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2020-09-14gnu: sbcl-cxml: Remove unnecessary phase....* gnu/packages/lisp-xyz.scm (sbcl-cxml)[arguments]: Remove 'install-dtd' phase. Guillaume Le Vaillant
2020-09-14gnu: sbcl-trivial-mimes: Remove unnecessary phase....* gnu/packages/lisp-xyz.scm (sbcl-trivial-mimes)[arguments]: Remove 'fix-paths' phase. Guillaume Le Vaillant
2020-09-14gnu: sbcl-trivial-backtrace: Fix deletion of test results....* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace)[arguments]: Fix 'delete-test-results' phase. Guillaume Le Vaillant
2020-09-13gnu: Add cl-ppcre-unicode....* gnu/packages/lisp-xyz.scm (cl-ppcre-unicode): New variable. Guillaume Le Vaillant
2020-09-13gnu: sbcl-clsql: Activate postgresql support....* gnu/packages/lisp-xyz.scm (sbcl-clsql)[arguments]: Remove 'clsql-cffi.asd' from 'asd-files'. Add 'clsql-postgresql' to 'asd-systems'. Add 'fix-build' phase. Guillaume Le Vaillant
2020-09-12gnu: cl-uffi: Fix build....* gnu/packages/lisp-xyz.scm (cl-uffi)[arguments]: Remove 'fix-permissions' and 'reset-gzip-timestamp' phases. Guillaume Le Vaillant
2020-09-12gnu: sbcl-portable-threads: Update to 2.3-2.aa26bf3....* gnu/packages/lisp-xyz.scm (sbcl-portable-threads): Update to 2.3-2.aa26bf3. [synopsis]: Shorten the synopsis. Guillaume Le Vaillant
2020-09-12gnu: sbcl-cl-rdkafka: Fix build....* gnu/packages/lisp-xyz.scm (sbcl-cl-rdkafka)[arguments]: Remove 'move-bundle' phase. Guillaume Le Vaillant
2020-09-12gnu: sbcl-osicat: Fix build....* gnu/packages/lisp-xyz.scm (sbcl-osicat)[arguments]: Remove custom 'cleanup' phase. Guillaume Le Vaillant
2020-09-12gnu: sbcl-moptilities: Fix tests....* gnu/packages/lisp-xyz.scm (sbcl-moptilities)[arguments]: Add 'fix-tests' phase. Guillaume Le Vaillant
2020-09-12gnu: cl-asdf: Update to 3.3.4....* gnu/packages/lisp.scm (cl-asdf): Update to 3.3.4. [arguments]: Add small patch for default ASDF configuration. (asdf-substitutions): Remove variable. (sbcl, ecl)[arguments]: Remove call to 'asdf-substitutions'. Guillaume Le Vaillant
2020-09-12gnu: Adapt Lisp packages to changes in asdf-build-system....* gnu/packages/patches/sbcl-graph-asdf-definitions.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/lisp-xyz.scm (sbcl-cl-ppcre)[arguments]: Add 'disable-ppcre-unicode' phase. (sbcl-cl-unicode-base): Remove variable and merge its content in ... (sbcl-cl-unicode): ... here. (sbcl-cl-ppcre-unicode)[arguments]: Add 'disable-ppcre' phase. (sbcl-cl-aa, sbcl-cl-paths, sbcl-cl-paths-ttf): Remove variables and merge their contents in ... (sbcl-cl-vectors): ... here. (sbcl-spatial-trees)[arguments]: Remove 'asd-file' keyword. (sbcl-clx-truetype)[inputs]: Remove 'cl-paths-ttf'. (sbcl-slynk-boot0, sbcl-slynk-arglists, sbcl-slynk-util, sbcl-slynk-fancy-inspector, sbcl-slynk-package-fu, sbcl-slynk-mrepl, sbcl-slynk-trace-dialog, sbcl-slynk-profiler, sbcl-slynk-stickers, sbcl-slynk-indentation, sbcl-slynk-retro, slynk-systems): Remove variables and merge their contents in ... (sbcl-slynk): ... here. (uglify-js)[arguments]: Fix ASDF initialization in Lisp script. (sbcl-cl-yacc)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-3bmd-ext-code-blocks): Remove variable and merge its content in ... (sbcl-3bmd): ... here. (sbcl-slime-swank, ecl-slime-swank): New variables. (sbcl-mgl-pax)[propagated-inputs]: Remove and move the content in ... [inputs]: ... here. Remove '3bmd-ext-code-blocks'. (sbcl-prove-asdf): Remove variable and merge its content in ... (sbcl-prove): ... here. (sbcl-proc-parse)[native-inputs]: Remove 'prove-asdf'. (sbcl-ascii-strings, sbcl-simple-scanf): Remove variables and merge their contents in ... (sbcl-cl-string-match): ... here. (sbcl-queues.simple-queue, sbcl-queues.simple-cqueue, sbcl-queues.priority-queue, sbcl-queues.priority-cqueue): Remove variables and merge their contents in ... (sbcl-queues): ... here. (sbcl-cffi-bootstrap, sbcl-cffi-toolchain, sbcl-cffi-libffi, sbcl-cffi-grovel, sbcl-cffi-uffi-compat): Remove variables and merge their contents in ... (sbcl-cffi): ... here. (ecl-cffi): New variable. (sbcl-cl-sqlite)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-cl-cffi-gtk-boot0, sbcl-cl-cffi-gtk-glib, sbcl-cl-cffi-gtk-gobject, sbcl-cl-cffi-gtk-gio, sbcl-cl-cffi-gtk-cairo, sbcl-cl-cffi-gtk-pango, sbcl-cl-cffi-gtk-gdk-pixbuf, sbcl-cl-cffi-gtk-gdk): Remove variables and merge their contents in ... (sbcl-cl-cffi-gtk): ... here. (sbcl-cl-webkit)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-usocket-boot0, sbcl-usocket-server): Remove variables and merge their contents in ... (sbcl-usocket): ... here. (sbcl-cl-annot)[arguments]: Remove. (sbcl-cl-syntax-annot, sbcl-cl-syntax-interpol): Remove variables and merge their contents in ... (sbcl-cl-syntax): ... here. (sbcl-cl-utilities)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-quri, sbcl-myway, sbcl-subseq, sbcl-smart-buffer)[native-inputs]: Remove 'prove-asdf'. (sbcl-fast-http)[native-inputs]: Remove 'prove-asdf' and 'cl-syntax-interpol'. Add 'cl-syntax'. (sbcl-static-vectors)[native-inputs]: Remove 'cffi-grovel'. Add 'cffi'. (sbcl-jonathan)[native-inputs]: Remove 'prove-asdf'. [inputs]: Remove 'cl-syntax-annot'. (sbcl-http-body)[native-inputs]: Remove 'prove-asdf'. (sbcl-lack-request, sbcl-lack-response, sbcl-lack-component, sbcl-lack-util, sbcl-lack-middleware-backtrace, sbcl-lack-middleware-static): Remove variables and merge their contents in ... (sbcl-lack): ... here. (sbcl-ningle)[native-inputs]: Remove 'prove-asdf'. [inputs]: Remove 'cl-syntax-annot', 'lack-request', 'lack-response' and 'lack-component'. Add 'lack'. (clack-commit, clack-revision, sbcl-clack-handler-fcgi, sbcl-clack-socket, sbcl-clack-handler-hunchentoot): Remove variables and merge their contents in ... (sbcl-clack): ... here. (sbcl-parse-declarations)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-burgled-batteries3)[inputs]: Remove 'cffi-grovel'. (sbcl-trivial-utf-8)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-iolib.asdf, sbcl-iolib.conf, sbcl-iolib.common-lisp, sbcl-iolib.base, sbcl-iolib.grovel, sbcl-iolib+syscalls, sbcl-iolib+multiplex, sbcl-iolib+streams, sbcl-iolib+sockets): Remove variables and merge their contents in ... (sbcl-iolib): ... here. (sbcl-cxml+xml, sbcl-cxml+dom, sbcl-cxml+klacks, sbcl-cxml+test): Remove variables and merge their contents in ... (sbcl-cxml): ... here. (sbcl-cl-cookie)[native-inputs]: Remove 'prove-asdf'. (sbcl-dexador)[native-inputs]: Remove 'prove-asdf' and 'lack-request'. Add 'lack". (sbcl-fare-quasiquote-optima, sbcl-fare-quasiquote-readtable, sbcl-fare-quasiquote-extras): Remove variables and merge their contents in ... (sbcl-fare-quasiquote): ... here. (sbcl-trivia.level0, sbcl-trivia.level1, sbcl-trivia.level2): Remove variables and merge their contents in ... (sbcl-trivia.trivial): ... here. (sbcl-trivia.balland2006, sbcl-trivia.ppcre, sbcl-trivia.quasiquote, sbcl-trivia.cffi): Remove variables and merge their contents in ... (sbcl-trivia): ... here. (sbcl-cl-str)[native-inputs]: Remove 'prove-asdf'. [arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-dbus): New variable. (sbcl-s-sysdeps)[inputs]: Remove 'usocket-server'. (sbcl-periods-series): Remove variable and merge its content in ... (sbcl-periods): ... here. (sbcl-fprog): Remove variable and merge its content in ... (sbcl-cambl): ... here. (sbcl-cl-ledger)[inputs]: Remove 'periods-series'. Add 'periods'. (sbcl-serapeum)[inputs]: Remove 'trivia.quasiquote' and 'fare-quasiquote-extras'. Add 'fare-quasiquote'. (sbcl-stefil)[native-inputs]: Remove. [inputs]: Add swank. (sbcl-graph-dot, sbcl-graph-json): Remove variables and merge their contents in ... (sbcl-graph): ... here. (sbcl-foreign-array, sbcl-physical-dimension, sbcl-science-data): Remove variables and merge their contents in ... (sbcl-antik-base): ... here. (sbcl-gsll)[inputs]: Remove 'cffi-grovel', 'cffi-libffi' and 'foreign-array'. Add 'antik-base' and 'cffi'. (sbcl-antik)[inputs]: Remove 'physical-dimension". Add 'antik-base'. [arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. Add 'fix-build' phase. (sbcl-symbol-munger-boot0): Remove variable and merge its content in ... (sbcl-symbol-munger): ... here. (sbcl-lisp-unit2-boot0): Remove variable and merge its content in ... (sbcl-lisp-unit2): ... here. (sbcl-cl-ana-boot0, sbcl-cl-ana.pathname-utils, sbcl-cl-ana.package-utils, sbcl-cl-ana.string-utils, sbcl-cl-ana.functional-utils, sbcl-cl-ana.list-utils, sbcl-cl-ana.generic-math, sbcl-cl-ana.math-functions, sbcl-cl-ana.calculus, sbcl-cl-ana.symbol-utils, sbcl-cl-ana.macro-utils, sbcl-cl-ana.binary-tree, sbcl-cl-ana.tensor, sbcl-cl-ana.error-propagation, sbcl-cl-ana.quantity, sbcl-cl-ana.table, sbcl-cl-ana.table-utils, sbcl-cl-ana.hdf-cffi, sbcl-cl-ana.int-char, sbcl-cl-ana.memoization, sbcl-cl-ana.typespec, sbcl-cl-ana.hdf-typespec, sbcl-cl-ana.hdf-utils, typed-table, sbcl-cl-ana.hdf-table, sbcl-cl-ana.gsl-cffi, sbcl-cl-ana.ntuple-table, sbcl-cl-ana.csv-table, sbcl-cl-ana.reusable-table, sbcl-cl-ana.linear-algebra, sbcl-cl-ana.lorentz, sbcl-cl-ana.clos-utils, sbcl-cl-ana.hash-table-utils, sbcl-cl-ana.map, sbcl-cl-ana.fitting, sbcl-cl-ana.histogram, sbcl-cl-ana.file-utils, sbcl-cl-ana.statistics, sbcl-cl-ana.gnuplot-interface, sbcl-cl-ana.plotting, sbcl-cl-ana.table-viewing, sbcl-cl-ana.serialization, sbcl-cl-ana.makeres, sbcl-cl-ana.makeres-macro, sbcl-cl-ana.makeres-block, sbcl-cl-ana.makeres-progress, sbcl-cl-ana.makeres-table, sbcl-cl-ana.makeres-graphviz, sbcl-cl-ana.makeres-branch, sbcl-cl-ana.utils, sbcl-cl-ana.statistical-learning): Remove variables and merge their contents in ... (sbcl-cl-ana): ... here. (sbcl-cl-libuv)[inputs]: Remove 'cffi-grovel'. (sbcl-cl-async-base, sbcl-cl-async-util, sbcl-cl-async-repl, sbcl-cl-async-ssl): Remove variables and merge their contents in ... (sbcl-cl-async): ... here. (sbcl-ltk-mw, sbcl-ltk-remote): Remove variables and merge their contents in ... (sbcl-ltk): ... here. [arguments]: Add 'fix-build' phase. (sbcl-hdf5-cffi)[inputs]: Remove 'cffi-grovel'. [arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-cl-randist, sbcl-float-features, sbcl-function-cache, sbcl-type-r, sbcl-trivialib-type-unify, sbcl-specialized-function, sbcl-constantfold, sbcl-gtype, sbcl-numcl)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-pzmq)[inputs]: Remove 'cffi-grovel'. (sbcl-simple-date, sbcl-cl-postgres, sbcl-simple-date-postgrs-glue, sbcl-s-sql): Remove variables and merge their contents in ... (sbcl-postmodern): ... here. (sbcl-dbd-mysql, sbcl-dbd-postgres, sbcl-dbd-sqlite3): Remove variables and merge their contents in ... (sbcl-dbi): ... here. (sbcl-clsql-uffi, sbcl-clsql-sqlite3, sbcl-clsql-postgresql, sbcl-clsql-postgresql-socket3, sbcl-clsql-mysql): Remove variables and merge their contents in ... (sbcl-clsql): ... here. (sbcl-sycamore)[arguments]: Remove 'asd-file' keyword and add 'asd-files' keyword. (sbcl-osicat)[native-inputs]: Remove 'cffi-grovel'. (sbcl-clx-xembed, sbcl-quantile-estimator): Remove 'asd-system-name' keyword and add 'asd-systems' keyword. (sbcl-prometheus.collectors.sbcl, sbcl-prometheus.collectors.process, sbcl-prometheus.formats.test, sbcl-prometheus.exposers.hunchentoot, sbcl-prometheus.pushgateway): Remove variables and merge their contents in ... (sbcl-prometheus): ... here. (sbcl-sxql)[native-inputs]: Remove 'prove-asdf'. [inputs]: Remove 'cl-syntax-annot'. Add 'cl-syntax'. (sbcl-1am)[arguments]: Remove 'asd-system-name' keyword and add 'asd-systems' keyword. (sbcl-cl-rdkafka)[inputs]: Remove 'cffi-grovel'. (sbcl-clump-2-3-tree, sbcl-clum-binary-tree): Remove variables and merge their contents in ... (sbcl-clump): ... here. (sbcl-cluffer-base, sbcl-cluffer-standard-line, sbcl-cluffer-standard-buffer, sbcl-cluffer-simple-line, sbcl-cluffer-simple-buffer): Remove variables and merge their contents in ... (sbcl-cluffer): ... here. (sbcl-cl-libsvm-format, sbcl-cl-online-learning, sbcl-cl-random-forest)[native-inputs]: Remove 'prove-asdf'. (sbcl-cl-freetype2)[inputs]: Remove 'cffi-grovel'. (sbcl-clim-lisp, sbcl-clim-basic, sbcl-clim-core, sbcl-esa-mcclim, sbcl-mcclim-fonts, sbcl-automaton, sbcl-persistent, sbcl-drei-mcclim, sbcl-clim, sbcl-mcclim-backend-common, sbcl-mcclim-clx, sbcl-mcclim-fonts-truetype, sbcl-mcclim-fonts-clx-truetype, sbcl-mcclim-clx-truetype, sbcl-mcclim-fontconfig, sbcl-mcclim-harfbuzz, sbcl-mcclim-fonts-clx-truetype, sbcl-mcclim-clx-freetype, sbcl-mcclim-render, sbcl-mcclim-clx-fb, xbcl-mcclim-null, sbcl-clim-postscript-font, sbcl-clim-postscript, sbcl-clim-pdf, sbcl-mcclim-looks, sbcl-mcclim-franz, sbcl-mcclim-bezier-core, sbcl-mcclim-bezier-clx, sbcl-mcclim-bezier, sbcl-mcclim-bitmaps, sbcl-conditional-commands, sbcl-mcclim-layouts-tab, sbcl-mcclim-extensions, sbcl-mcclim-test-util, sbcl-mcclim-raster-image, sbcl-clim-examples): Remove variables and merge their contents in ... (sbcl-mcclim): ... here. (sbcl-mito-core, sbcl-mito-migration, sbcl-lack-middleware-mito): Remove variables and merge their contents in ... (sbcl-mito): ... here. (sbcl-kebab)[native-inputs]: Remove 'prove-asdf'. (sbcl-datafly)[native-inputs]: Remove 'prove-asdf' and 'dbd-sqlite3'. [inputs]: Remove 'cl-syntax-annot'. Add 'cl-syntax'. (sbcl-caveman)[inputs]: Remove 'lack-request', 'lack-response' and 'cl-syntax-annot'. Add 'lack' and 'cl-syntax'. [arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. * gnu/packages/wm.scm (stumpwm, sbcl-stumpwm-ttf-fontsn, sbcl-stumpwm-pass, sbcl-stumpwm-globalwindows, sbcl-stumpwm-swm-gaps, sbcl-stumpwm-net, sbcl-stumpwm-wifi, sbcl-stumpwm-stumptray, sbcl-stumpwm-kbd-layouts): Remove 'asd-system-name' keyword and add 'asd-systems' keyword. (stumpwm-with-slynk)[arguments]: Remove references to variables that don't exist anymore. Guillaume Le Vaillant
2020-09-12build-system: asdf: Switch from bundles to regular compilation....* gnu/packages/lisp.scm (sbcl, ecl)[native-search-paths]: Add 'XDG_CONFIG_DIRS'. * guix/build-system/asdf.scm (asdf-build): Replace 'asd-file' and 'asd-system-name' keywords by 'asd-files' and 'asd-systems'. * guix/build/asdf-build-system.scm (%object-prefix, %lisp-source-install-prefix): Update variables. (install): Update variable. (main-system-name): New variable. (copy-source): Replace 'asd-file' and 'asd-system-name' keywords by 'asd-files' and 'asd-systems'. (configure): New variable. (build, check): Replace 'asd-file' and 'asd-system-name' keywords by 'asd-files' and 'asd-systems'. (create-asd-file, symlink-asd-files): Remove variables. (create-asdf-configuration): New variable. (cleanup-files): Update variable. (%standard-phases): Remove 'create-asd-file' and 'symlink-asd-files' phases. Add 'configure' and 'create-asdf-configuration' phases. * guix/build/lisp-utils.scm (%bundle-install-prefix, normalize-dependency, inputs->asd-file-map, asdf-load-all, compile-system): Remove variables. (compile-systems): New variable. (system-dependencies, compiled-system, generate-system-definition): Remove variable. (test-system): Replace 'asd-file' parameter by 'asd-files'. (generate-executable-for-system): Update variable. (generate-dependency-links, make-asd-file, bundle-asd-file): Remove variables. (make-asdf-configuration): New variable. (build-program, build-image): Set 'XDG_CONFIG_DIRS'. (generate-executable): Update variable. Guillaume Le Vaillant
2020-09-12gnu: python-aiodns: Propagate python-pycares....* gnu/packages/python-web.scm (python-aiodns)[inputs]: Move python-pycares... [propagated-inputs]: ...to here. Danny Milosavljevic
2020-09-12gnu: Add poezio....* gnu/packages/messaging.scm (poezio): New variable. Raghav Gururajan
2020-09-12gnu: Add python-potr....* gnu/packages/python-crypto.scm (python-potr): New variable. Raghav Gururajan
2020-09-12gnu: Add python-slixmpp....* gnu/packages/python-xyz.scm (python-slixmpp): New variable. Raghav Gururajan
2020-09-12gnu: ebusd: Enable MQTT support....* gnu/packages/embedded.scm (ebusd)[inputs]: Add mosquitto. Danny Milosavljevic
2020-09-12gnu: Add mosquitto....* gnu/packages/messaging.scm (mosquitto): New variable. Danny Milosavljevic
2020-09-11gnu: lldpd: Update to 1.0.6....* gnu/packages/networking.scm (lldpd): Update to 1.0.6. Tobias Geerinckx-Rice
2020-09-11gnu: enet: Update to 1.3.16....* gnu/packages/networking.scm (enet): Update to 1.3.16. Tobias Geerinckx-Rice
2020-09-11gnu: batctl: Update to 2020.3....* gnu/packages/networking.scm (batctl): Update to 2020.3. Tobias Geerinckx-Rice
2020-09-11Revert "gnu: dovecot: Set moduledir to global directory."...This reverts commit db0109be42547d5dbb0fc1eb8ae30ccc968ed88b. Same reason as commit d9d88c2ff0d367599d0a851ccf9377c4e21079d6. Tobias Geerinckx-Rice
2020-09-11gnu: padthv1: Update to 0.9.17....* gnu/packages/music.scm (padthv1): Update to 0.9.17. [inputs]: Replace fftw with fftwf. Tobias Geerinckx-Rice
2020-09-11gnu: libetpan: Update to 1.9.4....* gnu/packages/mail.scm (libetpan): Update to 1.9.4. Tobias Geerinckx-Rice
2020-09-11gnu: bsequencer: Update to 1.6.0....* gnu/packages/music.scm (bsequencer): Update to 1.6.0. Ricardo Wurmus
2020-09-11gnu: r-adaptivesparsity: End build phase on #T....* gnu/packages/cran.scm (r-adaptivesparsity)[arguments]: End phase "link-against-armadillo" with Boolean. Ricardo Wurmus
2020-09-11gnu: r-adaptivesparsity: Fix case of "Gaussian"....* gnu/packages/cran.scm (r-adaptivesparsity)[description]: Fix typo. Ricardo Wurmus
2020-09-11gnu: r-qtl: Use CRAN-URI....* gnu/packages/cran.scm (r-qtl)[source]: Use CRAN-URI instead of explicit mirror URL. Ricardo Wurmus
2020-09-11gnu: r-qtl: Correct indentation....* gnu/packages/cran.scm (r-qtl): Reindent. [description]: Reflow paragraphs. Ricardo Wurmus
2020-09-11gnu: r-absfiltergsea: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here... * gnu/packages/cran.scm (r-absfiltergsea): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-diversitree: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-diversitree): Move from here... * gnu/packages/cran.scm (r-diversitree): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-phangorn: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-phangorn): Move from here... * gnu/packages/cran.scm (r-phangorn): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-seurat: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-seurat): Move from here... * gnu/packages/cran.scm (r-seurat): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-maldiquant: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-maldiquant): Move from here... * gnu/packages/cran.scm (r-maldiquant): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-seqminer: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-seqminer): Move from here... * gnu/packages/cran.scm (r-seqminer): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-qtl2: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-qtl2): Move from here... * gnu/packages/cran.scm (r-qtl2): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-qtl: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-qtl): Move from here... * gnu/packages/cran.scm (r-qtl): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-igraph: Move to (gnu packages cran)....* gnu/packages/graph.scm (r-igraph): Move from here... * gnu/packages/cran.scm (r-igraph): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-diffusionmap: Move to (gnu packages cran)....* gnu/packages/graph.scm (r-diffusionmap): Move from here... * gnu/packages/cran.scm (r-diffusionmap): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-adaptivesparsity: Move to (gnu packages cran)....* gnu/packages/machine-learning.scm (r-adaptivesparsity): Move from here... * gnu/packages/cran.scm (r-adaptivesparsity): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-codedepends: Comment why it is in bioconductor.scm....* gnu/packages/bioconductor.scm (r-codedepends): Add comment. zimoun
2020-09-11gnu: Add r-fhtest....* gnu/packages/bioconductor.scm (r-fhtest): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-09-11gnu: Add r-interval....* gnu/packages/bioconductor.scm (r-interval): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-09-11gnu: Add r-perm....* gnu/packages/cran.scm (r-perm): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-09-11gnu: Add r-mlecens....* gnu/packages/cran.scm (r-mlecens): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-09-11gnu: Add r-icens....* gnu/packages/bioconductor.scm (r-icens): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-09-11gnu: r-tidymodels: Update to 0.1.1....* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.1. [propagated-inputs]: Remove r-pillar, r-tidyposterior, r-tidypredict, and r-tidytext; add r-modeldata and r-tidyr. [native-inputs]: Add r-rmarkdown, pandoc, and pandoc-citeproc. Ricardo Wurmus
2020-09-11gnu: r-infer: Update to 0.5.3....* gnu/packages/cran.scm (r-infer): Update to 0.5.3. Ricardo Wurmus
2020-09-11gnu: Add r-modeldata....* gnu/packages/cran.scm (r-modeldata): New variable. Ricardo Wurmus