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2023-05-08gnu: guile-openai: Update to 0.1-2.9265b64.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-openai): Update to 0.1-2.9265b64.
2023-05-08gnu: Add homer.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (homer): New variable.
2023-05-08gnu: python-bleach: Don't vendor python-html5lib.Efraim Flashner
* gnu/packages/python-xyz.scm (python-bleach)[source]: Add snippet to remove vendored library and references to it. [propagated-inputs]: Add python-html5lib.
2023-05-08gnu: python-bleach: Update to 5.0.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-bleach): Update to 5.0.1. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase.
2023-05-08gnu: Add r-seurat5.Ricardo Wurmus
* gnu/packages/cran.scm (r-seurat5): New variable.
2023-05-08gnu: Add r-seurat5object.Ricardo Wurmus
* gnu/packages/cran.scm (r-seurat5object): New variable.
2023-05-08gnu: python-bottleneck: Honor #:tests? flag.Efraim Flashner
* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust custom 'check phase to honor the #:tests? flag.
2023-05-08gnu: python-bottleneck: Update to 1.3.7.Efraim Flashner
* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7.
2023-05-08gnu: python-astropy: Update to 5.2.2.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy): Update to 5.2.2. [arguments]<phases>{check}: Skip 2 more failing tests. [native-inputs]: Add python-colorlog, python-h5py, python-pandas, python-pyarrow, python-pytest-astropy-header, python-scikit-image, python-scipy, python-timezonefinder. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-pytest-mpl: Update to 0.16.1.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-mpl): Update to 0.16.1. [build-system]: Use pyproject-build-system. [arguments]<phases>: Simplify phases by removing redundant modification and use <test-flags> instead. [propagated-inputs]: Add python-jinja2, python-packaging. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-pytest-arraydiff: Update to 0.5.0.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-arraydiff): Update to 0.5.0. [native-inputs]: Add python-setuptools-scm. [propagated-inputs]: Remove python-six. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-pytest-remotedata: Update to 0.4.0.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-remotedata): Update to 0.4.0. [build-system]: Use pyproject-build-system. [arguments]<phases>: Simplify by removing not required phase modification and use <test-flags> instead. [native-inputs]: Add python-setuptools-scm. [propagated-inputs]: Delete python-six, add python-packaging. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-skyfield: Update to 1.46.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-skyfield): Update to 1.46. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-jplephem: Update to 2.18.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-jplephem): Update to 2.18. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-extension-helpers: Update to 1.0.0.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-extension-helpers): Update to 1.0.0. [build-system]: Use pyproject-build-system. [arguments]<tests>: Disable them, as pytest can't load the test suite. [native-inputs]: Add python-setuptools-scm. [home-page]: Re-point to actual project home page. [synopsis]: Adjust it to cover actual project. [description]: ... as above. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-pytest-astropy: Simplify package.Sharlatan Hellseher
* gnu/package/python-check.scm (python-pytest-astropy): Simplify package. [arguments]<phases>: Remove remove-requirement phase. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-pytest-filter-subpackage: Update to 0.1.2.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-filter-subpackage): Update to 0.1.2. [build-system]: Use pyproject-build-system. [arguments]: Drop no more required phases. [native-inputs]: Add python-setuptools-scm. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: Add python-timezonefinder.Sharlatan Hellseher
* gnu/packages/time.scm (python-timezonefinder): New variable. * gnu/packages/geo.scm (h3-3, python-h3-3): New variables. The latest compatible versions to build python-timezonefinder. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: Add python-h3.Sharlatan Hellseher
* gnu/packages/geo.scm (python-h3): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: Sort use-module alphabetically in (gnu packages geo).Sharlatan Hellseher
* gnu/packages/geo.scm: Sort use-module alphabetically to ease maintenance. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: Add h3.Sharlatan Hellseher
* gnu/packages/geo.scm (h3): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-pytest-doctestplus: Update to 0.12.1.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-doctestplus): Update to 0.12.1. [build-system]: Use pyproject-build-system. [arguments]<phases>: Remove modify-phases and add test-flags option instead. [native-inputs]: Add python-numpy. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: tio: Update to 2.5.Raphaël Mélotte
* gnu/packages/terminals.scm (tio): Update to 2.5. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: openttd-engine: Update to 13.1.Yovan Naumovski
* gnu/packages/games.scm (openttd-engine): Update to 13.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: Add r-multibac.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-multibac): New variable.
2023-05-07gnu: nss-certs: Update to 3.88.1.Maxim Cournoyer
* gnu/packages/certs.scm (nss-certs): Update to 3.88.1.
2023-05-07gnu: libva-utils: Update home page.Maxim Cournoyer
* gnu/packages/video.scm (libva-utils) [home-page]: Update URL.
2023-05-07gnu: vdpauinfo: Update to 1.5.Maxim Cournoyer
* gnu/packages/video.scm (vdpauinfo): Update to 1.5.
2023-05-07gnu: libva-utils: Update to 2.18.1.Maxim Cournoyer
* gnu/packages/video.scm (libva-utils): Update to 2.18.1.
2023-05-07gnu: libva: Update to 2.18.0.Maxim Cournoyer
* gnu/packages/video.scm (libva): Update to 2.18.0.
2023-05-07gnu: mesa: Update to 23.0.3.Kaelyn Takata
* gnu/packages/gl.scm (mesa): Update to 23.0.3. [source]: Remove obsolete patch and update HTTPS url. [arguments]: Enable the crocus gallium driver. * gnu/packages/patches/mesa-fix-sporadic-test-failures.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2023-05-07gnu: mesa: Use gexps instead of quasiquote.Kaelyn Takata
* gnu/packages/gl.scm (mesa)[arguments]: Use gexps instead of quasiquote. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-05-07gnu: mesa: Fix hardware video decoding.Kaelyn Takata
* gnu/packages/gl.scm (mesa): Fix hardware video decoding. [arguments]: Add -Dvideo-codecs to the #:configure-flags [native-search-paths]: Add VDPAU_DRIVER_PATH so libvdpau can find the drivers. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-05-07gnu: mesa: Fix library paths in Vulkan layer manifests.Kaelyn Takata
* gnu/packages/gl.scm (mesa): Fix library paths in Vulkan layer manifests. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-05-07gnu: tree-sitter-cli: Fix build with 0.20.8 version.Pierre Langlois
* gnu/packages/tree-sitter.scm (tree-sitter-cli)[arguments] <#:cargo-inputs>: Update rust-tiny-http and rust-webbrowser. <#:cargo-development-inputs>: Add rust-ctor, rust-rand, rust-tempfile and rust-unindent. <#:phases>: Remove unneeded 'delete-cargo-lock phase. Modified-by: Efraim Flashner <efraim@flashner.co.il> Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-07gnu: Add rust-webbrowser-0.8.Pierre Langlois
* gnu/packages/crates-io.scm (rust-webbrowser-0.8): New variable. (rust-webbrowser-0.5): Inherit from rust-webbrowser-0.8. * gnu/packages/patches/rust-webbrowser-remove-unsupported-os.patch: New file. * gnu/local.mk: Register it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-07gnu: Update rust-tiny-http to 0.12.0.Pierre Langlois
* gnu/packages/crates-io.scm (rust-tiny-http-0.8): Rename to... (rust-tiny-http-0.12): ... this. [arguments]: Remove rust-chrono and rust-url dependencies, add rust-httparse, httpdate, rustls and rustls-pemfile. (rust-tiny-http-0.6): Inherit from rust-tiny-http-0.12. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-07gnu: librsvg-for-system: Choose librsvg based on package support.Efraim Flashner
* gnu/packages/gnome.scm (librsvg-for-system): Adjust the logic to choose which librsvg based on which version is supported.
2023-05-07gnu: rust: Re-enable aarch64-linux support.Efraim Flashner
* gnu/packages/rust.scm (rust)[arguments]: Only enable parallel-builds on x86_64-linux. Add a make-flag to adjust CFLAGS. In the custom 'build phase remove an unneeded environment variable. [supported-architectures]: Add aarch64-linux.
2023-05-07gnu: gdb/pinned: Move to gdb-12.1.Efraim Flashner
* gnu/packages/gdb.scm (gdb/pinned): Refer to gdb-12.1. [properties]: Hide the package. (gdb-12): Inherit from gdb/pinned.
2023-05-07gnu: rust-gmp-mpfr-sys-1: Remove bundled libraries.Efraim Flashner
* gnu/packages/crates-io.scm (rust-gmp-mpfr-sys-1)[source]: Add snippet to remove bundled libraries and build without them. [arguments]: Remove custom phase to help build bundled libraries. [native-inputs]: Remove bash-minimal, m4. [inputs]: Add gmp, mpc, mpfr. (rust-rug-1)[arguments]: Remove custom phase to help build bundled libraries. [native-inputs]: Remove bash-minimal, m4. [inputs]: Add gmp, mpc, mpfr.
2023-05-07gnu: rust-hashbrown-0.8: Update to 0.8.2.Efraim Flashner
* gnu/packages/crates-io.scm (rust-hashbrown-0.8): Update to 0.8.2. [source]: Add snippet to allow newer versions of rustc-hash. [cargo-inputs]: Add rust-autocfg-1.
2023-05-07gnu: rust-globwalk-0.8: Build with newer rust-backtrace.Efraim Flashner
* gnu/packages/crates-io.scm (rust-globwalk-0.8)[source]: Add snippet to accept newer versions of rust-backtrace. [cargo-development-inputs]: Replace rust-backtrace-0.3.35 with 0.3. (rust-backtrace-0.3.35): Remove variable.
2023-05-07gnu: rust-webpki-0.18: Fix build.Efraim Flashner
* gnu/packages/crates-io.scm (rust-webpki-0.18)[inherit]: Inherit from rust-webpki-0.19. [arguments]: Add a phase to build the curve25519 tables.
2023-05-07gnu: rust-webpki-0.19: Fix build.Efraim Flashner
* gnu/packages/crates-io.scm (rust-webpki-0.19)[arguments]: Add a phase to build the curve25519 tables. [native-inputs]: Add clang, perl, python-2.
2023-05-07gnu: rust-sct-0.5: Fix build.Efraim Flashner
* gnu/packages/crates-io.scm (rust-sct-0.5)[arguments]: Add a phase to build the curve25519 tables. [native-inputs]: Add clang, perl, python-2.
2023-05-07gnu: rust-ct-logs-0.8: Add missing input.Efraim Flashner
* gnu/packages/crates-io.scm (rust-ct-logs-0.8)[native-inputs]: Add perl.
2023-05-07gnu: rust-tokio-rustls-0.23: Add missing input.Efraim Flashner
* gnu/packages/crates-io.scm (rust-tokio-rustls-0.23)[native-inputs]: Add perl.
2023-05-07gnu: rust-trust-dns-rustls-0.19: Add missing input.Efraim Flashner
* gnu/packages/crates-io.scm (rust-trust-dns-rustls-0.19) [native-inputs]: Add perl.
2023-05-07gnu: rust-password-hash-0.3: Fix inputs.Efraim Flashner
* gnu/packages/crates-io.scm (rust-password-hash-0.3)[arguments]: Don't skip build. [cargo-inputs]: Replace rust-base64ct-1 with 1.0.1.
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