| Age | Commit message (Expand) | Author |
|---|
| 2021-07-22 | gnu: Add htslib-1.10....* gnu/packages/bioinformatics.scm (htslib-1.10): New variable.
| Efraim Flashner |
| 2021-07-22 | gnu: python-biopython: Update to 1.73....* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.73.
| Efraim Flashner |
| 2021-07-21 | gnu: onionshare: Update to 2.3.2....* gnu/packages/tor.scm (onionshare-cli, onionshare): Update to 2.3.2.
(onionshare)[inputs]: Add python-colorama.
[arguments]: Insert "import pytest" for later "pytest.mark.skip".
| Eric Bavier |
| 2021-07-22 | gnu: Add emacs-seeing-is-believing....* gnu/packages/emacs-xyz.scm (emacs-seeing-is-believing): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Joseph LaFreniere |
| 2021-07-22 | gnu: guile-git: Update to 0.5.2....Fixes <https://issues.guix.gnu.org/48855>.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.
* gnu/packages/guile.scm (guile-git): Update to 0.5.2.
| Ludovic Courtès |
| 2021-07-21 | gnu: extempore: Update to 0.8.9....* gnu/packages/music.scm (extempore): Update to 0.8.6.
[source]: Portaudio is no more in-tree.
[arguments]: Load external libraries through patched CMakeLists.txt.
[phases]: Symlink assets.
* gnu/packages/patches/extempore-unbundle-external-dependencies.patch:
Update accordingly.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Giacomo Leidi |
| 2021-07-21 | gnu: Add python-sparqlkernel....* gnu/packages/jupyter.scm (python-sparqlkernel): New variable.
| Lars-Dominik Braun |
| 2021-07-21 | gnu: Add python-sparqlwrapper....* gnu/packages/rdf.scm (python-sparqlwrapper): New variable.
| Lars-Dominik Braun |
| 2021-07-21 | gnu: Add python-bash-kernel....* gnu/packages/jupyter.scm (python-bash-kernel): New variable.
| Lars-Dominik Braun |
| 2021-07-21 | gnu: Add r-battenberg....* gnu/packages/bioinformatics.scm (r-battenberg): New variable.
| Lars-Dominik Braun |
| 2021-07-21 | gnu: Add r-ascat....* gnu/packages/bioinformatics.scm (r-ascat): New variable.
| Lars-Dominik Braun |
| 2021-07-21 | gnu: Add nanosv....* gnu/packages/bioinformatics.scm (nanosv): New variable.
| Lars-Dominik Braun |
| 2021-07-21 | gnu: Add python-pyvcf....* gnu/packages/bioinformatics.scm (python-pyvcf): New variable.
| Lars-Dominik Braun |
| 2021-07-21 | gnu: checkm: Rename and update to 1.1.3....Renamed from python2-checkm-genome to checkm to better reflect its
status as standalone-application and support for Python 3.
* gnu/packages/bioinformatics.scm (python2-checkm-genome): Redirect to…
(checkm): …here and update to 1.1.3.
[propagated-inputs]: Move to inputs.
[inputs]: Use Python 3 dependencies.
[home-page]: Point to real home-page.
| Lars-Dominik Braun |
| 2021-07-21 | gnu: Add tombo....* gnu/packages/bioinformatics.scm (tombo): New variable.
| Lars-Dominik Braun |
| 2021-07-21 | gnu: Add r-rmisc....* gnu/packages/cran.scm (r-rmisc): New variable.
| Lars-Dominik Braun |
| 2021-07-21 | gnu: Add r-glinternet....* gnu/packages/statistics.scm (r-glinternet): New variable.
| Lars-Dominik Braun |
| 2021-07-21 | gnu: Add r-naniar....* gnu/packages/statistics.scm (r-naniar): New variable.
| Lars-Dominik Braun |
| 2021-07-21 | gnu: Add r-norm....* gnu/packages/statistics.scm (r-norm): New variable.
| Lars-Dominik Braun |
| 2021-07-21 | gnu: txr: Reduce closure size....* gnu/packages/lisp.scm (txr)[inputs]: Replace bash by bash-minimal.
| Guillaume Le Vaillant |
| 2021-07-21 | gnu: catfish: Update to 4.16.1....* gnu/packages/xfce.scm (catfish): Update to 4.16.1.
[inputs]: Add xfconf.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Michael Rohleder |
| 2021-07-20 | gnu: Add libgpiod....* gnu/packages/linux.scm (libgpiod): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ivan Gankevich |
| 2021-07-20 | gnu: dealii: Update to 9.3.1 and clean up....The cleanup notably:
* Builds and installs the documentation into a separate doc output (in
the process moving around some files erroneously installed into the root
directory); and
* Removes unnecessary inputs and moves some inputs into
propagated-inputs (the candidates of which were determined with a search
for "include.*LIBNAME" in include/deal.II).
* gnu/packages/maths.scm (dealii): Reword comments.
[version]: Update to 9.3.1.
[outputs]: New field including doc output.
[native-inputs]: New field.
[inputs]: Sort them. Remove p4est (deal.II interfaces with it only when
MPI is enabled). Move boost, suitesparse and tbb to...
[propagated-inputs]: ...here. New field including hdf5, which is
actually supported in deal.II without MPI.
[arguments]<#:tests?>: New argument. The tests were not being run before
anyway.
<#:configure-flags>[-DDEAL_II_COMPONENT_DOCUMENTATION]: New flag.
[-DDEAL_II_DOCREADME_RELDIR]: New flag. Prevents the LICENSE.md,
README.md, detailed.log and summary.log files from being installed in
the root directory (though note that the logs are removed in the new
remove-build-logs phase).
[-DDEAL_II_DOCHTML_RELDIR]: New flag.
[-DDEAL_II_COMPILE_EXAMPLES]: New flag.
[-DDEAL_II_EXAMPLES_RELDIR]: New flag. Prevents the examples directory
from being installed in the root directory.
[-DCMAKE_POSITION_INDEPENDENT_CODE]: Remove flag. The issue has been
resolved.
<#:phases>{remove-build-logs}: New phase.
[home-page]: Add trailing slash.
(dealii-openmpi): Use package/inherit.
[inputs]: Sort them. Remove mumps-metis-openmpi (deal.II no longer
interfaces with MUMPS). Move hdf5-parallel-openmpi, openmpi,
p4est-openmpi, petsc-openmpi and slepc-openmpi to...
[propagated-inputs]: ...here. New field.
[arguments]<#:configure-flags>: Rename cf variable to flags.
<#:phases>{mpi-setup}: Remove phase which is unused because the tests
are disabled.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2021-07-20 | gnu: xorg.scm: Add missing module import....This is a follow-up to 1a4c7ddefe2a1c853fb99989e21f867e1965ec59.
* gnu/packages/xorg.scm: Add missing module import.
| Efraim Flashner |
| 2021-07-20 | gnu: Add python-tldr....* gnu/packages/python-xyz.scm (python-tldr): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Tanguy Le Carrour |
| 2021-07-20 | gnu: rust-openssl-sys-extras-0.7: Skip build....* gnu/packages/crates-io.scm (rust-openssl-sys-extras-0.7)
[arguments]: Skip build.
[inputs]: Remove openssl-1.0.
| Efraim Flashner |
| 2021-07-20 | gnu: rust-openssl-0.7: Skip build....* gnu/packages/crates-io.scm (rust-openssl-0.7)[arguments]: Skip build.
Remove tests keyword.
[inputs]: Remove openssl-1.0.
| Efraim Flashner |
| 2021-07-20 | gnu: rust-sha1-0.2: Skip tests....* gnu/packages/crates-io.scm (rust-sha1-0.2)[arguments]: Skip tests.
[inputs]: Remove openssl-1.0.
| Efraim Flashner |
| 2021-07-20 | gnu: gpodder: Make the check phase honor the tests? argument....* gnu/packages/gpodder.scm (gpodder)[arguments]: Adjust custom 'check
phase to skip tests when #:tests? is #f.
| Efraim Flashner |
| 2021-07-20 | gnu: gpodder: Add bash-minimal....* gnu/packages/gpodder.scm (gpodder)[inputs]: Add bash-minimal.
| Efraim Flashner |
| 2021-07-20 | gnu: gpodder: Add python-mutagen (fixes one of its addons)....* gnu/packages/gpodder.scm (gpodder)[inputs]: Added python-mutagen.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| raingloom |
| 2021-07-20 | gnu: xpra: Add bash-minimal....* gnu/packages/xorg.scm (xpra)[inputs]: Add bash-minimal.
| Efraim Flashner |
| 2021-07-20 | gnu: xpra: Update to 4.2.1....* gnu/packages/xorg.scm (xpra): Update to 4.2.1.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Matthew James Kraai |
| 2021-07-20 | gnu: pipe-viewer: Correct references to youtube-dl program....* gnu/packages/videos.scm (pipe-viewer)[phases](patch-source): Modify.
| Raghav Gururajan |
| 2021-07-20 | gnu: claws-mail: Use absolute paths to referenced programs....* gnu/packages/mail.scm (claws-mail)[phases](patch-source): New phase.
[inputs]: Add mailutils and sendmail.
| Raghav Gururajan |
| 2021-07-20 | gnu: python-graph-tool: Sort inputs alphabetically....* gnu/packages/graph.scm (python-graph-tool)[native-inputs]: Sort
alphabetically.
[inputs]: Same.
[propagated-inputs]: Same.
| Efraim Flashner |
| 2021-07-20 | gnu: Add sequeler....* gnu/packages/databases.scm (sequeler): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Alexandre Hannud Abdo |
| 2021-07-20 | gnu: python-graph-tool: Update to 2.43....* gnu/packages/graph.scm (python-graph-tool): Update to 2.43.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Alexandre Hannud Abdo |
| 2021-07-20 | gnu: txr: Update to 266....* gnu/packages/lisp.scm (txr)[version]: Update to 266.
[inputs]: Add bash.
[arguments]<#:phases>{inhibit-doc-syms-generation}: Correct the path to
doc-syms.tl to its new location.
{fix-tests}: Fix another test.
{fix-paths}: New phase.
Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
| Paul A. Patience |
| 2021-07-20 | gnu: txr: Fix license installation....The install-license-files phase was installing LICENSE-CYG when it
shouldn't have, because that license applies only to TXR builds for
Microsoft Windows; and it was also ignoring the METALICENSE file.
However, TXR's Makefile was already installing the LICENSE and
METALICENSE files into share/txr (the datadir), so redirect them into
the appropriate doc directory and delete the install-license-files
phase.
* gnu/packages/lisp.scm (txr)[arguments]<#:phases>
{fix-license-installation}: New phase.
{install-license-files}: Delete phase.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Paul A. Patience |
| 2021-07-20 | gnu: txr: Build documentation....* gnu/packages/lisp.scm (man-for-txr): New variable.
(txr)[native-inputs]: New field.
[inputs]: Move above the arguments field.
[arguments]<#:phases>{inhibit-doc-syms-generation, build-doc, install-doc}:
New phases.
{fix-tests}: Add after the unpack phase rather than after the configure
phase so that all file-modifying phases are performed after unpacking.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Paul A. Patience |
| 2021-07-20 | gnu: cl-authentic: Update to 0.1.2-2.4e9194d....* gnu/packages/lisp-xyz.scm (sbcl-authentic): Update to 0.1.2-2.4e9194d.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Charles |
| 2021-07-19 | gnu: icedove: Update to 78.12.0 [security fixes]....Fixes CVE-2021-29969 and CVE-2021-29976.
* gnu/packages/gnuzilla.scm (icedove): Update to 78.12.0.
| Jonathan Brielmaier |
| 2021-07-19 | gnu: Add searx....* gnu/packages/search.scm (searx): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Vinicius Monego |
| 2021-07-19 | gnu: Add python-langdetect....* gnu/packages/python-xyz.scm (python-langdetect): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Vinicius Monego |
| 2021-07-19 | gnu: Add nomad-optimizer....* gnu/packages/maths.scm (nomad-optimizer): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Paul A. Patience |
| 2021-07-19 | gnu: Add python-pyhull....* gnu/packages/python-xyz.scm (python-pyhull): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Franck Pérignon |
| 2021-07-19 | gnu: visidata: Update to 2.5....* gnu/packages/visidata.scm (visidata): Update to 2.5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ryan Prior |
| 2021-07-19 | gnu: Add emacs-jupyter....* gnu/packages/emacs-xyz.scm (emacs-jupyter): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Vinicius Monego |
| 2021-07-19 | gnu: Add emacs-zmq....* gnu/packages/emacs-xyz.scm (emacs-zmq): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Vinicius Monego |
