| Age | Commit message (Expand) | Author |
|---|
| 2023-04-29 | gnu: r-affyrnadegradation: Update to 1.46.0....* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.46.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-affyplm: Update to 1.76.0....* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.76.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-affylmgui: Update to 1.74.0....* gnu/packages/bioconductor.scm (r-affylmgui): Update to 1.74.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-affyilm: Update to 1.52.0....* gnu/packages/bioconductor.scm (r-affyilm): Update to 1.52.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-affixcan: Update to 1.18.0....* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.18.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-adsplit: Update to 1.70.0....* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.70.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-adimpute: Update to 1.10.0....* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.10.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-adamgui: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.16.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-adam: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-adam): Update to 1.16.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-adacgh2: Update to 2.40.0....* gnu/packages/bioconductor.scm (r-adacgh2): Update to 2.40.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-absseq: Update to 1.54.0....* gnu/packages/bioconductor.scm (r-absseq): Update to 1.54.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-abarray: Update to 1.68.0....* gnu/packages/bioconductor.scm (r-abarray): Update to 1.68.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-missmethyl: Update to 1.34.0....* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.34.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-shiny: Update to 1.7.4....* gnu/packages/cran.scm (r-shiny): Update to 1.7.4.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-glimma: Update to 2.10.0....* gnu/packages/bioconductor.scm (r-glimma): Update to 2.10.0.
[source]: Delete minified JavaScript files.
[arguments]: Add 'process-javascript phase.
[native-inputs]: Add esbuild.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-reportingtools: Update to 2.39.0....* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.39.0.
[source]: Delete minified JavaScript files.
[arguments]: Add 'process-javascript phase.
[native-inputs]: Add source code for jquery 1.8.0.
| Ricardo Wurmus |
| 2023-04-29 | gnu: Add r-densvis....* gnu/packages/bioconductor.scm (r-densvis): New variable.
| Ricardo Wurmus |
| 2023-04-29 | gnu: r-with-tests: Update to 4.3.0....* gnu/packages/statistics.scm (r-with-tests): Update to 4.3.0.
[arguments]: Move 'set-timezone before 'configure.
| Ricardo Wurmus |
| 2023-04-29 | gnu: libpotassco: Unbundle catch....This patch incidentally fixes a build failure caused by the bundled catch.
* gnu/packages/potassco.scm (libpotassco)[source]: Unbundle catch.
[native-inputs]: Add catch2-1.
| Liliana Marie Prikler |
| 2023-04-28 | gnu: libexpected: Update to 1.1.0....* gnu/packages/patches/libexpected-use-provided-catch2.patch: Add new patch.
* gnu/packages/patches/libexpected-nofetch.patch: Remove unused patch.
* gnu/local.mk (dist_patch_DATA): Register changes.
* gnu/packages/cpp.scm (libexpected): Update to 1.1.0, and use new patch.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Josselin Poiret |
| 2023-04-28 | gnu: fwupd: Update to 1.8.14....* gnu/packages/firmware.scm (fwupd): Update to 1.8.14. Also, change two
files' timestamp because they are zipped up by Python.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Josselin Poiret |
| 2023-04-28 | gnu: maven-embedder: Fix build....* gnu/packages/maven (maven-embedder)[arguments]:
Add the'add-sisu-shebang phase after unpack.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Aleksandr Vityazev |
| 2023-04-28 | gnu: maven-core-bootstrap: Fix build....* gnu/packages/maven (maven-core-bootstrap)[arguments]:
Add the'add-sisu-shebang phase after unpack.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Aleksandr Vityazev |
| 2023-04-28 | gnu: maven-resolver-provider: Fix build....* gnu/packages/maven (maven-resolver-provider)[arguments]:
Add the'add-sisu-shebang phase after unpack.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Aleksandr Vityazev |
| 2023-04-28 | gnu: maven-model-builder: Fix build....* gnu/packages/maven (maven-model-builder)[arguments]:
Add the'add-sisu-shebang phase after unpack.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Aleksandr Vityazev |
| 2023-04-28 | gnu: maven-settings-builder: Fix build....* gnu/packages/maven (maven-settings-builder)[arguments]:
Add the'add-sisu-shebang phase after unpack.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Aleksandr Vityazev |
| 2023-04-28 | gnu: Fix supercollider....Message-Id: <f67786eb958a65ba778f67a8f443fa3d24293438.1682453413.git.gabriel@erlikon.ch>
From: Gabriel Wicki <gabriel@erlikon.ch>
Date: Tue, 25 Apr 2023 22:03:03 +0200
Subject: [PATCH 1/2] gnu: Fix supercollider.
* gnu/packages/audio.scm (supercollider): Fix the build.
[configure-flags] Re-enable DLIBSCSYNTH.
[phases] New phase fix-struct-SOUNDFILE-tag.
[inputs] Add ruby and python to appease the build process.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Gabriel Wicki |
| 2023-04-28 | gnu: dovecot: Fix build....* gnu/packages/mail.scm (dovecot)[source]: Add patch for OpenSSL v3.
* gnu/packages/patches/dovecot-opensslv3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
| 宋文武 |
| 2023-04-28 | gnu: mumble: Update to 1.4.287, fix build....* gnu/packages/telephony.scm (mumble): Update to 1.4.287.
[inputs]: Use openssl-1.1.
| 宋文武 |
| 2023-04-28 | gnu: python-ipy: Update to 1.01....* gnu/packages/networking.scm (python-ipy): Update to 1.01.
| 宋文武 |
| 2023-04-27 | gnu: ncdu-1: Update to 1.18.1....* gnu/packages/ncdu.scm (ncdu-1): Update to 1.18.1.
| Efraim Flashner |
| 2023-04-27 | gnu: sleef: Adjust inputs....* gnu/packages/maths.scm (sleef)[inputs]: Replace openssl with openssl-1.1;
remove mpfr.
[arguments]: Remove custom phase 'make-git-checkout-writable; use G-expression
for configure-flags.
| Ricardo Wurmus |
| 2023-04-27 | gnu: gloo: Use OpenSSL 1.1....* gnu/packages/machine-learning.scm (gloo)[inputs]: Use openssl-1.1 instead of
openssl.
| Ricardo Wurmus |
| 2023-04-27 | gnu: yubico-piv-tool: Update to 2.3.1....* gnu/packages/security-token.scm (yubico-piv-tool): Update to 2.3.1.
[source]: Fetch from Github repository.
[build-system]: Use cmake-build-system.
| Ricardo Wurmus |
| 2023-04-27 | gnu: Add cl-prompter....* gnu/packages/lisp-xyz.scm (cl-prompter, ecl-prompter, sbcl-prompter): New variables.
| Pierre Neidhardt |
| 2023-04-27 | gnu: python-docutils-0.15: Add missing input....* gnu/packages/python-xyz.scm (python-docutils-0.15)[native-inputs]: Add
python-setuptools-57.
| Ricardo Wurmus |
| 2023-04-27 | gnu: gdcm: Disable dependent tests....* gnu/packages/bioinformatics.scm (gdcm)[arguments]: Disable tests that depend
on the output of a disabled test.
| Ricardo Wurmus |
| 2023-04-27 | gnu: freebayes: Update to 1.3.7....* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.7.
[arguments]: Do not use "grep -P" in tests; drop trailing #T.
| Ricardo Wurmus |
| 2023-04-27 | gnu: vcflib: Use libwfa2.pc....* gnu/packages/bioinformatics.scm (vcflib)[source]: Use pkg-config to look for
libwfa2.
[inputs]: Move wfa2-lib from here...
[propagated-inputs]: ...to here.
[arguments]: Drop WFA_LINK_LIBRARIES option; fix typo in build phase name;
patch IntervalTree.h includes; add libwfa2 to pkg-config file.
| Ricardo Wurmus |
| 2023-04-27 | gnu: wfa2-lib: Install pkg-config file....* gnu/packages/bioinformatics.scm (wfa2-lib)[arguments]: Install libwfa2.pc.
| Ricardo Wurmus |
| 2023-04-27 | gnu: express: Adjust bamtools location....* gnu/packages/bioinformatics.scm (express)[arguments]: Modify location of
libbamtools.so in 'use-shared-boost-libs-and-set-bamtools-paths; drop trailing
#T.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-tinycss2: Simplify....* gnu/packages/python-web.scm (python-tinycss2)[build-system]: Use
pyproject-build-system.
[arguments]: Remove.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-openapi-core: Add missing input....* gnu/packages/python-web.scm (python-openapi-core)[build-system]: Use
pyproject-build-system.
[arguments]: Do not override 'check phase; specify #:test-flags.
[native-inputs]: Add python-mock.
| Ricardo Wurmus |
| 2023-04-27 | gnu: libwebsockets: Update to 4.3.2....* gnu/packages/web.scm (libwebsockets): Update to 4.3.2.
[arguments]: Remove.
[source]: Use GIT-FILE-NAME.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-google-cloud-storage: Add missing input....* gnu/packages/python-web.scm (python-google-cloud-storage)[native-inputs]:
Add python-mock.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-google-resumable-media: Add missing input....* gnu/packages/python-web.scm (python-google-resumable-media)[native-inputs]:
Add python-mock.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-aws-xray-sdk: Update to 2.12.0....* gnu/packages/python-web.scm (python-aws-xray-sdk): Update to 2.12.0.
[build-system]: Use pyproject-build-system.
[arguments]: Specify #:test-flags; do not override 'check phase; add
'pre-check phase.
[native-inputs]: Add python-httpx, python-mock, python-pytest-asyncio, and
python-pytest-benchmark.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-httpx: Update to 0.24.0....* gnu/packages/python-web.scm (python-httpx): Update to 0.24.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom check phase in favor of specifying #:test-flags.
[native-inputs]: Add python-hatchling and python-hatch-fancy-pypi-readme.
(python-httpx-bootstrap)[native-inputs]: Add python-hatchling and
python-hatch-fancy-pypi-readme.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-httpcore: Update to 0.17.0....* gnu/packages/python-web.scm (python-httpcore): Update to 0.17.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom check phase; specify #:test-flags; disable broken
tests.
| Ricardo Wurmus |
| 2023-04-27 | gnu: python-h11: Update to 0.14.0....* gnu/packages/python-web.scm (python-h11): Update to 0.14.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
| Ricardo Wurmus |
