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2022-04-07gnu: LLVM, Clang: Add 14.0.0....* gnu/packages/llvm.scm (%llvm-monorepo-hashes, %llvm-patches, llvm-monorepo): New variables. (clang-runtime-from-llvm): Make HASH optional; use monorepo when not present. (clang-from-llvm): Likewise. (llvm-14, clang-runtime-14, clang-14, clang-toolchain-14, lld-14): New variables. (llvm-13): Inherit from LLVM-14. (lld-13): Inherit from LLD-14. (lld): Turn into alias for LLD-14. * gnu/packages/patches/clang-14.0-libc-search-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/zig.scm (zig): Change from LLD to LLD-13. Marius Bakke
2022-04-07gnu: radeontop: Simplify inputs....* gnu/packages/linux.scm (radeontop)[native-inputs]: Simplify. Marius Bakke
2022-04-07gnu: Add cura....* gnu/packages/engineering.scm (cura): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Malte Frank Gerdes
2022-04-07gnu: Add python-pynest2d....* gnu/packages/engineering.scm (python-pynest2d): New variable. Guillaume Le Vaillant
2022-04-07gnu: Add libnest2d-for-cura....* gnu/packages/engineering.scm (libnest2d-for-cura): New variable. Guillaume Le Vaillant
2022-04-07gnu: Add libsavitar....* gnu/packages/engineering.scm (libsavitar): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Malte Frank Gerdes
2022-04-07gnu: Add libcharon....* gnu/packages/engineering.scm (libcharon): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Malte Frank Gerdes
2022-04-07gnu: Add uranium....* gnu/packages/engineering.scm (uranium): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Malte Frank Gerdes
2022-04-07gnu: Add python-trimesh....* gnu/packages/python-science.scm (python-trimesh): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Malte Frank Gerdes
2022-04-07gnu: Add python-pyinstrument....* gnu/packages/python-check.scm (python-pyinstrument): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Malte Frank Gerdes
2022-04-07gnu: Add cura-binary-data....* gnu/packages/engineering.scm (cura-binary-data): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Malte Frank Gerdes
2022-04-07gnu: Add cura-engine....* gnu/packages/engineering.scm (cura-engine): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Malte Frank Gerdes
2022-04-07gnu: Add libarcus....* gnu/packages/engineering.scm (libarcus): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Malte Frank Gerdes
2022-04-07gnu: cl-slynk: Update to 1.0.43-6.4513c38....* gnu/packages/lisp-xyz.scm (sbcl-slynk): Update to 1.0.43-6.4513c38. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> André A. Gomes
2022-04-07gnu: emacs-sly: Update to 1.0.43-6.4513c38....* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 1.0.43-6.4513c38. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> André A. Gomes
2022-04-07gnu: kicad: Update to 6.0.4....* gnu/packages/engineering.scm (kicad, kicad-doc, kicad-symbols, kicad-footprints, kicad-packages3d, kicad-templates): Update to 6.0.4. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Peter Polidoro
2022-04-07gnu: cl-sxql: Update to 0.1.0-3.cc3478c....* gnu/packages/lisp-xyz.scm (sbcl-sxql): Update to 0.1.0-3.cc3478c and use revision variable in let block. [inputs]: Add missing sbcl-trivia input. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> jgart
2022-04-07gnu: shepherd: Add 0.9.0....* gnu/packages/admin.scm (shepherd): Rename to... (shepherd-0.8): ... this. New variable. (shepherd): Define as an alias for SHEPHERD-0.8. (shepherd-0.9): New variable. (guile2.2-shepherd): Inherit from SHEPHERD-0.9 and adjust inputs accordingly. Ludovic Courtès
2022-04-06gnu: lagrange: Update to 1.12.1....* gnu/packages/web-browsers.scm (lagrange): Update to 1.12.1. Efraim Flashner
2022-04-06gnu: keepassxc: Update to 2.7.1....* gnu/packages/password-utils.scm (keepassxc): Update to 2.7.1. Efraim Flashner
2022-04-06gnu: vim: Update to 8.2.4701....* gnu/packages/vim.scm (vim): Update to 8.2.4701. [arguments]: Adjust custom 'skip-or-fix-failing-tests phase to skip another test. Efraim Flashner
2022-04-06gnu: python-pybtex: Update to 0.24.0....* gnu/packages/python-xyz.scm (python-pybtex): Update to 0.24.0. [native-inputs]: Remove python-nose; add python-pytest. [inputs]: Move python-latexcodec, python-pyyaml, and python-six from here... [propagated-inputs]: ...to here. [arguments]: Use pytest. Ricardo Wurmus
2022-04-06gnu: python-latexcodec: Update to 2.0.1....* gnu/packages/python-xyz.scm (python-latexcodec): Update to 2.0.1. [inputs]: Move python-six from here... [propagated-inputs]: ...to here. Ricardo Wurmus
2022-04-06gnu: Add r-rnaseqdtu....* gnu/packages/bioinformatics.scm (r-rnaseqdtu): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Hong Li
2022-04-06gnu: Add r-stager....* gnu/packages/bioconductor.scm (r-stager): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Hong Li
2022-04-06gnu: Add r-rafalib....* gnu/packages/cran.scm (r-rafalib): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Hong Li
2022-04-05gnu: icecat: Update to 91.8.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2022-1097, CVE-2022-1196, CVE-2022-24713, CVE-2022-28281, CVE-2022-28282, CVE-2022-28285, CVE-2022-28286, and CVE-2022-28289. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. Mark H Weaver
2022-04-05gnu: poco: Make description a full sentence....* gnu/packages/cpp.scm (poco)[description]: Expand into a full sentence. Liliana Marie Prikler
2022-04-05gnu: u-boot-rockpro64-rk3399: Add support for booting from SCSI/SATA....* gnu/packages/bootloaders.scm (u-boot-rockpro64-rk3399)[arguments]: Add 'patch-config phase to support SCSI/SATA disks. Signed-off-by: Vagrant Cascadian <vagrant@debian.org> Ricardo Wurmus
2022-04-05gnu: u-boot: Update to 2022.04....* gnu/packages/bootloaders.scm (u-boot): Update to 2022.01. [native-inputs]: Add gnutls, tinfo, libuuid. (u-boot-qemu-riscv64-smode): Drop custom patches. * gnu/packages/patches/u-boot-allow-disabling-openssl.patch: Refresh patch. * gnu/packages/patches/u-boot-riscv64-fix-extlinux.patch: Remove patch, applied upstream. * gnu/local.mk (dist_patch_DATA): Update with removed patches. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Vagrant Cascadian
2022-04-05gnu: Add ncurses-with-tinfo....* gnu/packages/ncurses.scm (ncurses/tinfo): New variable. Vagrant Cascadian
2022-04-05gnu: l2md: Update to 9db252bc....[[PGP Signed Part:No public key for 2208D20958C1DEB0 created at 2022-03-28T11:03:48+0200 using RSA]] * gnu/packages/mail.scm (l2md): Update to 9db252bc. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Andrew Tropin
2022-04-05gnu: plocate: Build with "--sharedstatedir=/var"....Current plocate package sets the --sharedstatedir to a store directory, which causes updatedb and plocate to fail by default since the store is immutable. This will set the default database path to /var/cache/plocate.db instead. * gnu/packages/search.scm (plocate): Change build options. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ykonai
2022-04-05gnu: phodav: Use libsoup 2 instead of libsoup 3....Looks like phodav requires libsoup 2. Example of failing build logs, wanting libsoup 2.4: <https://ci.guix.gnu.org/build/584454/log/raw> After swapping the dependency, tests were failing due to HOME not being writable. I added a new build phase to account for this. I also removed the start-virtual-dir-server phase which no longer seems required, the tests pass without it. * gnu/packages/gnome.scm (phodav): Fix build, tests. [inputs]: Replace libsoup 3 with libsoup 2. [arguments]<#:phases>[set-temporary-home]: New phase. [arguments]<#:phases>[start-virtual-dir-server]: Remove phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Leo Nikkilä
2022-04-05gnu: pantheon-calculator: Update to 1.7.2....* gnu/packages/pantheon.scm (pantheon-calculator): Update to 1.7.2. [arguments]: Remove trailing boolean. [inputs]: Use guix style and add libhandy input. Signed-off-by: Ludovic Courtès <ludo@gnu.org> jgart
2022-04-05gnu: python-w3lib: Fix build....* gnu/packages/python-web.scm (python-w3lib): Fix build. [source]: Add python-w3lib-fix-test-failure.patch. [arguments]: Use pytest in the 'check phase. [native-inputs]: Add python-pytest. * gnu/packages/patches/python-w3lib-fix-test-failure.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Felix Gruber
2022-04-05gnu: python-gst: Fix the concatenation of install path....Fixes a regression introduced in a5c2e7961c21ef8620ce4cfb3569109fbd694e1e. * gnu/packages/gstreamer.scm (python-gst): [arguments]: <configure-flags>: Add missing leading slash. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Zhu Zihao
2022-04-05gnu: python-dotenv: Update to 0.20.0....* gnu/packages/python-xyz.scm (python-dotenv): Update to 0.20.0. [home-page]: Update home page. Signed-off-by: Ludovic Courtès <ludo@gnu.org> jgart
2022-04-05gnu: linux: Allow kconfig options to be strings...* gnu/packages/linux.scm (config->string): add a clause handling strings Allows for the declarative configuration of kconfig options which accept strings, such as CONFIG_MODULE_SIG_KEY. I've enclosed the given string in quotes, but don't do any kind of escaping. See the kernel mailing list for the current state of escaped strings upstream: https://patchwork.kernel.org/project/linux-kbuild/patch/1431003982-992-1-git-send-email-sr@denx.de/ Apologies to those with double-quotes or backslashes in their CONFIG_SYSTEM_*_KEYS. Signed-off-by: antlers <autumnalantlers@gmail.com> Signed-off-by: Ludovic Courtès <ludo@gnu.org> antlers
2022-04-05gnu: celluloid: Update to 0.23....* gnu/packages/video.scm (celluloid): Update to 0.23. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Michael Rohleder
2022-04-05gnu: curlie: Update to 1.6.9...* gnu/packages/curl.scm (curlie): Update to 1.6.9 Signed-off-by: Ludovic Courtès <ludo@gnu.org> Imran Iqbal
2022-04-05gnu: xmonad-next: Change #:phases to gexp....* gnu/packages/wm.scm (xmonad-next)[arguments]: Use #$output, #$name and #$synopsis instead of %output, name and synopsis. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Daniel Meißner
2022-04-05Merge branch 'wip-pyyaml'Ricardo Wurmus
2022-04-05gnu: pigx-scrnaseq: Set NUMBA_CACHE_DIR....This is needed since the update of python-loompy. * gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Rename 'set-PYTHONPATH to 'set-additional-environment-variables and set NUMBA_CACHE_DIR. Ricardo Wurmus
2022-04-05gnu: pigx-scrnaseq: Use new inputs style....* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Use plain list. Ricardo Wurmus
2022-04-05gnu: pigx-scrnaseq: Update to 1.1.8....* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.8. [patches]: Remove. [native-inputs]: Remove. * gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Ricardo Wurmus
2022-04-05gnu: r-with-tests: Update to 4.1.3....* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.3. Ricardo Wurmus
2022-04-05gnu: git: Update to 2.35.1....* gnu/packages/version-control.scm (git): Update to 2.35.1. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Greg Hogan
2022-04-05Revert "gnu: git: Update to 2.35.1."...This reverts commit 223a3d7f7fdb6af9c4c090785cab15d38680e887, as it triggered thousands of rebuilds due to inadvertently touching git-minimal/fixed. Reported-by: Christopher Baines <mail@cbaines.net> Maxim Cournoyer
2022-04-05gnu: python-pyyaml: Update to 6.0....* gnu/packages/python-xyz.scm (python-pyyaml): Update to 6.0. Ricardo Wurmus