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w files. Co-authored-by: Sarah Morgensen <iskarian@mgsn.dev> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen ail'>...* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philippe SWARTVAGHER 2023-05-31gnu: Add updater input properties for R and Python packages....* gnu/packages/cran.scm (r-glue, r-xfun, r-vctrs) (r-lifecycle): Turn comment about r-knitr into 'properties' field. * gnu/packages/mpi.scm (python-mpi4py)[properties]: New field. Ludovic Courtès 2023-05-28gnu: python-mpi4py: Update home-page....* gnu/packages/mpi.scm (python-mpi4py)[home-page]: Use “github.com” instead of “bitbucket.com”. Liliana Marie Prikler 2023-05-24gnu: python-mpi4py: Update to 3.1.4....* gnu/packages/mpi.scm (python-mpi4py): Update to 3.1.4. Ludovic Courtès 2023-04-24gnu: openmpi: Update to 4.1.5....* gnu/packages/mpi.scm (openmpi): Update to 4.1.5. Ludovic Courtès 2023-04-07gnu: Purge pre-1.3.0 deprecated packages....* gnu/packages/bioinformatics.scm (deeptools): Remove variable. * gnu/packages/efi.scm (efi_analyzer): Ditto. * gnu/packages/guile.scm (guile-2.2/bug-fix, guile-json): Ditto. * gnu/packages/image.scm (libjpeg): Ditto. * gnu/packages/kde.scm (kdevplatform): Ditto * gnu/packages/linphone.scm (linphoneqt): Ditto. * gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): Ditto. * gnu/packages/mpi.scm (hwloc-2.0): Ditto. * gnu/packages/music.scm (python-abjad, zlfo): Ditto. * gnu/packages/perl.scm (perl-base, perl-parent): Ditto. * gnu/packages/tryton.scm (python-trytond): Ditto. * gnu/packages/video.scm (gnome-mpv): Ditto. * tests/graph.scm: Use guile-json-1. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Bruno Victal 2023-04-07gnu: hwloc: Update to 2.9.1....* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.1. Patch to skip tests requiring /sys on non-x86 systems should not be necessary anymore, as https://github.com/open-mpi/hwloc/pull/570 has been merged in this new version. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philippe SWARTVAGHER 2023-02-27gnu: hwloc: Skip failing test on non-x86 systems....* gnu/packages/mpi.scm (hwloc-2)[arguments]<#:phases>: Rename "skip-test-that-requires-/sys" phase to "skip-tests-that-require-/sys" and expand to skip additional test requiring /sys on non-x86 systems. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Simon South 2023-02-27gnu: hwloc: Remove obsolete comments....hwloc 2.x become the default with commit 8ec7ca22d3, "gnu: hwloc: Default to 2.x.". * gnu/packages/mpi.scm (hwloc-1): Remove obsolete comment. (hwloc-2): Remove obsolete comment. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Simon South 2023-02-27gnu: Fix openmpi related packages....This makes these package definitions compatible with the openmpi package which uses gexps as of f45fc72c282bc14da7212b4acb8fe9707e53aad0. * gnu/packages/mpi.scm (openmpi-c++, java-openmpi, openmpi-thread-multiple)[arguments]: Use gexps. Christopher Baines 2023-02-23gnu: openmpi: Use gexps....* gnu/packages/mpi.scm (openmpi)[arguments]: Use gexps. Ludovic Courtès 2023-01-27gnu: hwloc: Update to 2.9.0....* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.0. [arguments]: Add 'skip-test-that-requires-/sys' phase. (%openmpi-setup): Set 'HWLOC_SYNTHETIC' environment variable. * gnu/packages/opencl.scm (pocl)[arguments]: In 'set-HOME' phase, also set 'HWLOC_SYNTHETIC'. Ludovic Courtès 2022-11-11gnu: java-openmpi: Remove unused module import....* gnu/packages/mpi.scm (java-openmpi)[arguments]: Don't import (guix build syscalls). Marius Bakke 2022-10-31gnu: Fix various lint issues in synopsis and descriptions....* gnu/packages/android.scm (etc1tool)[synopsis]: Drop trailing period. * gnu/packages/bioinformatics.scm (mudskipper)[synopsis]: Likewise. * gnu/packages/crates-io.scm (rust-async-log-attributes-1)[synopsis]: Likewise. (rust-atomic-polyfill-1)[synopsis]: Likewise. (rust-modifier-0.1)[synopsis]: Likewise. (rust-openssl-macros-0.1)[synopsis]: Likewise. (rust-syn-mid-0.5)[synopsis]: Likewise. (rust-toml-edit-0.14)[synopsis]: Likewise. (rust-valuable-derive-0.1)[synopsis]: Likewise. (rust-inflections-1)[synopsis]: Likewise. * gnu/packages/databases.scm (python-databases)[synopsis]: Likewise. * gnu/packages/games.scm (liquidwar6)[synopsis]: Likewise. * gnu/packages/golang.scm (go-golang.org-x-sync-errgroup)[synopsis]: Likewise. * gnu/packages/guile-xyz.scm (guile-config)[synopsis]: Likewise. * gnu/packages/haskell-web.scm (ghc-hxt-xpath)[synopsis]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-string-qq)[synopsis]: Likewise. * gnu/packages/machine-learning.scm (python-lap)[synopsis]: Likewise. (python-pyro-api)[synopsis]: Likewise. * gnu/packages/messaging.scm (python-librecaptcha)[synopsis]: Likewise. * gnu/packages/python-check.scm (python-pytest-cram)[synopsis]: Likewise. * gnu/packages/python-web.scm (python-jschema-to-python)[synopsis]: Likewise. (python-sarif-om)[synopsis]: Likewise. (python-socksio)[synopsis]: Likewise. (python-msrest)[synopsis]: Likewise. * gnu/packages/tor.scm (torsocks)[synopsis]: Likewise. * gnu/packages/cran.scm (r-rlist)[synopsis]: Remove leading article. * gnu/packages/crates-io.scm (rust-clippy-lints-0.0.153)[synopsis]: Likewise. (rust-simplelog-0.11)[synopsis]: Likewise. * gnu/packages/samba.scm (wsdd)[synopsis]: Likewise. * gnu/packages/crates-io.scm (rust-spki-0.4)[synopsis]: Remove trailing whitespace. * gnu/packages/golang.scm (go-github-com-mattn-go-zglob)[description]: Remove leading whitespace. * gnu/packages/haskell-check.scm (ghc-crypto-cipher-tests)[description]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-ctype)[synopsis]: Remove trailing whitespace. * gnu/packages/mpi.scm (openmpi-thread-multiple)[description]: Remove leading whitespace. * gnu/packages/node-xyz.scm (node-string-decoder)[synopsis]: Remove trailing whitespace. Vagrant Cascadian 2022-07-12gnu: openmpi: Only build with valgrind on supported systems....* gnu/packages/mpi.scm (openmpi)[inputs]: Wrap valgrind in if-supported macro. [arguments]: Adjust configure-flags based on if valgrind is present. Efraim Flashner 2022-07-06gnu: hwloc: Update to 2.8.0...* gnu/packages/mpi.scm (hwloc): Update to 2.8.0 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Philippe SWARTVAGHER