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2024-12-03gnu: gnumach: Update to v1.8+git20240714.Janneke Nieuwenhuizen
* gnu/packages/patches/gnumach-version.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/hurd.scm (gnumach-headers): Update to v1.8+git20240714 and use it. * gnu/packages/commencement.scm (gnumach-headers-boot0)[origin]: Reset patches. Change-Id: I147c64021c2ee79dfc4cd4fd9a29529eef8890c5
2024-12-03gnu: python-falcon: Fix tests.Ricardo Wurmus
* gnu/packages/python-web.scm (python-falcon)[native-inputs]: Add python-orjson. [arguments]: Do not patch test file; respect test-flags in custom 'check phase; provide test-flags to ignore examples and benchmarks. [build-system]: Use pyproject-build-system. Change-Id: Ic173e2d940a2bb9c7f81ea3e70475f8bfff36dfb Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-12-03gnu: python-fakeredis: Update to 2.26.1.Ricardo Wurmus
* gnu/packages/databases.scm (python-fakeredis): Update to 2.26.1. [arguments]: Do not run slow tests; add phases 'poetry-compatibility and 'start-redis. [propagated-inputs]: Add python-typing-extensions. [native-inputs]: Add redis. Change-Id: I18ed122d9e5307d3d723cfc9ef0d51f120b4ccb5 Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-12-03gnu: python-redis: Update to 5.2.0.Ricardo Wurmus
* gnu/packages/databases.scm (python-redis): Update to 5.2.0. [arguments]: Update list of tests to skip; add phase 'relax-requirements. [native-inputs]: Add python-numpy. Change-Id: I789c511fb4a516e6cdad06dba695af9bb89f562d Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-12-02gnu: libgit2: Update to 1.8.3.Ashish SHUKLA
* gnu/packages/version-control.scm (libgit2-1.8): Update to 1.8.3. Change-Id: Iff5b1f341a480d06e1f618bc306f0ff0c3a62713 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-12-02gnu: libreoffice: Update to 24.8.3.2.Nicolas Graves
* gnu/packages/libreoffice.scm (libreoffice): Update to 24.8.3.2. [source]<uri>: Add secondary uri. [arguments]<#:phases>: Fix build issue related to issue 43579 in phase 'prepare-src. [configure-flags]: Add optimising flags --disable-cve-tests, --enable-readonly-installset, --disable-dependency-tracking. [native-inputs]: Add gcc-toolchain-12. [inputs]: Add argon2, zxcvbn-c. Change-Id: I72e0ebb4d075c47ea168b181f969a97f9249150a Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-12-02gnu: povray: Fix test run requiring interaction.Ivan Vilata i Balaguer
[[PGP Signed Part:No public key for 3DECC105F5DD2382 created at 2024-10-23T14:00:24+0200 using RSA]] The test render required pressing a key after it was done, which caused the package build to get stuck. Also disable the render display window, which did not cause issues but was pointless. * gnu/packages/graphics.scm (povray)[args]: Patch test render not to pause nor display a window. Change-Id: Ia9527b3a67896972b399464b97dda464365d41ea Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-12-02gnu: freedict-tools: Fix non-determinism of dictzip compressed file headers.Runciter
Reset .dict file mtime to start of the epoch before compressing with dictzip. * gnu/packages/patches/freedict-tools-fix-determinism.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/dictionaries.scm (freedict-tools): Use it. Signed-off-by: Runciter <runciter@whispers-vpn.org> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-12-02gnu: Add freedict-dictionaries.Runciter
* gnu/packages/dictionaries (freedict-dictionaries): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2024-12-02gnu: Add freedict-tools.Runciter
* gnu/packages/dictionaries.scm (freedict-tools): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: I141d30aea0e2c492b272be2ab9359e6b7569f932
2024-12-02gnu: Add dictd.Runciter
* gnu/packages/dictd.scm (dictd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: Id1dbe8c77186574e7ad98ce3f7c8fa14b99b4db4
2024-12-02gnu: Add (gnu packages dictd).Runciter
* gnu/packages/dictd.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: I3b68fbbed0a7a44287a6eda6c1e66e068fa17b8f
2024-12-02gnu: homer: Install config.txt.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (homer)[native-inputs]: Add config.txt. [arguments]: Update 'configure phase to place config.txt in expected location; patch configuration code to optionally load a user's configuration file. Change-Id: Ib05c828e751c6568524bbef45997a42fade4545a
2024-12-02gnu: homer: Install homer executable.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (homer)[arguments]: Update 'install phase to also install "homer" to the bin directory. Change-Id: Ia2d23fce493f9c10cc43ac126cd83956b4b9bb05
2024-12-02Merge remote-tracking branch 'origin/rust-team'Efraim Flashner
Change-Id: I6d5c28252f060eeb69eb02fd281e7268bb885b29
2024-12-02gnu: zstd: Fix cross-building to mingw32.Efraim Flashner
* gnu/packages/compression.scm (zstd)[arguments]: Adjust the custom 'adjust-library-locations phase to have separate logic for targeting mingw32. Adjust the make-flags to add some extra flags when targeting mingw32. Change-Id: Ifd32a6bd9157af93c7338dacc96467e2756b9314
2024-12-02gnu: redis: Add comment about upcoming license change.Efraim Flashner
* gnu/packages/databases.scm (redis): Add a note with the package to be aware of the upcoming non-free license change. Change-Id: I60ef9bce81b6650d88f567e98c5bcf543a13082e
2024-12-02gnu: python-pairtools: Update to 1.1.0-fix.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pairtools): Update to 1.1.0-fix. [build-system]: Use pyproject-build-system. [arguments]: Add phase 'patch-setup.py. [native-inputs]: Add python-pytest-cov, python-setuptools, and python-wheel. Change-Id: Ifa3c12de228420d8fdd7b0053bb9da80b9b3efe4
2024-12-02gnu: Add macs-3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (macs-3): New variable. Change-Id: I4bc417e90a1e9d6d28226ea4f66ddc035826c2c4
2024-12-02gnu: python-hmmlearn: Update to 0.3.3.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-hmmlearn): Update to 0.3.3. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase; add phases 'set-core-count and 'build-extensions. [propagated-inputs]: Remove pybind11 and python-setuptools-scm. [native-inputs]: Add pybind11, python-setuptools-scm, and util-linux. [properties]: Add hints for the updater. Change-Id: I1acb69c74ae9c4a508fe28cdaf834d258e7778ff
2024-12-02gnu: Add python-cykhash.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-cykhash): New variable. Change-Id: I7f46da1f53b10957c102ca21e74f144955676730
2024-12-02gnu: emacs-gnosis: Update to 0.4.8.Thanos Apollo
* gnu/packages/emacs-xyz.scm (emacs-gnosis): Update to 0.4.8. [home-page]: Add ending slash. [synopsis]: Remove ending period. [description]: Use two spaces after sentence. Change-Id: Ie80016fc190e66695b7a8ea8e3fded7854ebc872 Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-12-02gnu: librewolf: Update to 133.0-1 [security fixes].Ian Eure
New upstream version. Fixes CVEs: CVE-2024-11691: Out-of-bounds write in Apple GPU drivers via WebGL CVE-2024-11700: Potential Tapjacking Exploit for Intent Confirmation on Android CVE-2024-11692: Select list elements could be shown over another site CVE-2024-11701: Misleading Address Bar State During Navigation Interruption CVE-2024-11702: Inadequate Clipboard Protection in Private Browsing Mode on Android CVE-2024-11693: Download Protections were bypassed by .library-ms files on Windows CVE-2024-11694: CSP Bypass and XSS Exposure via Web Compatibility Shims CVE-2024-11695: URL Bar Spoofing via Manipulated Punycode and Whitespace Characters CVE-2024-11703: Password access without authentication via PIN bypass on Android CVE-2024-11696: Unhandled Exception in Add-on Signature Verification CVE-2024-11697: Improper Keypress Handling in Executable File Confirmation Dialog CVE-2024-11704: Potential Double-Free Vulnerability in PKCS#7 Decryption Handling CVE-2024-11698: Fullscreen Lock-Up When Modal Dialog Interrupts Transition on macOS CVE-2024-11705: Null Pointer Dereference in NSC_DeriveKey CVE-2024-11706: Null Pointer Dereference in PKCS#12 Utility CVE-2024-11708: Data race with PlaybackParams CVE-2024-11699: Memory safety bugs fixed in Firefox 133, Firefox ESR 128.5, and Thunderbird 128.5 * gnu/packages/librewolf.scm (librewolf): Update to 133.0-1. Change-Id: I611505daf4d4f0940405190471f443d99102c2b9 Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-12-02gnu: nss-rapid: Update to 3.107.Ian Eure
* gnu/packages/nss.scm (nss-rapid): Update to 3.107. Change-Id: I05c6e9c6633ed222d26b76ae5def35179f31f317 Signed-off-by: Hilton Chain <hako@ultrarare.space>
2024-12-02gnu: redis: Update to 7.2.6.Hilton Chain
* gnu/packages/databases.scm (redis): Update to 7.2.6. [arguments]<#:phases>: Update failing tests. Change-Id: Ife107541697fda4f0928497560871f8ffb07d445
2024-12-01gnu: git-minimal: Add ‘upstream-name’ property.Ludovic Courtès
* gnu/packages/version-control.scm (git-minimal)[properties]: Add ‘upstream-name’. Change-Id: I2d2516003b7f686852a3531859d06ca7f4e4820d
2024-12-01gnu: gnutls: Change release monitoring URL.Ludovic Courtès
* gnu/packages/tls.scm (gnutls)[properties]: Change release monitoring URL. Add ‘upstream-name’. Change-Id: If6ee941246b130914ddf7ca11c074a9547b9d739
2024-12-01gnu: Update updater properties for GnuPG-related packages.Ludovic Courtès
* gnu/packages/gnupg.scm (libgpg-error)[properties]: Remove. (libgcrypt)[properties]: Remove. (libassuan)[properties]: Remove. (libksba)[properties]: Remove. (npth)[properties]: Remove. (gnupg)[properties]: Remove. (gpgme)[properties]: Remove. (pinentry-tty)[properties]: Change for ‘generic-html’. (gpa)[properties]: Remove. Change-Id: I1eb9d6ad5bb3ecbfbef3d44dbae281a3de7ebac7
2024-12-01gnu: ucx: Enable building on riscv64-linux.Efraim Flashner
* gnu/packages/fabric-management.scm (ucx)[supported-systems]: Add riscv64-linux. Change-Id: I84d506c3ebfd8d4d237a6545ba125f4a037fa821
2024-12-01gnu: ucx: Fix building on powerpc64le-linux.Efraim Flashner
* gnu/packages/fabric-management.scm (ucx)[source]: Add snippet to add missing include file. Change-Id: I65a0d6e57a2728013030f3f344305744fa913390
2024-12-01gnu: openmpi@5: Update to 5.0.6.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi-5): Update to 5.0.6. Change-Id: I1aed5f0e76d64a215c4a13f445628ec206e31acf
2024-12-01gnu: rdma-core: Update to 54.0.Ludovic Courtès
* gnu/packages/linux.scm (rdma-core): Update to 54.0. Change-Id: I7f10ec57a1cad585abb08bdc30bd9e2aaafe7624
2024-12-01gnu: ucx: Update to 1.17.0.Ludovic Courtès
* gnu/packages/fabric-management.scm (ucx): Update to 1.17.0. * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Rebase. Change-Id: I2089de93da88f4f81c4b233eb03abae1f41dfe7f
2024-12-01Revert "gnu: ucx: Update to 1.17.0."Ludovic Courtès
This reverts commit 7c36577cdec8185ea7df608eb9a68424e19ee9cb, which broke unit tests running in the chroot build environment. For instance, tests of ‘hdf5-parallel-openmpi’ would fail with: Testing ../../src/h5diff/ph5diff -c 1_vds.h5 2_vds.h5 *FAILED* ====Expected result (expect_sorted) differs from actual result (actual_sorted) *** expect_sorted 2024-12-01 16:41:03.795879595 +0000 --- actual_sorted 2024-12-01 16:41:03.791879542 +0000 *************** *** 1,3 **** --- 1,15 ---- Not comparable: </vds_dset> has rank 3, dimensions [5x18x8], max dimensions [18446744073709551615x18x8] Warning: </vds_dset> or </vds_dset> is a virtual dataset + [1733071262.437780] [localhost:33263:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory + [1733071262.468994] [localhost:33247:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory + [1733071262.479911] [localhost:33242:0] tcp_iface.c:893 UCX ERROR scandir(/sys/class/net) failed: No such file or directory Change-Id: I9c08d3c5375a2abd7d78344dfbef9b407828d1e0
2024-12-01gnu: icedove: Update to 115.16.3.Jonathan Brielmaier
* gnu/packages/gnuzilla.scm (icedove): Update to 115.16.3. Change-Id: I076e670a5442a910ac6d5aeb7ed8f64236442062
2024-12-01gnu: openmpi-5: Don't force building with ucx.Efraim Flashner
* gnu/packages/mpi.scm (openmpi-5)[inputs]: Use inherited inputs to only add ucx when it is supported. [arguments]: Only add configure-flag for ucx when it is included as an input. Change-Id: I4a5fc86999ffbafdb99bd68c170fc7a1fa6a33a5
2024-12-01gnu: ucx: Update to 1.17.0.Efraim Flashner
* gnu/packages/mpi.scm (ucx): Update to 1.17.0. [source]: Remove patch. Add snippet to add missing header. [supported-systems]: Add riscv64-linux. * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Change-Id: I56db18f32ec0baa8439a31a1781763f318e8726e
2024-12-01gnu: libfabric: Check for transitive supported packages.Efraim Flashner
* gnu/packages/linux.scm (libfabric)[inputs]: Adjust if-supported function to check the package-transitive-supported-systems. Change-Id: I47d14b08906753d20f6f2a7ab4068a9e84319350
2024-12-01gnu: cassini-headers: Limit supported systems.Efraim Flashner
* gnu/packages/linux.scm (cassini-headers)[supported-systems]: New field. Change-Id: I44efa95de527099774abb57da78410c627fdc968
2024-12-01gnu: Add scenefx.Josep Bigorra
* gnu/packages/wm.scm (scenefx): New variable. Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Change-Id: Ia91747cbec59226a83a020b5fedbfd99886c35df
2024-12-01gnu: cataclysm-dda: Update to 0-H.Lynn Leichtle
* gnu/packages/games.scm (cataclysm-dda): Update to 0.H. Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn> Change-Id: I8f3776b1bbb4ead2d409b2e1a3c4c98537126f12
2024-12-01gnu: plasma-nm: Add missing inputs.Zheng Junjie
* gnu/packages/kde-plasma.scm (plasma-nm)[inputs]: Add mobile-broadband-provider-info. [arguments]: Stop replace 'check phase. Change-Id: I82b220694e26b48f190c1c5d6609da39e955cc30
2024-12-01gnu: geoclue: Update to 2.7.2.Sergey Trofimov
* gnu/packages/gnome.scm (geoclue): Update to 2.7.2. * gnu/packages/patches/geoclue-config.patch: Adjust. Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2024-12-01gnu: gimp-next: Update to 3.0.0-RC1.Liliana Marie Prikler
* gnu/packages/gimp.scm (gimp-next): Update to 3.0.0-RC1. [inputs]: Add python-pygobject. Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-12-01gnu: gegl: Update to 0.4.50.Liliana Marie Prikler
* gnu/packages/gimp.scm (gegl): Update to 0.4.50. Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-12-01gnu: babl: Update to 0.1.110.Liliana Marie Prikler
* gnu/packages/gimp.scm (babl): Update to 0.1.110. Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-12-01gnu: r-voltron: Add Python inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-voltron)[inputs]: Add python, python-numpy, python-pandas, python-anndata, python-h5py, python-natsort, python-numcodecs, python-packaging, python-scipy, python-tifffile, and python-zarr. Change-Id: Iab137936550b51d6839d9beaa47f6102a8f3c355
2024-12-01gnu: r-voltron: Update to 0.2.0-1.9f9415c.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-voltron): Update to 0.2.0-1.9f9415c. [inputs]: Remove tbb. [propagated-inputs]: Remove r-anndata, r-fastdummies, r-fnn, r-ggforce, r-hdf5r, r-htmltools, r-interp, r-morpho, r-raster, r-s4vectors, r-scales, r-terra, r-umap, and r-xml; add r-basilisk, r-ids, r-rann, r-rcdt, r-rcppannoy, r-rcpparmadillo, r-reticulate, r-s4arrays, and r-sp. [native-inputs]: Add r-testthat. [description]: Update. Change-Id: I8051ade560e03f8e3760560ec7b78d9941c00e08
2024-12-01gnu: Add r-rcdt.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcdt): New variable. Change-Id: I83b00c95f2c3c6f82e9e9cf8f173ba087e1c29e0
2024-12-01gnu: Add r-colorsgen.Ricardo Wurmus
* gnu/packages/cran.scm (r-colorsgen): New variable. Change-Id: I1acb2b0dd2661a5abdb59451522da6dffa85f470
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