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2018-12-04gnu: pigx-rnaseq: Update to 0.0.5....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.5. [inputs]: Replace snakemake-4 with snakemake. Ricardo Wurmus
2018-12-04gnu: pari-gp: Update to 2.11.1....* gnu/packages/algebra.scm (pari-gp): Update to 2.11.1. Andreas Enge
2018-12-04gnu: emacs-irony-mode: Fetch source using git....* gnu/packages/emacs.scm (emacs-irony-mode)[source]: Rewrite in terms of GIT-FETCH. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Tim Gesthuizen
2018-12-04gnu: enlightenment: Use absolute path to 'edje_cc'....* gnu/packages/enlightenment.scm (enlightenment)[arguments]: In 'set-system-actions', set absolute file name to 'edje_cc'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timo Eisenmann
2018-12-04gnu: fenics: Skip extra demo in 'check' phase....* gnu/packages/simulation.scm (fenics)[arguments]: Add 'curl-curl' demo to list of demos that require meshes supplied by git-lfs. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul Garlick
2018-12-04gnu: petsc-openmpi: Configure with support for HYPRE preconditioner....* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi. [arguments]: Add 'with-hypre=1' flag. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul Garlick
2018-12-04Remove most references to hydra.gnu.org....* Makefile.am (assert-binaries-available): Don't mention hydra.gnu.org in comment. * build-aux/check-available-binaries.scm: Likewise. * build-aux/check-final-inputs-self-contained.scm: Likewise. * doc/guix.texi (SUBSTITUTE-SERVER): New variable. Use it throughout instead of "mirror.hydra.gnu.org". * doc/contributing.texi (Submitting Patches): Likewise. * gnu/services/base.scm (hydra-key-authorization) (guix-activation): Remove mentions of "hydra.gnu.org" in comments and messages. * gnu/system/install.scm (%installation-services): Likewise. * guix/scripts/size.scm (guix-size): Likewise. Ludovic Courtès
2018-12-04gnu: dolphin-emu: Update to commit 2c57e70....* gnu/packages/emulators.scm (dolphin-emu): Update to commit 2c57e70. Rutger Helling
2018-12-04services: ddclient: Fix unrecognized keywords....This patch fixes warnings about unrecognized keywords in logs. * gnu/services/dns.scm (serialize-field): Skip some field names. Oleg Pykhalov
2018-12-03gnu: Beets: Update to 1.4.7....* gnu/packages/music.scm (beets): Update to 1.4.7. Leo Famulari
2018-12-03gnu: python-unidecode: Update to 1.0.23....* gnu/packages/python.scm (python-unidecode, python2-unidecode): Update to 1.0.23. Leo Famulari
2018-12-03gnu: Beets: Fix compatibility with Python 3.7....* gnu/packages/patches/beets-python-3.7-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/music.scm (beets)[source]: Use it. Leo Famulari
2018-12-03gnu: Add hnsd....Thank you, Handshake! * gnu/packages/dns.scm (hnsd): New variable. Ludovic Courtès
2018-12-03gnu: python-cryptography: Update to 2.4.2....* gnu/packages/python-crypto.scm (python-cryptography-vectors, python-cryptography): Update to 2.4.2. Marius Bakke
2018-12-03gnu: python-statsmodels: Update to 0.9.0....* gnu/packages/statistics.scm (python-statsmodels): Update to 0.9.0. [arguments]: Remove obsolete workaround. Marius Bakke
2018-12-03gnu: python-scikit-learn: Update source hash....The upstream git tag moved from 6ccb5e44b188059e9b7459ac02ec97e32a9ab7ba to 55bf5d93e5674f13a1134d93a11fd0cd11aabcd1 two days later... * gnu/packages/machine-learning.scm (python-scikit-learn)[source](sha256): Update for upstream tag change. Marius Bakke
2018-12-03gnu: python-scikit-image: Propagate six and numpy....* gnu/packages/python.scm (python-scikit-image)[native-inputs]: Move PYTHON-NUMPY and PYTHON-SIX ... [propagated-inputs]: ... here. Marius Bakke
2018-12-03gnu: python-scikit-image: Update to 0.14.1....Also add explicit Python2 variants for its dependency closure. * gnu/packages/python.scm (python-scikit-image): Update to 0.14.1. [source](uri): Use PYPI-URI. [propagated-inputs]: Add PYTHON-CLOUDPICKLE, PYTHON-DASK, PYTHON-MATPLOTLIB and PYTHON-PYWAVELETS. (python2-toolz, python2-cloudpickle, python2-locket, python2-blosc, python2-partd, python2-dask): New public variables. Marius Bakke
2018-12-03gnu: python-dask: Update to 1.0.0....* gnu/packages/python.scm (python-dask): Update to 1.0.0. [arguments]: Disable one test for Python2, and override 'check' phase. Marius Bakke
2018-12-03gnu: python-cloudpickle: Update to 0.6.1....* gnu/packages/python.scm (python-cloudpickle): Update to 0.6.1. Marius Bakke
2018-12-03gnu: Add python-pywavelets....* gnu/packages/python.scm (python-pywavelets, python2-pywavelets): New public variables. Marius Bakke
2018-12-03gnu: kicad: Fix build with Boost >= 1.68....* gnu/packages/engineering.scm (kicad)[arguments]: Add phase 'adjust-boost-include'. Marius Bakke
2018-12-03gnu: python-greenlet: Update to 0.4.15....* gnu/packages/python.scm (python-greenlet): Update to 0.4.15. Marius Bakke
2018-12-03gnu: python-geventhttpclient: Fix test failure....* gnu/packages/python-web.scm (python-geventhttpclient)[arguments]: Add "--import-mode=append" to pytest invokation. Marius Bakke
2018-12-03doc: Fix "desktop" OS config example....* gnu/system/examples/desktop.tmpl (file-systems): Add 'file-system-label' call in 'device' field. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Laura Lazzati
2018-12-03gnu: emacs-helm-company: Update to 0.2.3....* gnu/packages/emacs.scm (emacs-helm-company): Update to 0.2.3. Pierre Neidhardt
2018-12-03Merge branch 'core-updates'Ludovic Courtès
2018-12-02guile-json: Download source from savannah....* gnu/packages/guile.scm (guile-json)[source]: Download tarball from savannah. Remove 'file-name' field. [native-inputs]: Remove autoconf and automake; tarball is bootstrapped. Eric Bavier
2018-12-02Make Guile-JSON a required dependency....* README (Requirements): Remove "optional" verbiage. * doc/guix.texi (Requirements): Move Guile-JSON from optional to required. * configure.ac (HAVE_GUILE_JSON): Remove Automake conditional. (have_guile_json): Error if not "yes". * Makefile.am (MODULE, SCM_TESTS)[HAVE_GUILE_JSON]: Add modules and tests unconditionally. * gnu/packages/package-mangement.scm (guix-minimal)[propagated-inputs]: Leave guile-json input. Eric Bavier
2018-12-02gnu: emacs-js2-mode: Update to 20180301....* gnu/packages/emacs.scm (emacs-js2-mode): Update to 20180301. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Mathieu Lirzin
2018-12-02gnu: emacs-google-translate: Update to 0.11.16....* gnu/packages/emacs.scm (emacs-google-translate): Update to 0.11.16. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Mathieu Lirzin
2018-12-02gnu: Add git-imerge....* gnu/packages/version-control.scm (git-imerge): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer
2018-12-02gnu: emacs-mu4e-conversation: Update to 20181126....* gnu/packages/emacs.scm (emacs-mu4e-conversation): Update to 20181126. Pierre Neidhardt
2018-12-02gnu: rust: Remove flaky test....* gnu/packages/rust.scm (rust-1.22)[arguments]<#:phases>[remove-flaky-test]: New phase. Danny Milosavljevic
2018-12-02gnu: Add sbcl-next....* gnu/packages/web-browsers.scm (sbcl-next): New variable. Pierre Neidhardt
2018-12-02gnu: Add next-gtk-webkit....* gnu/packages/web-browsers.scm (next-gtk-webkit): New variable. Pierre Neidhardt
2018-12-02gnu: ocaml@4.01: Enable building on aarch64-linux....This reverts 454e7132d6fffb5c9a5ce086ffd1b687416feb83. * gnu/packages/ocaml.scm (ocaml@4.01)[supported-systems]: Remove field. [arguments]: When building on aarch64-linux, replace the custom 'configure script. Efraim Flashner
2018-12-02gnu: ansible: Update to 2.7.4....* gnu/packages/admin.scm (ansible): Update to 2.7.4. Arun Isaac
2018-12-02gnu: python-pip: Update to 18.1....* gnu/packages/python.scm (python-pip): Update to 18.1. Nicolas Goaziou
2018-12-02gnu: linux-libre: Update to 4.19.6....* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.6. (%linux-libre-hash): Update hash. Mark H Weaver
2018-12-02gnu: linux-libre@4.14: Update to 4.14.85....* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.85. (%linux-libre-4.14-hash): Update hash. Mark H Weaver
2018-12-02gnu: linux-libre@4.9: Update to 4.9.142....* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.142. Mark H Weaver
2018-12-02gnu: linux-libre@4.4: Update to 4.4.166....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.166. Mark H Weaver
2018-12-02gnu: emacs-calfw: Update to 1.6....* gnu/packages/emacs.scm (emacs-calfw): Update to 1.6. Arun Isaac
2018-12-02gnu: emacs-howm: Add make-autoloads phase after install phase....* gnu/packages/emacs.scm (emacs-howm)[arguments]: Add make-autoloads phase after install phase, not after the non-existent rename-lispdir phase. Arun Isaac
2018-12-02gnu: python-duniterpy: Update to 0.50.0....* gnu/packages/finance.scm (python-duniterpy): Update to 0.50.0. [arguments]: Drop tests, which are failing. [propagated-inputs]: Add python-attr. Nicolas Goaziou
2018-12-02gnu: Add python-attr....* gnu/packages/python.scm (python-attr): New variable. Nicolas Goaziou
2018-12-02gnu: python-aiohttp: Update to 3.4.4....* gnu/packages/python-web.scm (python-aiohttp): Update to 3.4.4. [native-inputs] Remove test-related inputs since tests are not run. Nicolas Goaziou
2018-12-02gnu: python-async-timeout: Update to 3.0.1....* gnu/packages/python.scm (python-async-timeout): Update to 3.0.1. Nicolas Goaziou
2018-12-02gnu: silkaj: Update to 0.6.0....* gnu/packages/finance.scm (silkaj): Update to 0.6.0. [arguments]: Remove #:phases since upstream improved install process. Nicolas Goaziou