aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
blob: 6a90aa94565500025ce71530a643c276baec523a (about) (plain)
blob size (211KB) exceeds display size limit (100KB).
class='logheader'>2020-05-22doc: Update 'Bootstrapping' for further binary seed reduction.Jan Nieuwenhuizen * doc/images/gcc-core-mesboot0-graph.dot: New image, replacing * doc/images/gcc-mesboot0-bag-graph.dot: ... remove file. * doc/local.mk (DOT_FILES): Update for new image file. * doc/guix.texi (Reduced Binary Seed Bootstrap): Use it in updated description of further reduction of the trusted computing base. 2020-04-24doc: Ensure guix-daemon is built before creating guix-daemon.1.Marius Bakke * doc/local.mk ($(srcdir)/%D%/guix-daemon.1): Depend on guix-daemon$(EXEEXT) instead of its source code. 2020-04-23build: Don't build man pages when cross-compiling.Ludovic Courtès * configure.ac: Define 'CROSS_COMPILING' Automake conditional. * doc/local.mk (dist_man1_MANS): Wrap in "if !CROSS_COMPILING". 2020-04-23doc: Build more man pages.Ludovic Courtès * doc/local.mk (sub_commands_mans): Add guix-deploy.1, guix-time-machine.1, and guix-weather.1. 2020-04-16doc: Document building and installing from JSON files.Ricardo Wurmus * doc/guix.texi (Invoking guix package): Augment pargraphs for "--install-from-file". (Invoking guix build): Document building from JSON files. * doc/package-hello.json: New file. * doc/local.mk (EXTRA_DIST): Add it. 2020-02-17doc: Add German Cookbook translation.Florian Pelz * doc/local.mk (info_TEXINFOS): Add guix-cookbook.de.texi. (TRANSLATED_INFO): Add guix-cookbook.de.texi. * po/doc/guix-cookbook.de.po: New file. * po/doc/local.mk (DOC_COOKBOOK_PO_FILES): Add guix-cookbook.de.po. 2019-09-24Merge branch 'master' into core-updatesLudovic Courtès 2019-09-18doc: Add Guix Cookbook.Ricardo Wurmus * .gitignore: Update ignore list. * Makefile.am (assert-no-store-file-names): Exclude the cookbook. * bootstrap: Generate po files for cookbook translations. * doc/guix-cookbook.texi: New file. * doc/local.mk (info_TEXINFOS): Add it; add a rule to build cookbook translations. * po/doc/local.mk (DOC_COOKBOOK_PO_FILES): New variable. (EXTRA_DIST): Add cookbook pot file and po files. (doc-po-update-cookbook-%): New target. (doc-pot-update): Also update cookbook pot file. (doc-po-update): Also update cookbook po files. 2019-05-25Merge branch 'staging' into core-updatesMarius Bakke 2019-05-13doc: Add Russian translation.Ludovic Courtès * doc/local.mk (info_TEXINFOS): Add guix.ru.texi. (TRANSLATED_INFO): Add {guix,contributing}.ru.texi. * po/doc/local.mk (DOC_PO_FILES): Add guix-manual.ru.po. * po/doc/guix-manual.ru.po: New file. 2019-05-04doc: Warn about missing entries in htmlxref.cnf.Ludovic Courtès * doc/local.mk (AM_MAKEINFOHTMLFLAGS): New variable. 2019-05-01Merge branch 'master' into core-updatesMarius Bakke 2019-04-24doc: Add Simplified Chinese translation.Ludovic Courtès * doc/local.mk (info_TEXINFOS): Add guix.zh_CN.texi. (TRANSLATED_INFO): Add guix.zh_CN.texi and contributing.zh_CN.texi. * po/doc/local.mk (DOC_PO_FILES): Add guix-manual.zh_CN.po. * doc/contributing.zh_CN.texi, doc/guix.zh_CN.texi: New files. 2019-04-23doc: Add Spanish translation.Miguel Ángel Arruga Vivas * doc/local.mk (info_TEXINFOS): Add guix.es.texi. (TRANSLATED_INFO): Add guix.es.texi and contributing.es.texi. * po/doc/guix-manual.es.po: New file. * po/doc/local.mk: Add guix-manual.es.po. Signed-off-by: Ludovic Courtès <ludo@gnu.org> 2019-03-14Merge branch 'staging' into core-updatesMarius Bakke 2019-03-13doc: Document the graphical installer some more.Ludovic Courtès * doc/guix.texi (Preparing for Installation): Rewrite to specify the two installation modes. (Guided Graphical Installation): New node. (Manual Installation): New node, with the former sections. (After System Installation): New node. * doc/images/installer-network.png, doc/images/installer-partitions.png, doc/images/installer-resume.png: New files. * doc/local.mk (dist_infoimage_DATA): Add them. 2018-12-11Merge branch 'master' into core-updatesMarius Bakke 2018-11-01doc: Add German translation.Julien Lepiller * doc/contributing.de.texi: New file. * doc/guix.de.texi: New file * doc/local.mk (TRANSLATED_INFO): Add them. (info_TEXINFOS): Add guix.de.texi. * po/doc/guix-manual.de.po: New file. * po/doc/local.mk (EXTRA_DIST): Add it. * doc/guix.texi: Document the German translation. 2018-09-23doc: Describe the Reduced Binary Seed bootstrap.Jan Nieuwenhuizen * doc/guix.texi (Reduced Binary Seed Bootstrap): New node. * doc/images/gcc-mesboot-bag-graph.dot: New file. * doc/local.mk (DOT_FILES): Add it. 2018-04-29build: Use only one domain for guix-manual.Julien Lepiller * Makefile.am (assert-no-store-file-names): Exclude guix-manual. * po/doc/guix.pot po/doc/contributing.pot: Merge into... * po/doc/guix-manual.pot: ...this. * po/doc/guix.fr.po po/doc/contributing.fr.po: Merge into... * po/doc/guix-manual.fr.po: ...this. * doc/local.mk: Replace old file names. * po/doc/local.mk: Replace old file names. 2018-04-25build: Add silent rules for Texinfo xref translation.Ludovic Courtès * Makefile.am (AM_V_POXREF, AM_V_POXREF_, AM_V_POXREF_0): New variables. * doc/local.mk ($(srcdir)/%D%/guix.%.texi) ($(srcdir)/%D%/contributing.%.texi): Use $(AM_V_POXREF). 2018-04-19gnu: doc: Add French documentation.Julien Lepiller * doc/contributing.fr.texi: New file. * doc/guix.fr.texi: New file. * doc/local.mk (TRANSLATED_INFO): Add them. (info_TEXINFOS): Add guix.fr.texi. * po/doc/contributing.fr.po: New file. * po/doc/guix.fr.po: New file. * po/doc/local.mk (EXTRA_DIST): Add them. 2018-04-19gnu: doc: Allow documentation to be translated.Julien Lepiller * po/doc/contributing.pot: New file. * po/doc/guix.pot: New file. * po/doc/local.mk: New file. * Makefile.am: Include it. Add gettext command. Add silent rules for po4a. * configure.ac: Look for po4a-translate and po4a-updatepo. * doc/local.mk: Add rules to generate translated texi files. (TRANSLATED_INFO): New variable. (BUILT_SOURCES, EXTRA_DIST, MAINTAINERCLEANFILES): Add it. * .gitignore: Add generated files. 2018-01-20build: Declare “doc/guix.texi“ dependencies.Mathieu Lirzin Fixes <https://bugs.gnu.org/29727>. * doc/local.mk (%C%_guix_TEXINFOS): New variable containing files included by “doc/guix.texi”. (EXTRA_DIST): Remove ‘.texi’ files. Signed-off-by: Ludovic Courtès <ludo@gnu.org>