs (list python-astropy python-beautifulsoup4 python-matplotlib python-numpy python-scipy python-synphot)) (native-inputs (list python-pytest python-pytest-astropy python-pytest-astropy-header python-setuptools-scm)) (home-page "https://github.com/spacetelescope/stsynphot_refactor") (synopsis "Synthetic photometry using Astropy for HST and JWST") (description "This package provides a replacement for IRAF STSDAS SYNPHOT and ASTROLIB PYSYNPHOT, utilizing Astropy covering instrument specific portions of the old packages for HST.") (license license:bsd-3))) (define-public libnova (package (name "libnova") (version "0.16") (source (origin (method git-fetch) (uri (git-reference (url "https://git.code.sf.net/p/libnova/libnova.git") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "0icwylwkixihzni0kgl0j8dx3qhqvym6zv2hkw2dy6v9zvysrb1b")))) (build-system gnu-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-after 'unpack 'patch-git-version (lambda _ (substitute* "./git-version-gen" (("/bin/sh") (which "sh")))))))) (native-inputs (list autoconf automake libtool)) (synopsis "Celestial mechanics, astrometry and astrodynamics library") (description "Libnova is a general purpose, double precision, Celestial Mechanics, Astrometry and Astrodynamics library.") (home-page "https://libnova.sourceforge.net/") (license (list license:lgpl2.0+ license:gpl2+)))) ; examples/transforms.c & lntest/*.c (define-public libsep (package (name "libsep") (version "1.2.1") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/kbarbary/sep") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "0sag96am6r1ffh9860yq40js874362v3132ahlm6sq7padczkicf")))) (build-system cmake-build-system) (arguments (list #:make-flags #~(list (string-append "CC=" #$(cc-for-target)) (string-append "PREFIX=" #$output)) #:phases #~(modify-phases %standard-phases (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? (chdir "../source") (invoke "make" (string-append "CC=" #$(cc-for-target)) "test"))))))) (native-inputs (list python-wrapper)) (home-page "https://github.com/kbarbary/sep") (synopsis "Astronomical source extraction and photometry library") (description "SEP makes the core algorithms of @url{https://www.astromatic.net/software/sextractor/, sextractor} available as a library of stand-alone functions and classes. These operate directly on in-memory arrays (no FITS files or configuration files). The code is derived from the Source Extractor code base (written in C) and aims to produce results compatible with Source Extractor whenever possible. SEP consists of a C library with no dependencies outside the standard library, and a Python module that wraps the C library in a Pythonic API. The Python wrapper operates on NumPy arrays with NumPy as its only dependency.") (license (list license:expat license:lgpl3+ license:bsd-3)))) (define-public libskry (package (name "libskry") (version "0.3.0") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/GreatAttractor/libskry") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "14kwng0j8wqzlb0gqg3ayq36l15dpz7kvxc56fa47j55b376bwh6")))) (build-system gnu-build-system) (arguments `(#:make-flags (list (string-append "LIBAV_INCLUDE_PATH=" (assoc-ref %build-inputs "ffmpeg") "/include")) #:phases (modify-phases %standard-phases (delete 'configure) ;; no configure provided (delete 'check) ;; no tests provided (replace 'install ;; The Makefile lacks an ‘install’ target. (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (lib (string-append out "/lib")) (include (string-append out "/include"))) (copy-recursively "bin" lib) (copy-recursively "include" include)) #t))))) (inputs (list ffmpeg-4)) (home-page "https://github.com/GreatAttractor/libskry") (synopsis "Astronimical lucky imaging library") (description "@code{libskry} implements the lucky imaging principle of astronomical imaging: creating a high-quality still image out of a series of many thousands) low quality ones") (license license:gpl3+))) (define-public libpasastro (package (name "libpasastro") (version "1.4.2") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/pchev/libpasastro") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "1na3gyb3nzb5gdgccs1653j2gnz6w3v1mqzhyhkx3yqw8bs3q5x0")))) (build-system gnu-build-system) (arguments (list #:tests? #f ; no tests provided #:make-flags #~(list ;; Keep OS detection for the case when Hurd would be suitable to try. #$@(if (target-linux?) '("OS_TARGET=linux") '()) ;; Enable buildtime CPU detection where supported, ;; and set a suitable CPU target variable. #$@(match (or (%current-target-system) (%current-system)) ("i686-linux" '("CPU_TARGET=i386")) ("x86_64-linux" '("CPU_TARGET=x86_64")) ;; There is no a case for RISCV in upstream, attempt to treat it ;; as ARM. ((or "armhf-linux" "aarch64-linux" "riscv64") '("CPU_TARGET=armv7l")) (_ '())) (string-append "PREFIX=" #$output)) #:phases #~(modify-phases %standard-phases (delete 'configure)))) (home-page "https://github.com/pchev/libpasastro") (synopsis "Interface to astronomy library for use from Pascal program") (description "This package provides shared libraries to interface Pascal program with standard astronomy libraries: @itemize @item @code{libpasgetdss.so}: Interface with GetDSS to work with DSS images. @item @code{libpasplan404.so}: Interface with Plan404 to compute planets position. @item @code{libpaswcs.so}: Interface with libwcs to work with FITS WCS. @item @code{libpasspice.so}: To work with NAIF/SPICE kernel. @end itemize") (license license:gpl2+))) (define-public libxisf (package (name "libxisf") (version "0.2.12") (source (origin (method git-fetch) (uri (git-reference (url "https://gitea.nouspiro.space/nou/libXISF") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "1bvf3x0xdipkg28c75j6jav3b2llbqvfa6lkwiacxxlzmj0226s2")))) (build-system cmake-build-system) (arguments (list #:configure-flags #~(list "-DUSE_BUNDLED_LIBS=OFF"))) (native-inputs (list pkg-config)) (inputs (list lz4 pugixml zlib)) (home-page "https://nouspiro.space/?page_id=306") (synopsis "Astronomical library to load and write XISF file format") (description "LibXISF is C++ library that can read and write @acronym{XISF,Extensible Image Serialization Format} files produced by @url{https://pixinsight.com/, PixInsight}. It implements @url{https://pixinsight.com/doc/docs/XISF-1.0-spec/XISF-1.0-spec.html, XISF 1.0 specification}.") (license license:gpl3+))) (define-public missfits (package (name "missfits") (version "2.8.0") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/astromatic/missfits") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 "12ndvrr3l5j7ph2i5f3qf0wqmv5ymsyjzxnnypqajsvliw72iprh")))) (build-system gnu-build-system) (arguments (list #:configure-flags #~(list ;; Address this link error: ;; ld: ... multiple definition of ... first defined here "CPPFLAGS=-fcommon"))) (home-page "https://www.astromatic.net/software/missfits") (synopsis "FITS files Maintenance program") (description "MissFITS is a program that performs basic maintenance and packaging tasks on FITS files: @itemize @item add/edit FITS header keywords @item split/join @acronym{MEF, Multi-Extension-FITS} files @item unpack/pack FITS data-cubes @item create/check/update FITS checksums, using @uref{http://www.adass.org/adass/proceedings/adass94/seamanr.html, R. Seaman's protocol} @end itemize\n") (license license:gpl3+))) (define-public gpredict ;; The latest tag, 2.3, has no major difference with 2.2.1 and is dated for ;; 2018. Additionally, there is some activity on the master branch. (package (name "gpredict") (version "2.2.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/csete/gpredict/releases" "/download/v" version "/gpredict-" version ".tar.bz2")) (sha256 (base32 "0hwf97kng1zy8rxyglw04x89p0bg07zq30hgghm20yxiw2xc8ng7")))) (build-system gnu-build-system) (arguments (list #:configure-flags #~(list "CFLAGS=-O2 -g -fcommon") #:phases #~(modify-phases %standard-phases (add-after 'unpack 'fix-tests (lambda _ ;; Remove reference to non-existent file. (substitute* "po/POTFILES.in" (("src/gtk-sat-tree\\.c") ""))))))) (native-inputs (list gettext-minimal intltool pkg-config)) (inputs (list curl glib goocanvas gtk+)) (home-page "https://oz9aec.dk/gpredict/") (synopsis "Satellite tracking and orbit prediction application") (description "Gpredict is a real-time satellite tracking and orbit prediction application. It can track a large number of satellites and display their position and other data in lists, tables, maps, and polar plots (radar view). Gpredict can also predict the time of future passes for a satellite, and provide you with detailed information about each pass. Some core features of Gpredict include: @itemize @item Tracking of a large number of satellites only limited by the physical memory and processing power of the computer @item Display the tracking data in lists, maps, polar plots and any combination of these @item Have many modules open at the same either in a notebook or in their own windows. The modules can also run in full-screen mode @item You can use many ground stations @item Predict upcoming passes @item Gpredict can run in real-time, simulated real-time (fast forward and backward), and manual time control @item Detailed information both the real time and non-real time modes @item Doppler tuning of radios via Hamlib rigctld @item Antenna rotator control via Hamlib rotctld @end itemize") (license license:gpl2+))) (define-public scamp (package (name "scamp") (version "2.10.0") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/astromatic/scamp") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "0qic52mzw9avf1a1fsr85mlh63b7hq6d4wj2d00zgdllmclj5l9q")))) (build-system gnu-build-system) (arguments (list #:configure-flags #~(list "CPPFLAGS=-fcommon" "--enable-openblas" "--enable-plplot" (string-append "--with-curl-incdir=" #$(this-package-input "curl") "/include") (string-append "--with-curl-libdir=" #$(this-package-input "curl") "/lib") (string-append "--with-fftw-incdir=" #$(this-package-input "fftwf") "/include") (string-append "--with-fftw-libdir=" #$(this-package-input "fftwf") "/lib") (string-append "--with-openblas-incdir=" #$(this-package-input "openblas") "/include") (string-append "--with-openblas-libdir=" #$(this-package-input "openblas") "/lib") (string-append "--with-plplot-incdir=" #$(this-package-input "plplot") "/include") (string-append "--with-plplot-libdir=" #$(this-package-input "plplot") "/lib")))) (native-inputs (list autoconf automake libtool pkg-config python-astropy python-numpy python-wrapper)) (inputs (list curl fftwf openblas plplot)) (home-page "https://www.astromatic.net/software/scamp/") (synopsis "Compute astrometric solutions") (description "@acronym{Software for Calibrating AstroMetry and Photometry,SCAMP} is a software that computes astrometric projection parameters from source catalogues derived from @url{http://fits.gsfc.nasa.gov/,FITS} images. The computed solution is expressed according to the @url{http://www.atnf.csiro.au/people/mcalabre/WCS/index.html,WCS} standard. The main features of SCAMP are: @itemize @item compatibility with @code{SExtractor} FITS or Multi-Extension FITS catalogue format in input @item generation of WCS-compliant and @code{SWarp}-compatible FITS image headers in output @item automatic grouping of catalogues on the sky @item selectable on-line astrometric reference catalogue @item automatic determination of scale, position angle, flipping and coordinate shift using fast pattern-matching @item various astrometric calibration modes for single detectors and detector arrays @item combined astrometric solutions for multi-channel/instrument surveys @item highly configurable astrometric distortion polynomials @item correction for differential chromatic refraction @item proper motion measurements @item multi-threaded code that takes advantage of multiple processors @item @url{http://www.ivoa.net/documents/VOTable,VOTable}-compliant XML output of meta-data @item @url{http://en.wikipedia.org/wiki/XSLT,XSLT} filter sheet provided for convenient access to metadata from a regular web browser @end itemize") (license license:gpl3+))) (define-public sgp4 ;; Version tag v1.0 is dated to <2021-01-11>, use the lates commit instead. (let ((commit "6a448b4850e5fbf8c1ca03bb5f6013a9fdc1fd91") (revision "2")) (package (name "sgp4") (version (git-version "1.0" revision commit)) (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/dnwrnr/sgp4") (commit commit))) (file-name (git-file-name name version)) (sha256 (base32 "15q8sain87cbppmzq66y6gp6bvm3kdd1bcchrl59rcvjp0w51wl1")))) (build-system cmake-build-system) (arguments (list ;; FIXME: Tests evaluated via runtest binary, but it's failing even ;; when SGP4-VER.TLE file was copied next to it during install phase. ;; ;; There are 2 more binaries are created after build phase - ;; passpredict and sattrack which are failing to execute after ;; install, strace output: ;; ;; strace: exec: Exec format error ;; #:tests? #f)) (home-page "https://github.com/dnwrnr/sgp4") (synopsis "Simplified perturbations models library") (description "This is a library implementing the simplified perturbations model. It can be used to calculate the trajectory of satellites.") (license license:asl2.0)))) (define-public imppg (package (name "imppg") (version "0.6.5") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/GreatAttractor/imppg") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "0a6wb1a9adwd01dmy0r03xxp8iz9y7mvh30088ajilhj4lf90vxa")))) (build-system cmake-build-system) (arguments (list ;; No test provided #:tests? #f)) (native-inputs (list boost pkg-config)) (inputs (list cfitsio freeimage glew wxwidgets-3.0)) (home-page "https://github.com/GreatAttractor/imppg") (synopsis "Astronomical Image Post-Proccessor (ImPPG)") (description "ImPPG performs Lucy-Richardson deconvolution, unsharp masking, brightness normalization and tone curve adjustment. It can also apply previously specified processing settings to multiple images. All operations are performed using 32-bit floating-point arithmetic. Supported input formats: FITS, BMP, JPEG, PNG, TIFF (most of bit depths and compression methods), TGA and more. Images are processed in grayscale and can be saved as: BMP 8-bit; PNG 8-bit; TIFF 8-bit, 16-bit, 32-bit floating-point (no compression, LZW- or ZIP-compressed), FITS 8-bit, 16-bit, 32-bit floating-point.") (license license:gpl3+))) (define-public indi-2.0 (package (name "indi") (version "2.0.9") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/indilib/indi") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "08wmw7mrxx1zc89yka3c52djmpvlb8zimq8yzs95gh3p7r5jfpq9")))) (build-system cmake-build-system) (arguments (list #:parallel-tests? #f ; Socket address collisions between tests #:configure-flags #~(list "-DINDI_BUILD_UNITTESTS=ON" "-DINDI_BUILD_INTEGTESTS=ON" "-DCMAKE_INSTALL_LIBDIR=lib" (string-append "-DCMAKE_INSTALL_PREFIX=" #$output) (string-append "-DUDEVRULES_INSTALL_DIR=" #$output "/lib/udev/rules.d")) #:phases #~(modify-phases %standard-phases (add-after 'unpack 'patch-udev-rules (lambda _ (substitute* (list "drivers/auxiliary/99-indi_auxiliary.rules" "drivers/video/80-dbk21-camera.rules") (("/bin/sh") (which "sh")) (("/sbin/modprobe") (string-append #$(this-package-input "kmod") "/bin/modprobe"))))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? (with-directory-excursion "integs" (invoke "ctest" "-V" "--output-on-failure")) (with-directory-excursion "test" (invoke "ctest" "-V")))))))) (native-inputs (list googletest)) (inputs (list cfitsio curl fftw gsl kmod libev libjpeg-turbo libnova libtiff libusb zlib)) (home-page "https://www.indilib.org") (synopsis "Library for astronimical intrumentation control") (description "INDI (Instrument-Neutral Device Interface) is a distributed XML-based control protocol designed to operate astronomical instrumentation. INDI is small, flexible, easy to parse, scalable, and stateless. It supports common DCS functions such as remote control, data acquisition, monitoring, and a lot more.") (license (list license:bsd-3 license:gpl2+ license:lgpl2.0+ license:lgpl2.1+)))) (define-public indi-1.9 (package (inherit indi-2.0) (version "1.9.9") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/indilib/indi") (commit (string-append "v" version)))) (file-name (git-file-name "indi" version)) (sha256 (base32 "1vfcas59nlw8v7n6qhxhcm4isf5wk0crip5rmsallq3bsv3zznfr")))))) (define-public indi ;; Default version of INDI.. indi-1.9) (define-public python-jplephem (package (name "python-jplephem") (version "2.22") (source (origin (method url-fetch) (uri (pypi-uri "jplephem" version)) (sha256 (base32 "0b2rgb7pvwnl72pqjryf9c812mmdxr69fwiym7mnz05l2xrcr6hd")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? (invoke "python" "-m" "unittest" "discover" "-s" "test"))))))) (inputs (list python-numpy)) (home-page "https://github.com/brandon-rhodes/python-jplephem") (synopsis "Python version of NASA DE4xx ephemerides") (description "@code{skyfield} computes positions for the stars, planets, and satellites in orbit around the Earth. Its results should agree with the positions generated by the United States Naval Observatory and their Astronomical Almanac to within 0.0005 arcseconds (half a @emph{mas} or milliarcsecond).") (license license:expat))) (define-public python-jwst (package (name "python-jwst") (version "1.15.1") (source (origin (method url-fetch) (uri (pypi-uri "jwst" version)) (sha256 (base32 "1nl5fixakqvjhg9q5biivwaqpi6lzx9w4fq0n6imwccag2gv1va3")) (modules '((guix build utils))) (snippet '(begin ;; Replace reference to external configobj. (substitute* (find-files "." "\\.py$") (("from astropy.extern import configobj") "import configobj") (("from astropy.extern.configobj import validate") "import validate") (("from astropy.extern.configobj.configobj import ") "from configobj import ") (("from astropy.extern.configobj.validate import ") "from validate import ")))))) (build-system pyproject-build-system) (arguments (list ;; XXX: Tests require access to https://jwst-crds-pub.stsci.edu server for ;; getting data sets. #:tests? #f #:phases #~(modify-phases %standard-phases ;; NOTE: (Sharlatan-20230529T113448+0100): opencv-python's ;; version can't be detected, it could the way it's packed in ;; Guix. Review failing sanity check with more efforts, ;; disable for now to make package buildable. (delete 'sanity-check)))) ;; opencv provides OpenCV-Python which is Listed as install requirement. (propagated-inputs (list opencv python-asdf python-asdf-astropy python-astropy python-bayesicfitting python-crds python-drizzle python-gwcs python-importlib-metadata python-jplephem python-jsonschema python-numpy python-packaging python-photutils python-poppy python-psutil python-pyparsing python-pysiaf python-requests python-scikit-image python-scipy python-spherical-geometry python-stcal python-stdatamodels python-stpipe python-stsci-image python-stsci-imagestats python-synphot python-tweakwcs python-wiimatch)) (native-inputs (list python-colorama python-pytest python-pytest-cov python-pytest-doctestplus python-pytest-openfiles python-requests-mock ;; python-ruff ; not packed yet in Guix python-setuptools-scm)) (home-page "https://jwst-pipeline.readthedocs.io/en/latest/") (synopsis "Python library for science observations from the James Webb Space Telescope") (description "This package provides an access to the JWST Science Calibration Pipeline processes data from all JWST instruments and observing modes by applying various science corrections sequentially, producing both fully-calibrated individual exposures and high-level data products (mosaics, extracted spectra, etc.).") (license license:bsd-3))) (define-public python-jwst-reffiles (package (name "python-jwst-reffiles") (version "1.0.1") (source (origin (method url-fetch) (uri (pypi-uri "jwst_reffiles" version)) (sha256 (base32 "1dlw955cw49qczdmimglmlcbal8vd3wbv5j48ckllvjgd59pwr3s")))) (build-system pyproject-build-system) (arguments (list ;; FIXME: Invistigate why it failes on python-jwst side where the ;; python-tweakwcs is built just fine: ;; ;; <...>/tweakwcs/matchutils.py:18: in <module> ;; from stsci.stimage import xyxymatch ;; E ModuleNotFoundError: No module named 'stsci.stimage' #:tests? #f #:phases #~(modify-phases %standard-phases (delete 'sanity-check)))) (propagated-inputs (list python-astropy python-jwst python-matplotlib python-numpy python-scipy)) (native-inputs (list python-pytest python-stsci-stimage)) (home-page "https://github.com/spacetelescope/jwst_reffiles") (synopsis "Tool for JWST's CRDS-formatted reference files creation") (description "This package provides a tool to create @acronym{Calibration References Data System,CRDS}-formatted reference files for @acronym{James Webb Space Telescope,JWST} from a set of input dark current files and a set of flat field files.") (license license:bsd-3))) (define-public python-pyerfa (package (name "python-pyerfa") (version "2.0.1.4") (source (origin (method url-fetch) (uri (pypi-uri "pyerfa" version)) (sha256 (base32 "1lwx4hril705r2iz4pirgn0wrpv1wk20mr669g03bsij69qsdf5c")) (modules '((guix build utils))) (snippet #~(begin ;; Remove bundled submodule library. (delete-file-recursively "liberfa"))))) (build-system pyproject-build-system) (arguments (list ;; Disable only one failing test: ;; AttributeError: __warningregistry__ ;; See https://github.com/liberfa/pyerfa/issues/126 #:test-flags #~(list "-k" "not test_errwarn_reporting") #:phases #~(modify-phases %standard-phases (add-before 'build 'use-system-liberfa (lambda _ (setenv "PYERFA_USE_SYSTEM_LIBERFA" "1"))) (add-before 'check 'build-extensions (lambda _ (invoke "python" "setup.py" "build_ext" "--inplace")))))) (native-inputs (list python-pytest-doctestplus python-pytest python-setuptools-scm)) (inputs (list erfa)) (propagated-inputs (list python-numpy)) (home-page "https://github.com/liberfa/pyerfa") (synopsis "Python bindings for ERFA") (description "PyERFA is the Python wrapper for the ERFA library (Essential Routines for Fundamental Astronomy), a C library containing key algorithms for astronomy, which is based on the SOFA library published by the International Astronomical Union (IAU). All C routines are wrapped as Numpy universal functions, so that they can be called with scalar or array inputs.") (license license:bsd-3))) (define-public python-pynbody (package (name "python-pynbody") (version "1.6.0") (source (origin (method git-fetch) ;PyPi doesn't have not prebuit version. (uri (git-reference (url "https://github.com/pynbody/pynbody") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "00isg6nsqzgjqpkczwvrcmj3ndzav3bfzla0a72b44cgdj20wyv8")) (modules '((guix build utils))) (snippet ;; Symlink goes to not existing directory. #~(for-each delete-file '("docs/testdata" "docs/tutorials/example_code/testdata"))))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list ;; Disable tests which need to download additional ;; 1.0GiB+ of test data archive from ;; http://star.ucl.ac.uk/~app/testdata.tar.gz ;; https://github.com/pynbody/pynbody/blob/ \ ;; f4bd482dc47532831b3ec115c7cb07149d61bfc5/ \ ;; .github/workflows/build-test.yaml#L41 ;; See <https://github.com/pynbody/pynbody/issues/778> "--ignore=tests/copy_on_access_test.py" "--ignore=tests/gravity_test.py" "--ignore=tests/adaptahop_test.py" "--ignore=tests/ahf_halos_test.py" "--ignore=tests/array_test.py" "--ignore=tests/bridge_test.py" "--ignore=tests/family_test.py" "--ignore=tests/partial_tipsy_test.py" "--ignore=tests/snapshot_test.py" "--ignore=tests/test_profile.py" "--ignore=tests/gadget_test.py" "--ignore=tests/gadgethdf_test.py" "--ignore=tests/grafic_test.py" "--ignore=tests/halotools_test.py" "--ignore=tests/nchilada_test.py" "--ignore=tests/ramses_new_ptcl_format_test.py" "--ignore=tests/ramses_test.py" "--ignore=tests/rockstar_test.py" "--ignore=tests/sph_image_test.py" "--ignore=tests/sph_smooth_test.py" "--ignore=tests/subfind_test.py" "--ignore=tests/subfindhdf_gadget4_test.py" "--ignore=tests/tipsy_test.py" "-k" (string-append "not test_div_curl_smoothing" " and not test_float_kd" " and not test_kd_delete" " and not test_kd_issue_88" " and not test_kdtree_from_existing_kdtree" " and not test_kdtree_shared_mem" " and not test_neighbour_list" " and not test_particles_in_sphere" " and not test_periodic_smoothing" " and not test_smooth" " and not test_smooth_WendlandC2")) #:phases #~(modify-phases %standard-phases (add-before 'build 'set-compiler (lambda _ (setenv "CC" #$(cc-for-target))))))) (native-inputs (list python-cython python-pandas python-pytest)) (propagated-inputs (list python-h5py python-matplotlib python-numpy python-posix-ipc python-scipy)) (home-page "https://pynbody.github.io/pynbody/index.html") (synopsis "Light-weight astronomical N-body/SPH analysis for python") (description "@code{Pynbody} is an analysis framework for N-body and hydrodynamic astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo, N-Chilada and RAMSES AMR outputs.") (license license:gpl3+))) (define-public python-pyregion (package (name "python-pyregion") (version "2.2.0") (source (origin (method url-fetch) (uri (pypi-uri "pyregion" version)) (sha256 (base32 "0l7qb7r8fnv46mdih4m5b8jaxixgpw6m7v37dpikjkblgh0vigaw")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-before 'check 'build-extensions (lambda _ ;; Cython extensions have to be built before running the tests. (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-astropy python-numpy python-pyparsing)) (native-inputs (list python-cython python-pytest python-pytest-astropy-header python-setuptools-scm)) (home-page "https://github.com/astropy/pyregion") (synopsis "Python parser for ds9 region files") (description "@code{pyregion} is a python module to parse ds9 region files. It also supports ciao region files. Features: @itemize @item ds9 and ciao region files. @item (physical, WCS) coordinate conversion to the image coordinate. @item convert regions to matplotlib patches. @item convert regions to spatial filter (i.e., generate mask images) @end itemize") (license license:expat))) (define-public python-pysiaf (package (name "python-pysiaf") (version "0.22.0") (source (origin (method url-fetch) (uri (pypi-uri "pysiaf" version)) (sha256 (base32 "08wb98k9k4f04455da5ns9rif8pl9r3ih537w1yj393hkjjiyzfz")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "-n" "auto" ;; Disable 2 failing tests, see ;; <https://github.com/spacetelescope/pysiaf/issues/338> "-k" (string-append "not test_write_jwst_siaf_xlsx" " and not test_write_jwst_siaf_xml" )))) (propagated-inputs (list python-astropy python-lxml python-matplotlib python-numpy python-numpydoc python-openpyxl python-requests python-scipy)) (native-inputs (list python-pytest python-pytest-xdist)) (home-page "https://pysiaf.readthedocs.io/") (synopsis "Handling SIAF for space telescopes") (description "@code{pysiaf} is a python package to access, interpret, maintain, and generate @acronym{Handling of Science Instrument Aperture Files, SIAF}, in particular for JWST. Tools for applying the frame transformations, plotting, comparison, and validation are provided.") (license license:bsd-3))) (define-public python-pysynphot ;; XXX: 2.0.0 was released in 2021 there are a lot of changes since that ;; time and it failed to build with python-astropy 6.0.0, use the latest ;; upstream commit for now. (let ((commit "54e9e2a624910c4d177ca70f8e9fb8110c8fae5b") (revision "0")) (package (name "python-pysynphot") (version (git-version "2.0.0" revision commit)) (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/spacetelescope/pysynphot") (commit commit))) (file-name (git-file-name name version)) (sha256 (base32 "09sivpfqilk86zp8k5wmrs4g48m4kypn34jcy95y5h4ygbn5zbzy")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-before 'build 'set-version (lambda _ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "2.0.0"))) (add-before 'check 'set-env-data-path (lambda _ (setenv "PYSYN_CDBS" (string-append #$output "/crds"))))))) (native-inputs (list python-pytest python-pytest-remotedata python-setuptools-scm)) (propagated-inputs (list python-astropy python-beautifulsoup4 python-numpy python-pytest-astropy-header python-six)) (home-page "https://github.com/spacetelescope/pysynphot") (synopsis "Python Synthetic Photometry Utilities") (description "Astrolib PySynphot (hereafter referred to only as pysynphot) is an object-oriented replacement for STSDAS SYNPHOT synthetic photometry package in IRAF. @code{pysynphot} simulates photometric data and spectra as they are observed with the Hubble Space Telescope (HST). Passbands for standard photometric systems are available, and users can incorporate their own filters, spectra, and data.") (license license:bsd-3)))) (define-public python-sbpy (package (name "python-sbpy") (version "0.4.0") (source (origin (method url-fetch) (uri (pypi-uri "sbpy" version)) (sha256 (base32 "18f3056fgzpvjj43m845wl9znl4dqxs8f8qv3gpay7kik4l8a1fc")))) (build-system pyproject-build-system) (arguments (list #:test-flags ;; See <https://github.com/NASA-Planetary-Science/sbpy/issues/397>. #~(list "--ignore=sbpy/spectroscopy/tests/test_specgrad.py" ;; See <https://github.com/NASA-Planetary-Science/sbpy/issues/398> "-k" (string-append "not test_from_fluxd" " and not test_bandpass" " and not test_spectral_density_vega_bp")) #:phases #~(modify-phases %standard-phases (add-before 'check 'set-home-env (lambda _ ;; Tests require HOME to be set. ;; No such file or directory: '/homeless-shelter/.astropy' (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-ads python-astropy python-astroquery python-ginga python-numpy python-photutils python-pyyaml python-scipy python-synphot)) (native-inputs (list python-pytest python-pytest-astropy python-pytest-doctestplus python-pytest-remotedata python-pytest-xdist python-setuptools-scm)) (home-page "https://sbpy.org") (synopsis "Python module for small-body planetary astronomy") (description "@code{sbpy} is a package for small-body planetary astronomy. It is meant to supplement functionality provided by @code{astropy} with functions and methods that are frequently used in the context of planetary astronomy with a clear focus on asteroids and comets. Features: @itemize @item observation planning tools tailored to moving objects @item photometry models for resolved and unresolved observations @item wrappers and tools for astrometry and orbit fitting @item spectroscopy analysis tools and models for reflected solar light and emission from gas @item cometary gas and dust coma simulation and analysis tools @item asteroid thermal models for flux estimation and size/albedo estimation @item image enhancement tools for comet comae and PSF subtraction tools @item lightcurve and shape analysis tools @item access tools for various databases for orbital and physical data, as well as ephemerides services @end itemize") (license license:bsd-3))) (define-public python-sep (package/inherit libsep (name "python-sep") (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "test.py"))) (native-inputs (list python-cython python-pytest)) (propagated-inputs (list python-numpy)) (synopsis "Python library for Source Extraction and Photometry"))) (define-public python-suntime (package (name "python-suntime") (version "1.3.2") (source (origin (method url-fetch) (uri (pypi-uri "suntime" version)) (sha256 (base32 "1kyd1r6zcs0jmh5gq74adrnb1h7dfr1mzjq4k4vbngfiga8gfd28")))) (build-system pyproject-build-system) (propagated-inputs (list python-dateutil)) (home-page "https://github.com/SatAgro/suntime") (synopsis "Sunset and sunrise time calculation python library") (description "Python library doing sunrise and sunset time calculation. Takes a WGS84 (GPS) latitude/longitude as input as well as an UTC or local datetime object.") (license license:lgpl3+))) (define-public python-synphot (package (name "python-synphot") (version "1.4.0") (source (origin (method url-fetch) (uri (pypi-uri "synphot" version)) (sha256 (base32 "0fk860bxaqbamrq15pkqlbvhbf70y50cra2mgvv9r0cxq37isbi6")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (replace 'check (lambda* (#:key tests? test-flags #:allow-other-keys) (when tests? (invoke "python" "setup.py" "build_ext" "--inplace") ;; Step out of the source directory to avoid interference; we ;; want to run the installed code with extensions etc. (with-directory-excursion "/tmp" (apply invoke "pytest" "-v" test-flags)))))))) (propagated-inputs (list python-astropy python-dust-extinction python-numpy python-scipy python-specutils )) (native-inputs (list python-pytest python-pytest-astropy python-setuptools-scm)) (home-page "https://github.com/spacetelescope/synphot_refactor") (synopsis "Synthetic photometry using Astropy") (description "This package provides a replacement for IRAF STSDAS SYNPHOT and ASTROLIB PYSYNPHOT, utilizing Astropy and covering the non-instrument specific portions of the old packages.") (license license:bsd-3))) (define-public python-asdf-compression ;; TODO: No release, change to tag when it's ready. (let ((commit "57cc7e76fb4163be3e99fb740b36b5ec5ae96e49") (revision "0")) (package (name "python-asdf-compression") (version (git-version "0.0.1" revision commit)) (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/asdf-format/asdf-compression") (commit commit))) (file-name (git-file-name name version)) (sha256 (base32 "1g6iiyls950k66dmd0pbqqdvz74kksc4j191n0ik6fhjnkiwifgs")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-before 'build 'set-version (lambda _ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1")))))) (native-inputs (list python-numpy python-pytest python-setuptools-scm)) (propagated-inputs (list python-asdf python-blosc python-lz4 python-zstandard)) (home-page "https://github.com/asdf-format/asdf-fits-schemas") (synopsis "ASDF extension to support various compression algorithms") (description "This package includes a plugin for the Python library ASDF to add support for reading and writing various compression algorithms including: @url{https://www.blosc.org/python-blosc/reference.html,Blosc}, @url{https://python-lz4.readthedocs.io/en/stable/lz4.frame.html,LZ4 Frame}, @url{http://facebook.github.io/zstd/,Zstandard}.") (license license:bsd-3)))) (define-public python-asdf-standard (package (name "python-asdf-standard") (version "1.1.1") (source (origin (method url-fetch) (uri (pypi-uri "asdf_standard" version)) (sha256 (base32 "00k1fzc8y8j0ar1chq0nqyfw8bgkkjgrkm32ibn0kz2vn715nlq1")))) (build-system pyproject-build-system) (arguments (list #:test-flags ;; Remove tests requiring python-asdf where python-asdf requires ;; python-asdf-standard, break circular dependencies. #~(list "--ignore=tests/test_asdf_schema.py" "--ignore=tests/test_integration.py" "--ignore=tests/test_manifests.py" "--ignore=tests/test_yaml_schema.py"))) (native-inputs (list python-astropy python-jsonschema python-pypa-build python-pytest python-packaging python-setuptools-scm)) (propagated-inputs (list python-importlib-resources)) (home-page "https://asdf-standard.readthedocs.io/") (synopsis "ASDF standard schemas") (description "This package provides Python implementation of @acronym{ASDF, Advanced Scientific Data Format} - a proposed next generation interchange format for scientific data. ASDF aims to exist in the same middle ground that made FITS so successful, by being a hybrid text and binary format: containing human editable metadata for interchange, and raw binary data that is fast to load and use. Unlike FITS, the metadata is highly structured and is designed up-front for extensibility.") (license license:bsd-3))) (define python-asdf-transform-schemas (package (name "python-asdf-transform-schemas") (version "0.5.0") (source (origin (method url-fetch) (uri (pypi-uri "asdf_transform_schemas" version)) (sha256 (base32 "0as6dcf9dmxjh24gwdmqwbbrk56fhgsmzwi7af4llwvm4mw4rkw2")))) (build-system pyproject-build-system) (arguments ;; Dependency cycle with python-asdf (list #:tests? #f)) (native-inputs (list python-setuptools-scm)) (propagated-inputs (list python-asdf-standard python-importlib-resources)) (home-page "https://github.com/asdf-format/asdf-transform-schemas") (synopsis "ASDF schemas for transforms") (description "This package provides ASDF schemas for validating transform tags. Users should not need to install this directly; instead, install an implementation package such as asdf-astropy.") (license license:bsd-3))) (define python-asdf-coordinates-schemas (package (name "python-asdf-coordinates-schemas") (version "0.3.0") (source (origin (method url-fetch) (uri (pypi-uri "asdf_coordinates_schemas" version)) (sha256 (base32 "0kk0rlzv0kkcw6fiwvps4n0x05867xc9hxyyzica31zcvhan12y9")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "-n" "auto"))) (native-inputs (list python-pytest python-pytest-xdist python-setuptools-scm)) (propagated-inputs (list python-asdf)) (home-page "https://github.com/asdf-format/asdf-coordinates-schemas") (synopsis "ASDF coordinates schemas") (description "This package provides ASDF schemas for validating coordinates tags. Users should not need to install this directly; instead, install an implementation package such as asdf-astropy.") (license license:bsd-3))) (define python-asdf-fits-schemas ;; TODO: No release, change to tag when it's ready. (let ((commit "d1b5e7a12a49fe61d43855045bab106be34cd252") (revision "1")) (package (name "python-asdf-fits-schemas") (version (git-version "0.0.1" revision commit)) (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/asdf-format/asdf-fits-schemas") (commit commit))) (file-name (git-file-name name version)) (sha256 (base32 "1h2xbk9c9l2959i3sdnwviv3z0hp1f0lba2vz9hpzgcm46qadqp8")))) (build-system pyproject-build-system) (arguments (list ;; Dependency cycle with python-asdf #:tests? #f #:phases #~(modify-phases %standard-phases (add-before 'build 'set-version (lambda _ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1")))))) (native-inputs (list python-setuptools-scm)) (propagated-inputs (list python-asdf-standard python-importlib-resources)) (home-page "https://github.com/asdf-format/asdf-fits-schemas") (synopsis "ASDF schemas to support the FITS format") (description "This package provides ASDF schemas for validating FITS tags.") (license license:bsd-3)))) (define python-asdf-time-schemas ;; TODO: No release, change to tag when it's ready. (let ((commit "a3062066ee70f1b934f7339d1ce96a5c5f61f055") (revision "3")) (package (name "python-asdf-time-schemas") (version (git-version "0.0.1" revision commit)) (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/asdf-format/asdf-time-schemas") (commit commit))) (file-name (git-file-name name version)) (sha256 (base32 "1i8lm2d18r6fadsch52dxc2zp1swkfa8w40s03albn7p290n4a97")))) (build-system pyproject-build-system) (arguments (list ;; Dependency cycle with python-asdf #:tests? #f #:phases #~(modify-phases %standard-phases (add-before 'build 'set-version (lambda _ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1")))))) (native-inputs (list python-setuptools-scm)) (propagated-inputs (list python-asdf-standard python-asdf-unit-schemas python-importlib-resources)) (home-page "https://github.com/asdf-format/asdf-fits-schemas") (synopsis "Schemas for storing time in ASDF") (description "This package provides ASDF schemas for validating time tags.") (license license:bsd-3)))) (define python-asdf-unit-schemas (package (name "python-asdf-unit-schemas") (version "0.2.0") (source (origin (method url-fetch) (uri (pypi-uri "asdf_unit_schemas" version)) (sha256 (base32 "0h24gvm1wip4gh3fw5ki8kwnvcy8gw6b6pajw3i1zvriamdw95fr")))) (build-system pyproject-build-system) (arguments ;; Dependency cycle with python-asdf (list #:tests? #f)) (native-inputs (list python-setuptools-scm)) (propagated-inputs (list python-asdf-standard python-importlib-resources)) (home-page "https://asdf-unit-schemas.readthedocs.io/") (synopsis "ASDF serialization schemas for the units defined by @code{astropy.units}") (description "This package provides ASDF schemas for validating unit tags.") (license license:bsd-3))) (define-public python-asdf-zarr (package (name "python-asdf-zarr") (version "0.0.4") (source (origin (method url-fetch) (uri (pypi-uri "asdf_zarr" version)) (sha256 (base32 "0xddz4hnsypyvqxhi43alaqh2vl1ripcl4p63qn6dk2v90lra8c0")))) (build-system pyproject-build-system) (propagated-inputs (list python-asdf python-fsspec python-zarr)) (native-inputs (list python-pytest python-setuptools-scm)) (home-page "https://github.com/asdf-format/asdf-zarr") (synopsis "Asdf extension to support Zarr arrays") (description "This package includes an extension for the Python library asdf to add support for reading and writing chunked @url{https://zarr.readthedocs.io/en/stable/,Zarr} arrays, a file storage format for chunked, compressed, N-dimensional arrays based on an open-source specification.") (license license:bsd-3))) (define python-asdf-wcs-schemas (package (name "python-asdf-wcs-schemas") (version "0.4.0") (source (origin (method url-fetch) (uri (pypi-uri "asdf_wcs_schemas" version)) (sha256 (base32 "1d08ng890xc1ilf3y1hrimx09x990wvg9g18n0ijwvpilnw49fy0")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "tests"))) (native-inputs (list python-asdf python-pytest python-pytest-openfiles python-setuptools-scm)) (propagated-inputs (list python-asdf-coordinates-schemas python-asdf-standard python-asdf-transform-schemas)) (home-page "https://github.com/asdf-format/asdf-wcs-schemas") (synopsis "ASDF WCS Schemas") (description "This package provides ASDF schemas for validating World Coordinate System (WCS) tags. Users should not need to install this directly; instead, install an implementation package such as gwcs.") (license license:bsd-3))) (define-public python-gwcs (package (name "python-gwcs") (version "0.21.0") (source (origin (method url-fetch) (uri (pypi-uri "gwcs" version)) (sha256 (base32 "1fn5l4v236bl7xqi1is40c2q57dji8by98iwqcndfnmjwqf7zllc")))) (build-system pyproject-build-system) (native-inputs (list python-jsonschema python-jmespath python-pytest python-pytest-doctestplus python-pyyaml python-setuptools-scm)) (propagated-inputs (list python-asdf python-asdf-astropy python-asdf-wcs-schemas python-astropy python-numpy python-scipy)) (home-page "https://gwcs.readthedocs.io/en/latest/") (synopsis "Generalized World Coordinate System") (description "Generalized World Coordinate System (GWCS) is an Astropy affiliated package providing tools for managing the World Coordinate System of astronomical data. GWCS takes a general approach to the problem of expressing transformations between pixel and world coordinates. It supports a data model which includes the entire transformation pipeline from input coordinates (detector by default) to world coordinates.") (license license:bsd-3))) (define-public python-rad (package (name "python-rad") (version "0.21.0") (source (origin (method url-fetch) (uri (pypi-uri "rad" version)) (sha256 (base32 "0b2gfsyccfx9dmmh725h7qjh5rxabg5w1j52yzfi8b0a8nmg6j6a")))) (build-system pyproject-build-system) (arguments (list ;; Ignore tests requiring python-crds to break cycle: ;; python-rad -> python-roman-datamodels -> python-crds -> python-rad #:test-flags #~(list "--ignore=tests/test_schemas.py"))) (native-inputs (list python-pytest python-setuptools-scm)) (propagated-inputs (list python-asdf python-asdf-astropy)) (home-page "https://github.com/spacetelescope/rad") (synopsis "Roman Attribute Dictionary") (description "@acronym{RAD, The Roman Attribute Dictionary} is package which defines schemas for the Nancy Grace Roman Space Telescope shared attributes for processing and archive. These schemas are schemas for the ASDF file file format, which are used by ASDF to serialize and deserialize data for the Nancy Grace Roman Space Telescope.") (license license:bsd-3))) (define-public python-radio-beam (package (name "python-radio-beam") (version "0.3.7") (source (origin (method url-fetch) (uri (pypi-uri "radio-beam" version)) (sha256 (base32 "0dg6vqdhmzh47awdkkcbf455gw6if2qwxyhcqbq2dkhbwsx680gc")))) (build-system pyproject-build-system) (propagated-inputs (list python-astropy python-matplotlib python-numpy python-scipy python-six)) (native-inputs (list python-pytest-astropy python-setuptools-scm)) (home-page "https://radio-beam.readthedocs.io/en/latest/") (synopsis "Operations for radio astronomy beams with Astropy") (description "Radio Beam is a simple toolkit for reading beam information from FITS headers and manipulating beams. Some example applications include: @itemize @item Convolution and deconvolution @item Unit conversion (Jy to/from K) @item Handle sets of beams for spectral cubes with varying resolution between channels @item Find the smallest common beam from a set of beams @item Add the beam shape to a matplotlib plot @end itemize") (license license:bsd-3))) (define-public python-radiospectra (package (name "python-radiospectra") (version "0.6.0") (source (origin (method url-fetch) (uri (pypi-uri "radiospectra" version)) (sha256 (base32 "1mqdh90hpq7sc9lybmc7y33g84vswf7w0r5hs57rf3a9hzfxad90")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-before 'check 'set-home-env (lambda _ ;; Tests require HOME to be set. ;; Permission denied: '/homeless-shelter' (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-cdflib python-matplotlib python-numpy python-scipy python-sunpy)) (native-inputs (list python-pytest-astropy python-setuptools-scm python-sunpy-soar)) (home-page "https://docs.sunpy.org/projects/radiospectra") (synopsis "Support for radio spectra on solar physics") (description "@code{radiospectra} provides support for some type of radio spectra in solar physics.") (license license:bsd-2))) (define-public python-roman-datamodels (package (name "python-roman-datamodels") (version "0.21.0") (source (origin (method url-fetch) (uri (pypi-uri "roman_datamodels" version)) (sha256 (base32 "00hwyxixdk3i48nhqnn7pnkkp3fran6fn8kzwx2w4bjkwv8cd126")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "--numprocesses" "auto") #:phases #~(modify-phases %standard-phases (add-after 'unpack 'set-env (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs (list python-asdf python-asdf-astropy python-astropy python-gwcs python-numpy python-psutil python-rad)) (native-inputs (list python-pytest python-pytest-doctestplus python-pytest-env python-pytest-xdist python-setuptools-scm)) (home-page "https://github.com/spacetelescope/roman_datamodels") (synopsis "Roman Datamodels Support") (description "This package provides a Python package of Roman Datamodels for the calibration pipelines started with the @acronym{JWST, James Webb Space Telescope} calibration pipelines. The goal for the JWST pipelines was motivated primarily by the need to support FITS data files, specifically with isolating the details of where metadata and data were located in the FITS file from the representation of the same items within the Python code. That is not a concern for Roman since FITS format data files will not be used by the Roman calibration pipelines.") (license license:bsd-3))) (define-public python-skyfield (package (name "python-skyfield") (version "1.49") (source (origin (method git-fetch) ; PyPI tarball lacks test data (uri (git-reference (url "https://github.com/skyfielders/python-skyfield") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 "1rk71lzy8w28f2kzhxb3pyndncrj91jay43nvqlrlzjxi2rbg7ix")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list "-m" "assay" "--batch" "skyfield.tests") #:phases #~(modify-phases %standard-phases (replace 'check (lambda* (#:key tests? test-flags #:allow-other-keys) (when tests? (with-directory-excursion "ci" (apply invoke "python" test-flags)))))))) (native-inputs (list python-assay python-pandas)) (propagated-inputs (list python-certifi python-jplephem python-numpy python-sgp4)) (home-page "https://rhodesmill.org/skyfield/") (synopsis "Astronomy for Python") (description "Skyfield computes positions for the stars, planets, and satellites in orbit around the Earth.") (license license:expat))) (define-public python-tweakwcs (package (name "python-tweakwcs") (version "0.8.8") (source (origin (method url-fetch) (uri (pypi-uri "tweakwcs" version)) (sha256 (base32 "148as0x1szk1wv13bwk947qs3rw5xj2286ccdbhzfzarng58a386")))) (build-system pyproject-build-system) (propagated-inputs (list python-astropy python-gwcs python-numpy python-packaging python-spherical-geometry python-stsci-imagestats python-stsci-stimage)) (native-inputs (list python-codecov python-pytest python-pytest-cov python-scipy python-setuptools-scm)) (home-page "https://tweakwcs.readthedocs.io/en/latest/") (synopsis "Algorithms for matching and aligning catalogs and for tweaking the WCS") (description "@code{tweakwcs} is a package that provides core algorithms for computing and applying corrections to @code{WCS} objects such as to minimize mismatch between image and reference catalogs. Currently only aligning images with @code{FITS WCS} and @code{JWST gWCS} are supported.") (license license:bsd-3))) (define-public python-viresclient (package (name "python-viresclient") (version "0.12.0") (source (origin (method url-fetch) (uri (pypi-uri "viresclient" version)) (sha256 (base32 "1y3g59yh3ic5288f2n9r6bj7b0w3vfdfcnqfg1va0z7w9jnk55j1")))) (build-system pyproject-build-system) (native-inputs (list python-flit-core python-pytest)) (propagated-inputs (list python-cdflib python-jinja2 python-netcdf4 python-pandas python-requests python-tables python-tqdm python-xarray)) (home-page "https://viresclient.readthedocs.io/en/latest/") (synopsis "Python client for interacting with a VirES server") (description "This package provides a Python client for interacting with a @code{VirES} server, of which there are two: VirES for @url{https://vires.services, Swarm} and VirES for @url{https://aeolus.services, Aeolus}") (license license:expat))) (define-public python-wiimatch (package (name "python-wiimatch") (version "0.3.2") (source (origin (method url-fetch) (uri (pypi-uri "wiimatch" version)) (sha256 (base32 "15kq7z30m9i286ncs9xvpaq3dq1p5fa47jz21prq146qwr7j6dm8")))) (build-system pyproject-build-system) (propagated-inputs (list python-numpy python-scipy)) (native-inputs (list python-codecov python-pytest python-pytest-cov python-pytest-doctestplus python-setuptools-scm)) (home-page "https://github.com/spacetelescope/wiimatch") (synopsis "Optimal matching of weighted N-dimensional image intensity data") (description "@code{wiimatch} is a package that provides core computational algorithms for optimal @code{matching} of weighted N-dimensional image intensity data using (multivariate) polynomials.") (license license:bsd-3))) (define-public python-yt (package (name "python-yt") (version "4.3.1") (source (origin (method url-fetch) (uri (pypi-uri "yt" version)) (sha256 (base32 "03jy35vyniyd1pd3sv0zpd2f3ks2iyqw65xv28ids8nw6v1vavbv")))) (build-system pyproject-build-system) (arguments (list #:build-backend "setuptools.build_meta" #:test-flags #~(list "-n" "auto") #:phases #~(modify-phases %standard-phases (add-after 'unpack 'relax-requirements (lambda _ (substitute* "pyproject.toml" ;; XXX: Updating ipywidgets requires long chain of rebuilds, ;; maybe for python-team. ;; ;; ipywidgets>=8.0.0 ((">=8.0.0") ">=7.6.3")))) (add-before 'check 'prepare-test-environment (lambda _ (setenv "HOME" "/tmp") (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-cmyt python-ewah-bool-utils python-ipywidgets python-matplotlib python-more-itertools-next python-numpy python-packaging python-pillow python-tomli-w python-tqdm python-unyt)) (native-inputs (list python-cython-3 python-nose python-nose-exclude python-nose-timer python-pyaml python-pytest python-pytest-mpl python-pytest-xdist python-setuptools python-sympy)) (home-page "http://yt-project.org/") (synopsis "Analyzing and visualizing volumetric data framework") (description "This package provides a structured, variable-resolution meshes, unstructured meshes, and discrete or sampled data such as particles. Focused on driving physically-meaningful inquiry, it has been applied in domains such as astrophysics, seismology, nuclear engineering, molecular dynamics, and oceanography.") (license (list ;; COPYING.txt: for Python code. ;; ;; yt uses a shared copyright model. Each contributor maintains ;; copyright over their contributions to yt. But, it is important ;; to note that these contributions are typically only changes to ;; the repositories. Thus, the yt source code, in its entirety is ;; not the copyright of any single person or institution. Instead, ;; it is the collective copyright of the entire yt Development ;; Team. If individual contributors want to maintain a record of ;; what changes/contributions they have specific copyright on, ;; they should indicate their copyright in the commit message of ;; the change, when they commit the change to one of the yt ;; repositories. license:bsd-3 ;; yt/frontends/artio/artio_headers/LICENSE: for C code. license:lgpl3)))) (define-public python-yt-astro-analysis (package (name "python-yt-astro-analysis") (version "1.1.3") (source (origin (method url-fetch) (uri (pypi-uri "yt_astro_analysis" version)) (sha256 (base32 "1fb3sdp6hq2c4c28pd33v9yj14x9l7qizf3y3qpl594qdq1ffmpi")))) (build-system pyproject-build-system) (arguments (list ;; Disable test which require MPI setup and failed to run, check why. #:test-flags #~(list "--ignore=test_halo_finders_ts.py") #:phases #~(modify-phases %standard-phases (add-before 'check 'build-extensions (lambda _ (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-h5py python-numpy python-packaging python-yt)) (native-inputs (list python-cython python-nose python-tomli)) (home-page "https://github.com/yt-project/yt_astro_analysis") (synopsis "YT astrophysical analysis modules") (description "This package provides an @code{yt} extension package for astrophysical analysis. This package contains functionality for: @itemize @item halo finding and analysis @item lightcones @item planning cosmological simulations for making lightcones and lightrays @item exporting to the RADMC-3D radiation transport code @item creating PPV FITS cubes @end itemize") (license (list license:bsd-3 license:lgpl3)))) (define-public python-zodipy (package (name "python-zodipy") (version "1.0.0") (source (origin (method git-fetch) ;; no tests in the PyPI tarball (uri (git-reference (url "https://github.com/Cosmoglobe/zodipy") (commit (string-append "v." version)))) (file-name (git-file-name name version)) (sha256 (base32 "08hwicpv3wfpccr2cj1vxb8iy7av12yjs3prq0zw7qc89imrgrbn")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases (add-after 'unpack 'relax-requirements (lambda _ (substitute* "pyproject.toml" ;; numpy = "^1.26.4" (("1.26.4") "1.23.2") ;; scipy = "^1.13.0" (("1.13.0") "1.12.0"))))))) (propagated-inputs (list python-astropy python-jplephem python-numpy python-scipy)) (native-inputs (list python-poetry-core python-pytest)) (home-page "https://github.com/Cosmoglobe/zodipy") (synopsis "Zodiacal emission simulations") (description "ZodiPy is an package for simulating zodiacal light in intensity for arbitrary solar system observers.") (license license:gpl3+))) (define-public qfits (package (name "qfits") (version "6.2.0") (source (origin (method url-fetch) (uri (string-append "ftp://ftp.eso.org/pub/qfits/qfits-" version ".tar.gz")) (sha256 (base32 "0m2b21mim3a7wgfg3ph2w5hv7mdvr03jmmhzipc0wcahijglcw9j")))) (build-system gnu-build-system) (home-page "https://www.eso.org/sci/software/eclipse/qfits/") (synopsis "C library offering access to astronomical FITS files") (description "@code{qfits} is a C library giving access to FITS file internals, both for reading and writing.") (license license:gpl2+))) (define-public stuff (package (name "stuff") (version "2.0.1") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/astromatic/stuff") ;; XXX: No version tag available in GitHub. ;; See: https://github.com/astromatic/stuff/issues/6 (commit "9008dc022ef53331092da248cf0a794abd6783bf"))) (file-name (git-file-name name version)) (sha256 (base32 "004sry5lqqm7s9x4l3agysp3n63y3ga35x1rwwda4m6dc6zvla6b")))) (build-system gnu-build-system) (native-inputs (list autoconf automake libtool pkg-config)) (home-page "https://www.astromatic.net/software/stuff") (synopsis "Astronomical catalogue simulation") (description "Stuff is a program that simulates \"perfect\" astronomical catalogues. It generates object lists in ASCII which can read by the SkyMaker program to produce realistic astronomical fields. Stuff is part of the @uref{https://www.astromatic.net/projects/efigi, EFIGI} development project.") (license license:gpl3+))) (define-public sunclock (let ((commit "f4106eb0a81f7594726d6b2859efd8fc64cc1225") (revision "1")) (package (name "sunclock") (version (git-version "3.57" revision commit)) (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/nongiach/Sunclock") (commit commit))) (file-name (git-file-name name version)) (sha256 (base32 "1rczdpmhvfw57b9r793vq8vqlbdhlkgj52fxwrdfl6cwj95a9kv2")))) (build-system gnu-build-system) (arguments `(#:make-flags (list (string-append "DESTDIR=" %output) ;; Fix incorrect argument given to gcc. Error message: ;; "gcc: error: DefaultGcc2AMD64Opt: No such file or directory" "CDEBUGFLAGS=") #:phases (modify-phases %standard-phases (replace 'configure (lambda _ (chdir "sunclock-3.57") (substitute* "Imakefile" (("^MANDIR=/X11R6/man/man1") "MANDIR=/share/man/man1") (("^BINDIR=/X11R6/bin") "BINDIR=/bin") ;; Disable ZLIB support for vmf files because zlib implements ;; `gzgetc` as a macro instead of a function, which results in ;; a compilation error. ((" -DZLIB") "") ((" -lz") "") (("cd \\$\\(DESTDIR\\)\\$\\(SHAREDIR\\)/earthmaps/vmf ; \ gzip -f \\*.vmf") "")) ;; Generate Makefile. (invoke "xmkmf")))) #:tests? #f)) ; No check target. (inputs (list libjpeg-turbo libpng libx11 libxpm)) (native-inputs (list imake)) (home-page "https://github.com/nongiach/Sunclock") (synopsis "Map of the Earth that shows which portion is illuminated by the Sun") (description "Sunclock displays a map of the Earth and shows which portion is illuminated by the Sun. It can commute between two states, the \"clock window\" and the \"map window\". The clock window displays a small map of the Earth and therefore occupies little space on the screen, while the \"map window\" displays a large map and offers more advanced functions: local time of cities, Sun and Moon position, etc.") (license license:gpl2+)))) (define-public swarp (package (name "swarp") (version "2.41.5") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/astromatic/swarp") (commit (string-append version)))) (file-name (git-file-name name version)) (sha256 (base32 "00463r5rd4xl74xs4h1n4gl2qk7v9p5nw9x05pbzgh8jm77q90qq")))) (build-system gnu-build-system) (native-inputs (list automake autoconf libtool pkg-config)) (inputs (list cfitsio)) (home-page "https://www.astromatic.net/software/swarp") (synopsis "FITS image resampling and co-addition") (description "SWarp is a program that resamples and co-adds together FITS images using any arbitrary astrometric projection defined in the WCS standard.") (license license:gpl3+))) (define-public unsio ;; There is no versioned tag, use the latest commit. (let ((commit "25e52468298e1194c9726ef5dba9d5fbb46870f5") (revision "0")) (package (name "unsio") (version (git-version "1.3.3" revision commit)) (source (origin (method git-fetch) (uri (git-reference (url "https://gitlab.lam.fr/infrastructure/unsio") (commit commit))) (file-name (git-file-name name version)) (sha256 (base32 "110i2p5608zhh5w3pf3b5r2651hykw2ayspgq6vpqsffhya1p170")) (modules '((guix build utils))) (snippet ;; force installation into lib/ instead of lib64/ #~(substitute* "cmake/DetectCpackGenerator.cmake" (("lib64") "lib"))))) (build-system cmake-build-system) (arguments (list #:tests? #f ; no tests #:build-type "Release" ; to improve performace #:configure-flags #~(list "-DCMAKE_CXX_STANDARD=14"))) (inputs (list gfortran hdf5 perl sqlite zlib)) (home-page "https://projets.lam.fr/projects/unsio/wiki") (synopsis "Input and output routines for n-body file formats") (description "@acronym{UNSIO, Universal Nbody Snapshot Input Output} provides an API for performing input and output operations on different kinds of n-body file formats (nemo, Gadget binaries 1 and 2, Gadget hdf5, Ramses).") (license license:cecill)))) (define-public wcstools (package (name "wcstools") (version "3.9.7") (source (origin (method url-fetch) (uri (string-append "http://tdc-www.harvard.edu/software/wcstools/wcstools-" version ".tar.gz")) (sha256 (base32 "125hqzspvqrx6372smzsmxwg06ib2arjc5awnwnq53w1xdq6jpsj")) (patches (search-patches "wcstools-extend-makefiles.patch")))) (build-system gnu-build-system) (arguments (list #:tests? #f ;No tests provided. #:make-flags #~(list (string-append "CC=" #$(cc-for-target)) (string-append "PREFIX=" #$output)) #:phases #~(modify-phases %standard-phases (delete 'configure)))) (home-page "http://tdc-www.harvard.edu/software/wcstools/") (synopsis "Handle the WCS of a FITS image") (description "WCSTools is a set of software utilities, written in C, which create, display and manipulate the world coordinate system of a FITS or IRAF image, using specific keywords in the image header which relate pixel position within the image to position on the sky. Auxillary programs search star catalogs and manipulate images.") (license license:gpl2+))) (define-public weightwatcher (package (name "weightwatcher") (version "1.12") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/astromatic/weightwatcher") (commit version))) (file-name (git-file-name name version)) (sha256 (base32 "0701z6bdqq32jv7ga3n6jh27q684ni0hbfjm1mak7rh0qqx089gi")))) (build-system gnu-build-system) (arguments (list #:configure-flags #~(list "CFLAGS=-fcommon"))) ; fix build with GCC 10 (home-page "https://www.astromatic.net/software/weightwatcher") (synopsis "Weight-map/flag-map multiplexer and rasteriser") (description "Weightwatcher is a program hat combines weight-maps, flag-maps and polygon data in order to produce control maps which can directly be used in astronomical image-processing packages like Drizzle, Swarp or SExtractor.") (license license:gpl3+))) (define-public xplanet (package (name "xplanet") (version "1.3.1") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/xplanet/xplanet/" version "/xplanet-" version ".tar.gz")) (sha256 (base32 "1rzc1alph03j67lrr66499zl0wqndiipmj99nqgvh9xzm1qdb023")) (patches (search-patches "xplanet-1.3.1-cxx11-eof.patch" "xplanet-1.3.1-libdisplay_DisplayOutput.cpp.patch" "xplanet-1.3.1-libimage_gif.c.patch" "xplanet-1.3.1-xpUtil-Add2017LeapSecond.cpp.patch")))) (build-system gnu-build-system) (arguments (list #:configure-flags #~(list ;; No NASA JPL cspice support. "--without-cspice" (string-append "CPPFLAGS=-I" #$(this-package-input "netpbm") "/include/netpbm")))) (native-inputs (list pkg-config)) (inputs (list freetype giflib libice libjpeg-turbo libpng libtiff libx11 libxscrnsaver netpbm pango zlib)) (home-page "https://xplanet.sourceforge.net/") (synopsis "Planetary body renderer") (description "Xplanet renders an image of a planet into an X window or file. All of the major planets and most satellites can be drawn and different map projections are also supported, including azimuthal, hemisphere, Lambert, Mercator, Mollweide, Peters, polyconic, orthographic and rectangular.") (license license:gpl2+))) ;;; ;;; Avoid adding new packages to the end of this file. To reduce the chances ;;; of a merge conflict, place them above in alphabetical order. ;;;