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2024-01-01gnu: r-ggeffects: Update to 1.3.4....* gnu/packages/cran.scm (r-ggeffects): Update to 1.3.4. Change-Id: I30d18c4aef8494dc49e0149f2ca5f7276c49b840 Ricardo Wurmus
2024-01-01gnu: r-tmb: Update to 1.9.10....* gnu/packages/cran.scm (r-tmb): Update to 1.9.10. Change-Id: I698e60a2f79fb84452b02e9d78053621c5aa8398 Ricardo Wurmus
2024-01-01gnu: r-emmeans: Update to 1.9.0....* gnu/packages/cran.scm (r-emmeans): Update to 1.9.0. Change-Id: I078b8023106b085716444240b6e49edafce30592 Ricardo Wurmus
2024-01-01gnu: r-sandwich: Update to 3.1-0....* gnu/packages/cran.scm (r-sandwich): Update to 3.1-0. Change-Id: Ibe33dfa1bcdb1c8fac8f46131042d4829ac12a9e Ricardo Wurmus
2024-01-01gnu: r-quickjsr: Update to 1.0.9....* gnu/packages/cran.scm (r-quickjsr): Update to 1.0.9. Change-Id: Ia7ce3d44b71d5d2493f2dcebbcdf55fa7a9cea98 Ricardo Wurmus
2024-01-01gnu: r-targets: Update to 1.4.0....* gnu/packages/cran.scm (r-targets): Update to 1.4.0. Change-Id: Id2912083268d8021e99ce58b452b87505cd14f5e Ricardo Wurmus
2024-01-01gnu: r-magick: Update to 2.8.2....* gnu/packages/cran.scm (r-magick): Update to 2.8.2. Change-Id: Ibdba20895ea4934b047ec1cc463a7edd3e46806c Ricardo Wurmus
2024-01-01gnu: r-mixsqp: Update to 0.3-54....* gnu/packages/cran.scm (r-mixsqp): Update to 0.3-54. Change-Id: I92fa69bf895833f8ba6b68cbcc933c1e6cb170a0 Ricardo Wurmus
2024-01-01gnu: r-dofuture: Update to 1.0.1....* gnu/packages/cran.scm (r-dofuture): Update to 1.0.1. Change-Id: If6bb0ca6c3d9bc788a7166dd09b8a9e908d75870 Ricardo Wurmus
2024-01-01gnu: r-seriation: Update to 1.5.4....* gnu/packages/cran.scm (r-seriation): Update to 1.5.4. Change-Id: I33dd04e9ef572e0731634149da3b0af0ee66929a Ricardo Wurmus
2024-01-01gnu: r-timeseries: Update to 4032.108....* gnu/packages/cran.scm (r-timeseries): Update to 4032.108. Change-Id: I9fd9ae02405dd4c25beb4da7876ac9ff1f13278c Ricardo Wurmus
2024-01-01gnu: r-ggridges: Update to 0.5.5....* gnu/packages/cran.scm (r-ggridges): Update to 0.5.5. Change-Id: Ife748b75a0132b35020bfec0d58851e529aa2ebe Ricardo Wurmus
2024-01-01gnu: r-ucminf: Update to 1.2.1....* gnu/packages/cran.scm (r-ucminf): Update to 1.2.1. Change-Id: I8008943c653e2ce1c998353aeef383f5a79332b1 Ricardo Wurmus
2024-01-01gnu: r-recipes: Update to 1.0.9....* gnu/packages/cran.scm (r-recipes): Update to 1.0.9. Change-Id: Ia73c9091f6d45f1690a4bfcae014e9571b317182 Ricardo Wurmus
2024-01-01gnu: r-psych: Update to 2.3.12....* gnu/packages/cran.scm (r-psych): Update to 2.3.12. Change-Id: I7bb3783e4df94655ab4d71bc6e14303691e39500 Ricardo Wurmus
2024-01-01gnu: r-timedate: Update to 4032.109....* gnu/packages/cran.scm (r-timedate): Update to 4032.109. Change-Id: Ib9718ee4e9c35182e892c23fa5b930ab71489acd Ricardo Wurmus
2024-01-01gnu: r-bindrcpp: Update to 0.2.3....* gnu/packages/cran.scm (r-bindrcpp): Update to 0.2.3. Change-Id: I6cde68e383bb776bfe18fe82cb3075a1ceb0c4f4 Ricardo Wurmus
2024-01-01gnu: r-gensa: Update to 1.1.12....* gnu/packages/cran.scm (r-gensa): Update to 1.1.12. Change-Id: I5be3cff03ad8edfc7f635a349f85570f9c4dfd2e Ricardo Wurmus
2024-01-01gnu: r-maps: Update to 3.4.2....* gnu/packages/cran.scm (r-maps): Update to 3.4.2. Change-Id: Id5063b752e807e6bbba40e52894c1a92917f8799 Ricardo Wurmus
2024-01-01gnu: r-servr: Update to 0.28....* gnu/packages/cran.scm (r-servr): Update to 0.28. Change-Id: If6af9c2b2902039434ca858853de01bd59975ba5 Ricardo Wurmus
2024-01-01gnu: r-rticles: Update to 0.26....* gnu/packages/cran.scm (r-rticles): Update to 0.26. Change-Id: I5c2c25477990a87c3b1cec7f7830cddb862d2b6a Ricardo Wurmus
2024-01-01gnu: r-datawizard: Update to 0.9.1....* gnu/packages/cran.scm (r-datawizard): Update to 0.9.1. Change-Id: I91de1685b889eb516204499c6e21c0fb1475ea13 Ricardo Wurmus
2024-01-01gnu: r-aod: Update to 1.3.3....* gnu/packages/cran.scm (r-aod): Update to 1.3.3. Change-Id: Ifcf95c006c6adc76197cba6ab8dbb8234bf5c1cd Ricardo Wurmus
2024-01-01gnu: r-ggvenndiagram: Update to 1.4.9....* gnu/packages/cran.scm (r-ggvenndiagram): Update to 1.4.9. [propagated-inputs]: Add r-aplot, r-forcats, and r-tidyr; remove r-magrittr, r-plotly, r-purrr, r-rvenn, r-sf, and r-yulab-utils. Change-Id: I7e1f701e893aff8d75fa9de46d4f451cfa98f820 Ricardo Wurmus
2024-01-01gnu: r-diversitree: Update to 0.10-0....* gnu/packages/cran.scm (r-diversitree): Update to 0.10-0. [native-inputs]: Remove gfortran. Change-Id: Ie54ba8374d85b66d712d2c50d7ad1f05edc01b75 Ricardo Wurmus
2024-01-01gnu: r-radiant-data: Update to 1.6.3....* gnu/packages/cran.scm (r-radiant-data): Update to 1.6.3. [source]: Do not delete help files, because they are now under CC-BY-SA. [arguments]: Simplify by using minify-build-system. Change-Id: Ic4a2bdd3a8df9f27d703505eaeba080e28982c80 Ricardo Wurmus
2024-01-01gnu: r-shiny: Update to 1.8.0....* gnu/packages/cran.scm (r-shiny): Update to 1.8.0. [arguments]: Do not use quasiquote for argument list. Change-Id: Id36b3168a13a254e26cda30d7eaa45874d40c4e3 Ricardo Wurmus
2024-01-01gnu: r-torch: Update to 0.12.0....* gnu/packages/cran.scm (r-torch): Update to 0.12.0. [propagated-inputs]: Add r-jsonlite and r-safetensors. Change-Id: I7d35b494640159975485846416e03630c7cd451f Ricardo Wurmus
2024-01-01gnu: liblantern: Update to 0.11.0-1.4d83bd0....* gnu/packages/machine-learning.scm (liblantern): Update to 0.11.0-1.4d83bd0. Change-Id: I04ac3d64df8ec3b4ba628886640020a24361f4e3 Ricardo Wurmus
2024-01-01gnu: python-pytorch-for-r-torch: Update to 2.0.1....* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Update to 2.0.1. * gnu/packages/patches/python-pytorch2-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Change-Id: I97551d543e50f6e511aa0529c097d156cf3f96de Ricardo Wurmus
2024-01-01gnu: Add onnx-optimizer-for-torch2....* gnu/packages/machine-learning.scm (onnx-optimizer-for-torch2): New variable. Change-Id: Icf48cba3f0a30f171b6f01cd033dd135a078ba1a Ricardo Wurmus
2024-01-01gnu: Add onnx-for-torch2....* gnu/packages/machine-learning.scm (onnx-for-torch2): New variable. * gnu/packages/patches/onnx-1.13.1-use-system-googletest.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Change-Id: I8a46b9a8096a33bcf949bc4f5d497e22902ab301 Ricardo Wurmus
2024-01-01gnu: python-protobuf: Update to 3.20.2....* gnu/packages/protobuf.scm (python-protobuf): Update to 3.20.2. Change-Id: Ic7a0f199f522ebf1e62e9179b4a7e4223594299c Ricardo Wurmus
2024-01-01gnu: Add r-safetensors....* gnu/packages/cran.scm (r-safetensors): New variable. Change-Id: I40bcee87cdbba9776f3448a2567f94ebb1e652b9 Ricardo Wurmus
2024-01-01gnu: Add xnnpack-for-torch2....* gnu/packages/machine-learning.scm (xnnpack-for-torch2): New variable. * gnu/packages/patches/xnnpack-for-torch2-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Change-Id: I1c35f5fbd064fcc6732b924d7cafaa1a7d03ce04 Ricardo Wurmus
2024-01-01gnu: r-rmpi: Update to 0.7-2....* gnu/packages/cran.scm (r-rmpi): Update to 0.7-2. [properties]: Specify updater-extra-inputs. [arguments]: Use G-expression. Change-Id: Ic15015bf181ae1e7689b7c81a3bf11258e2df946 Ricardo Wurmus
2024-01-01gnu: r-littler: Update to 0.3.19....* gnu/packages/cran.scm (r-littler): Update to 0.3.19. [properties]: Specify updater-extra-inputs. [native-inputs]: Remove pkg-config. Change-Id: Ic152e560fa9f5609aebc8c4a68a60265b7626bcb Ricardo Wurmus
2024-01-01gnu. josm. Update to 18907....* gnu/packages/geo.scm (josm): Update to 18907. Change-Id: Ica61eabb49489bc5716b2b0bd029bbffcb7f84d3 Julien Lepiller
2024-01-01gnu: Add java-jakarta-annotations-api....* gnu/packages/java.scm (java-jakarta-annotations-api): New variable. Change-Id: I374d1be6f1c509c9c6391e0551de5362eae13357 Julien Lepiller
2024-01-01gnu: Add neovim-coqtail....* gnu/packages/vim.scm (neovim-coqtail): New variable. Change-Id: I431571925da02788410fc8bf3b1e1aea93bcb1bb Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jean-Pierre De Jesus DIAZ
2024-01-01gnu: vim-coqtail: Allow using neovim for tests....* gnu/packages/vim.scm (vim-coqtail): Allow using neovim for tests. Change-Id: I114b07dd9cf525a5571a37f51b2e6b2a57d5be46 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jean-Pierre De Jesus DIAZ
2024-01-01gnu: vim-coqtail: Move vim-full to arguments....* gnu/packages/vim.scm (vim-coqtail)[arguments]: Set #:vim to use vim-full. Adjust custom 'check phase accordingly. [native-inputs]: Remove vim-full. Remove input labels. Change-Id: I20cc1e0772727f8fc7db70b42151432fb6349fc7 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jean-Pierre De Jesus DIAZ
2024-01-01gnu: Add neovim-vader....* gnu/packages/vim.scm (neovim-vader): New variable. Change-Id: Ib507c2086c31a42088f3f433b57ac1e345e27113 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jean-Pierre De Jesus DIAZ
2024-01-01gnu: vim-vader: Allow using neovim for tests....* gnu/packages/vim.scm (vim-vader): Allow using neovim for tests. Change-Id: Id5b4423f24fdd42814b0a0e3fab801ec871611f7 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jean-Pierre De Jesus DIAZ
2024-01-01gnu: gccgo-12: Fix building with 1 core....* gnu/packages/gcc.scm (make-gccgo)[arguments]: When building gccgo-12 or higher add a phase to build libbacktrace before libgo. Change-Id: I9bb225b58ffa439f9461e4126f51ab453683efbe Efraim Flashner
2023-12-31gnu: go-1.21: Update to 1.21.5....* gnu/packages/golang.scm (go-1.21): Update to 1.21.5. Change-Id: Ie7d275e698c3884c93d7618d99859d6019fa8893 John Kehayias
2023-12-31gnu: Add the Go standard library 1.21....* gnu/packages/golang.scm (go-std-1.21): New variable. Co-authored-by: VÖRÖSKŐI András <voroskoi@gmail.com> Change-Id: I8f26611fc5a9398d915e74d3e55a0f0310b27133 John Kehayias
2023-12-31gnu: Add go-1.21....* gnu/packages/golang.scm (go-1.21): New variable. Signed-off-by: John Kehayias <john.kehayias@protonmail.com> Change-Id: Ifa9fa61ed1ae49831621bdbabd530d29f6fa164a Katherine Cox-Buday
2023-12-31gnu: jq: Update to 1.7.1 [security fixes]....Fixes CVE-2023-50246 and CVE-2023-50268. * gnu/packages/web.scm (jq): Update to 1.7.1. Change-Id: I21999732036c76faea711e0484fa8c0d75d8736f Signed-off-by: John Kehayias <john.kehayias@protonmail.com> Timotej Lazar
2023-12-31gnu: go-github-com-stretchr-testify-bootstrap: Move to golang-check.scm...* gnu/packages/golang.scm (go-github-com-stretchr-testify-bootstrap): Move from here ... * gnu/packages/golang-check.scm: ... to here. Change-Id: Iaa32e1c17a0e5a372613302e5e7fbf8de4d9572a Efraim Flashner