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2021-02-12gnu: python-invoke: Patch reference to bash....* gnu/packages/python-xyz.scm (python-invoke)[arguments]: Patch the reference to 'bash' in the source. [inputs]: Add bash. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Tanguy Le Carrour
2021-02-12gnu: pari-gp: Update to 2.13.1....* gnu/packages/algebra.scm (pari-gp): Update to 2.13.1. Andreas Enge
2021-02-12gnu: Fix indentation in OpenJDK packages....* gnu/packages/java.scm (openjdk9, openjdk10, openjdk11, openjdk12) (openjdk13, openjdk14): Untabify and indent with Emacs. Leo Prikler
2021-02-12gnu: openjdk@11: Add phase to hardcode libraries....This fixes a NullPointerException related to using fontconfig, see also <https://bugs.gnu.org/41177>. * gnu/packages/java.scm (openjdk11)[arguments]: Add patch-jni-libs phase. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> Björn Höfling
2021-02-12gnu: openjdk@9 : Add phase to hardcode libraries....This fixes a NullPointerException related to using fontconfig, see also <https://bugs.gnu.org/41177>. * gnu/packages/java.scm (openjdk9)[arguments]: Add patch-jni-libs phase. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> Björn Höfling
2021-02-12gnu: bpytop: Don't propagated python-psutil....* gnu/packages/admin.scm (bpytop): Move python-psutil to propagated-inputs. 宋文武
2021-02-12gnu: Add xkeysnail....* gnu/packages/xdisorg.scm (xkeysnail): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Zheng Junjie
2021-02-12gnu: Add bpytop....* gnu/packages/admin.scm (bpytop): New variable. Zheng Junjie
2021-02-12gnu: dwl: Fix command name in description....* gnu/packages/wm.scm (dwl)[description]: Fix typo. 宋文武
2021-02-12gnu: Add dwl....* gnu/packages/wm.scm (dwl): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Zheng Junjie
2021-02-12gnu: pianobar: Update to 2020.11.28....* gnu/packages/music.scm (pianobar): Update to 2020.11.28. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Stefan Reichör
2021-02-12gnu: zfs: Update to 2.0.3....* gnu/packages/file-systems.scm (zfs): Update to 2.0.3. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> raid5atemyhomework
2021-02-11gnu: diffoscope: Update to 166....* gnu/packages/diffoscope.scm (diffoscope): Update to 166. [source]: Add patch to use magic.open compatibility interface. * gnu/packages/patches/diffoscope-revert-to-magic-open.patch: New file. * gnu/local.mk [dist_patch_DATA]: New patch. Vagrant Cascadian
2021-02-11gnu: opam: Update to 2.0.8....* gnu/packages/ocaml.scm (opam): Update to 2.0.8. Julien Lepiller
2021-02-11gnu: emacs-marginalia: Update to 0.3....* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.3. Nicolas Goaziou
2021-02-11gnu: emacs-consult: Update to 0.5....* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.5. Nicolas Goaziou
2021-02-11gnu: bowtie1: Update to 1.3.0....* gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0. [arguments]: Set CC in make flags. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2021-02-11gnu: r-gage: Update to 2.40.1....* gnu/packages/bioinformatics.scm (r-gage): Update to 2.40.1. Ricardo Wurmus
2021-02-11gnu: r-msnbase: Update to 2.16.1....* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.16.1. Ricardo Wurmus
2021-02-11gnu: r-methylkit: Update to 1.16.1....* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.16.1. Ricardo Wurmus
2021-02-11gnu: r-delayedarray: Update to 0.16.1....* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.16.1. Ricardo Wurmus
2021-02-11gnu: r-biomart: Update to 2.46.3....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.46.3. Ricardo Wurmus
2021-02-11gnu: r-edger: Update to 3.32.1....* gnu/packages/bioinformatics.scm (r-edger): Update to 3.32.1. Ricardo Wurmus
2021-02-11gnu: r-iranges: Update to 2.24.1....* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.24.1. Ricardo Wurmus
2021-02-11gnu: r-s4vectors: Update to 0.28.1....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.28.1. Ricardo Wurmus
2021-02-11gnu: r-systempiper: Update to 1.24.3....* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.24.3. Ricardo Wurmus
2021-02-11gnu: r-gseabase: Update to 1.52.1....* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.52.1. Ricardo Wurmus
2021-02-11gnu: r-genefilter: Update to 1.72.1....* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.72.1. Ricardo Wurmus
2021-02-11gnu: r-delayedmatrixstats: Update to 1.12.3....* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.3. Ricardo Wurmus
2021-02-11gnu: r-sparsematrixstats: Update to 1.2.1....* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.2.1. Ricardo Wurmus
2021-02-11gnu: r-scran: Update to 1.18.5....* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.5. Ricardo Wurmus
2021-02-11gnu: r-scuttle: Update to 1.0.4....* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.4. Ricardo Wurmus
2021-02-11gnu: r-beachmat: Update to 2.6.4....* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.4. Ricardo Wurmus
2021-02-11gnu: r-rhdf5lib: Update to 1.12.1....* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.1. Ricardo Wurmus
2021-02-11gnu: r-hdf5array: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.1. Ricardo Wurmus
2021-02-11gnu: r-preprocesscore: Update to 1.52.1....* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.1. Ricardo Wurmus
2021-02-11gnu: r-chemminer: Update to 3.42.1....* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.1. Ricardo Wurmus
2021-02-11gnu: r-gdsfmt: Update to 1.26.1....* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.1. Ricardo Wurmus
2021-02-11gnu: r-cytolib: Update to 2.2.1....* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.1. Ricardo Wurmus
2021-02-11gnu: r-multidataset: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.1. Ricardo Wurmus
2021-02-11gnu: r-clusterprofiler: Update to 3.18.1....* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.1. Ricardo Wurmus
2021-02-11gnu: r-enrichplot: Update to 1.10.2....* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.2. Ricardo Wurmus
2021-02-11gnu: r-matrixgenerics: Update to 1.2.1....* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.2.1. Ricardo Wurmus
2021-02-11gnu: r-diffbind: Update to 3.0.13....* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.13. Ricardo Wurmus
2021-02-11gnu: OpenLDAP: Update to 2.4.57 [security fixes]....Fixes CVE-2020-{36221,36222,36223,36224,36225,36226,36226,36228,36229,36230}. * gnu/packages/openldap.scm (openldap-2.4.57): New variable. (openldap)[replacement]: New field. Leo Famulari
2021-02-11gnu: Add wob....* gnu/packages/xdisorg.scm (wob): New variable. Nicolas Goaziou
2021-02-11gnu: Add gammastep....* gnu/packages/xdisorg.scm (gammastep): New variable. Nicolas Goaziou
2021-02-11gnu: Add font-cozette....* gnu/packages/fonts.scm (font-cozette): New variable. Julien Lepiller
2021-02-11gnu: Add python-crayons....* gnu/packages/python-xyz.scm (python-crayons): New variable. Julien Lepiller
2021-02-11gnu: grammalecte: Update to 2.1.0....* gnu/packages/dictionaries.scm (grammalecte): Update to 2.1.0. Nicolas Goaziou