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2024-01-05gnu: Update my copyright....* gnu/packages/linux.scm: Update copyright header. Change-Id: Idaa9c90e05eba9d0f417f11e86a80bf8119a7a65 Signed-off-by: Leo Famulari <leo@famulari.name> Wilko Meyer
2024-01-05gnu: Add bustools....* gnu/packages/bioinformatics.scm (bustools): New variable. Change-Id: I24a936ad1d630663a41855a833e35fb9caa0155c Ricardo Wurmus
2024-01-05gnu: Add python-louvain-igraph....* gnu/packages/graph.scm (python-louvain-igraph): New variable. Change-Id: I773ee905af81731a12b60ebfa0c2f94e9cb50c45 Ricardo Wurmus
2024-01-05gnu: Add python-snaptools....* gnu/packages/bioinformatics.scm (python-snaptools): New variable. Change-Id: I4f4b32cbbb64472e65d2d88184173b6e1a75e8d2 Ricardo Wurmus
2024-01-05gnu: Add trinityrnaseq....* gnu/packages/bioinformatics.scm (trinityrnaseq): New variable. Change-Id: Ia2c45623576e7e2e51b040b1001b1dd88c1324bb Ricardo Wurmus
2024-01-05gnu: Add guile-srfi-232....* gnu/packages/guile-xyz.scm (guile-srfi-232): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: Id5b3511d51a7f8f391231c2129bec96b78887880 Yuval Langer
2024-01-05gnu: Add guile-srfi-133....* gnu/packages/guile-xyz.scm (guile-srfi-133): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Change-Id: I9466a7def7a90aeabf40c92bd8d78608e8011021 Yuval Langer
2024-01-05gnu: r-edger: Update to 4.0.5....* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.5. Change-Id: Ibf41684a81da1a842f1a8e41309113fb50db6ef9 Ricardo Wurmus
2024-01-05gnu: scvelo: Disable two broken tests....* gnu/packages/bioinformatics.scm (scvelo)[build-system]: Use pyproject-build-system. [arguments]: Disable test_perfect_fit and test_perfect_fit_2d tests because they fail with unexpected results; use G-expression. Change-Id: Ied22a2bc044167012ffaaee15a9626e9f5bccdd5 Ricardo Wurmus
2024-01-05gnu: onnx: Relax requirement on python-protobuf....* gnu/packages/machine-learning.scm (onnx)[arguments]: Add phase 'relax-requirements. (onnx-for-torch2)[arguments]: Delete 'relax-requirements phase. (onnx-optimizer)[arguments]: Same. Change-Id: If3bde363d06f16f2b82e175076041441d29e8d6e Ricardo Wurmus
2024-01-05gnu: emacs-tagedit: Improve package style....* gnu/packages/emacs-xyz.scm (emacs-tagedit)[propagated-inputs]: Reorder inputs alphabetically. [synopsis, description]: Use proper capitalization. Change-Id: I9361a67d61165bf1492df8760f632fef3fe107aa Nicolas Goaziou
2024-01-05gnu: emacs-tagedit: Fix build....* gnu/packages/emacs-xyz.scm (emacs-tagedit)[arguments]: Add phases to remove a spurious require. Change-Id: I37fe4fb9ed0a44514d650d709a49f0e4ae20cbef Nicolas Goaziou
2024-01-05gnu: emacs-ess: Fix build (part 2)....* gnu/packages/statistics.scm (emacs-ess)[arguments]<#:phases>: Use a different process in order to disable two tests. This is a followup to 3c1f25fc7b3cd1942c33a48e71697f94c4c86bc2. Change-Id: I78ee735ef7ee1dea86af602dc714d88bf8185da5 Nicolas Goaziou
2024-01-05gnu: Add r-scrnaseq....* gnu/packages/bioconductor.scm (r-scrnaseq): New variable. Change-Id: Iee25b59af0000f4d2fd7482183b43404840a336c Ricardo Wurmus
2024-01-05gnu: python-tbb: Fix build....* gnu/packages/tbb.scm (python-tbb)[arguments]: Call "python setup.py install" with "--root" argument. Change-Id: I290c45f3d64c0bb6ec57a0e406132b4f42808eec Ricardo Wurmus
2024-01-05gnu: sddm: Update to 0.20.0....* gnu/packages/display-managers.scm (sddm)[version]: Update to 0.20.0. [source]: Remove snippet and use git-fetch method instead. [arguments]: Use gexp, remove outdate comment and handle /include/qt5 dir of qtdeclarative. Change-Id: I6f6bd80291c36b1b80c9ff7f2154593cea2c9d87 Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Feng Shu
2024-01-05gnu: minetest: Update to 5.8.0....Message-ID: <a25dcfdb5bce0dee41ad6b1d8db9ed6ea9a10650.1703461039.git.adam.faiz@disroot.org> In-Reply-To: <33df226b8a59a668741a971401024bea785d203d.1703461038.git.adam.faiz@disroot.org> References: <33df226b8a59a668741a971401024bea785d203d.1703461038.git.adam.faiz@disroot.org> From: AwesomeAdam54321 <adam.faiz@disroot.org> Date: Mon, 25 Dec 2023 07:19:27 +0800 Subject: [PATCH 2/2] gnu: minetest: Update to 5.8.0. * gnu/packages/minetest.scm (minetest, minetest-data): Update to 5.8.0. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Adam Faiz
2024-01-05gnu: irrlicht-for-minetest: Update to 1.9.0mt13....Message-ID: <33df226b8a59a668741a971401024bea785d203d.1703461178.git.adam.faiz@disroot.org> In-Reply-To: <cover.1703461178.git.adam.faiz@disroot.org> References: <cover.1703461178.git.adam.faiz@disroot.org> From: AwesomeAdam54321 <adam.faiz@disroot.org> Date: Mon, 25 Dec 2023 07:16:25 +0800 Subject: [PATCH 1/2] gnu: irrlicht-for-minetest: Update to 1.9.0mt13. * gnu/packages/games.scm (irrlicht-for-minetest): Update to 1.9.0mt13. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Adam Faiz
2024-01-05gnu: grml-zsh-config: Update to 0.19.6....* gnu/packages/shellutils.scm (grml-zsh-config): Update to 0.19.6. Change-Id: I0609ec27e98fe1c842cb76d0aaebb491b2e966fe Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> kiasoc5
2024-01-05gnu: Add python-djitellopy....* gnu/packages/python-xyz.scm (python-djitellopy): New variable. Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Change-Id: I3e1fe9ecc7c02cb22a979c494fd76db678019e2e Sharlatan Hellseher
2024-01-05gnu: Add python-av....* gnu/packages/python-xyz.scm (python-av): New variable. Sharlatan Hellseher
2024-01-04gnu: icecat-minimal: Fix WM Class....* gnu/packages/gnuzilla.scm (icecat-minimal)[arguments]: Set the MOZ_APP_REMOTINGNAME environment variable and replace "Navigator" with "Icecat" in icecat.desktop. The WM Class should be "Navigator, Icecat" instead of "Navigator, icecat-default". StartupWMClass in icecat.desktop should be "Icecat" instead of "Navigator" so that other browsers (they often have the "Navigator" class) won't be associated with Icecat. Change-Id: I57bec957938c56e8acf9cd5c955e57dbad081678 Clément Lassieur
2024-01-04gnu: libsigsegv: Fix cross-compiling....* gnu/packages/libsigsegv.scm (libsigsegv)[arguments]: When cross-compiling add a phase to not include extra headers. Change-Id: Ie2d23fd037ed533dacf08acf52771b7ab1d446ac Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Efraim Flashner
2024-01-04gnu: gmp: Fix building on x86_64-linux-gnux32....* gnu/packages/multiprecision.scm (gmp)[arguments]: When building for x86_64-linux-gnux32 add a configure-flag to use the x32 ABI. Change-Id: I321c707b3f7df5eeb338f03dacf08b29181ecf53 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Efraim Flashner
2024-01-04gnu: openssl: Fix building on x86_64-linux-gnux32....* gnu/packages/tls.scm (target->openssl-target): Add entry for x86_64-linux-gnux32. Change-Id: Icbbdb76134da0811b8493c55ca2d3acdb77c5883 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Efraim Flashner
2024-01-04gnu: Add support for x86_64-linux-gnux32....* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add entry for x86_64-linux-gnux32. * gnu/packages/gcc.scm (gcc-configure-flags-for-triplet): Add configure-flag for x86_64-linux-gnux32. * guix/platforms/x86.scm (x86_64-linux-gnux32): New variable. * guix/utils.scm (gnu-triplet->nix-system): Force x86_64-linux-gnux32 to output a different nix-system than x86_64-linux-gnu. Change-Id: I519fea2f8357e4b9895ede05fe8a5e373e9b034a Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Efraim Flashner
2024-01-04gnu: emacs-ess: Fix build....* gnu/packages/statistics.scm (emacs-ess)[arguments]<#:phases>: Fix test file lists for skipped tests. Change-Id: I0ef581080811535dbf32118c3ed37f91e9f58cfe Nicolas Goaziou
2024-01-04gnu: emacs-ess: Improve package style....* gnu/packages/statistics.scm (emacs-ess)[origin]: Remove trailing #T from snippet. Use G-expressions. [arguments]: Use G-expressions. [inputs]: Remove labels. Change-Id: Iaaf6371577e00c2cc1da0192e5f9f9102b4e76b0 Nicolas Goaziou
2024-01-04gnu: emacs-ess: Update to 18.10.2-1.3691ecc....* gnu/packages/statistics.scm (emacs-ess): Update to 18.10.2-1.3691ecc. [arguments]: Skip failing tests. * gnu/packages/patches/emacs-ess-fix-obsolete-function-alias.patch: Delete file. * gnu/local.mk: Apply file removal. Change-Id: If8cd54c32c44cd2465f2cdb78317e8f8339f6bc3 Nicolas Goaziou
2024-01-04gnu: cl-gltf: Update to 2.0.0-0.dab186e....* gnu/packages/lisp-xyz.scm (sbcl-cl-gltf): Update to 2.0.0-0.dab186e. Change-Id: I7e9d7f41774f433192dba30225499f36061bf280 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: Add cl-3d-spaces....* gnu/packages/lisp-xyz.scm (sbcl-3d-spaces, cl-3d-spaces, ecl-3d-spaces): New variables. Change-Id: Ib15c90168f36c10697d67f69457de9c4b7d28666 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: Add cl-3d-math....* gnu/packages/lisp-xyz.scm (sbcl-3d-math, cl-3d-math, ecl-3d-math): New variables. Change-Id: Iaa5c63d7fb535b37c11528f5d7802ea62ebd0894 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: Add cl-type-templates....* gnu/packages/lisp-xyz.scm (sbcl-type-templates, cl-type-templates, ecl-type-templates): New variables. Change-Id: I001451f5cdc3a5a65941982f11d756ecd7a1678a Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: cl-clingon: Update to 0.5.0-0.379fc41....* gnu/packages/lisp-xyz.scm (sbcl-clingon): Update to 0.5.0-0.379fc41. Change-Id: I756845165eba3610bda8ec7c3598c797ced411a9 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: cl-machine-state: Update to 1.0.0-2.3d258ee....* gnu/packages/lisp-xyz.scm (sbcl-machine-state): Update to 1.0.0-2.3d258ee. [home-page]: Fix URL. Change-Id: Ibeb3382f3722070f6c4b3fbcb19bda34addc6273 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: cl-coalton: Update to 0.0.1-4.9393424....* gnu/packages/lisp-xyz.scm (sbcl-coalton): Update to 0.0.1-4.9393424. [inputs]: Remove sbcl-json-streams and sbcl-split-sequence. Add sbcl-concrete-syntax-tree, sbcl-eclector and sbcl-named-readtables. Change-Id: Ibedd5bcf9b76e0300775503119babc4d4511e596 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: cl-eclector: Update to 0.9.0-0.d499b09....* gnu/packages/lisp-xyz.scm (sbcl-eclector): Update to 0.9.0-0.d499b09. Change-Id: Idb4dd189c39eed98b7992271a5dd4354c02ef641 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: cl-nibbles: Update to 0.14-3.a46a677....* gnu/packages/lisp-xyz.scm (sbcl-nibbles): Update to 0.14-3.a46a677. [file-name]: Rename to cl-nibbles. Move above sha256. Change-Id: I6a95f3f24b043d7e2c192840d9bad62f5c661fb2 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: cl-numpy-file-format: Update to 0.0.0-2.e440c7b....* gnu/packages/lisp-xyz.scm (sbcl-numpy-file-format): Update to 0.0.0-2.e440c7b. Change-Id: I4b8b343ebfa7b0be04f54174e5bed479670a9e94 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: cl-atomics: Update to 1.0.0-2.b747702....* gnu/packages/lisp-xyz.scm (sbcl-atomics): Update to 1.0.0-2.b747702. Change-Id: I288ce4c336f7347ed596897afa24cd2669a94a4e Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: cl-dexador: Update to 0.9.15-2.051cbb7....* gnu/packages/lisp-xyz.scm (sbcl-dexador): Update to 0.9.15-2.051cbb7. [inputs]: Remove sbcl-cl-reexport. Add sbcl-trivial-garbage. [native-inputs]: Remove sbcl-cl-ppcre, sbcl-local-time, sbcl-prove, sbcl-trivial-features, and add sbcl-rove to commented list. Change-Id: Ic451756d90d84954aeddf0fab2c7216a63985d92 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: cl-cmd: Improve package style....* gnu/packages/lisp-xyz.scm (sbcl-cmd)[arguments]: Use G-expressions. Move above inputs. [inputs]: Remove labels. Sort. Change-Id: I7cafea4cce3b2dfb89b21c43d71b96767d55c7f5 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: cl-cmd: Update to 0.0.1-8.0164d57....* gnu/packages/lisp-xyz.scm (sbcl-cmd): Update to 0.0.1-8.0164d57. Change-Id: I1483861da5373f8bebe393ca7f8e80ad7f84cb06 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Paul A. Patience
2024-01-04gnu: python-hicexplorer: Fix build....* gnu/packages/bioinformatics.scm (python-hicexplorer)[snippet]: Remove catchall pattern of patch version numbers in setup.py. Troy Figiel
2024-01-04gnu: kicad: Update to 7.0.10....* gnu/packages/engineering.scm (kicad): Update to 7.0.10. Change-Id: I7461d2d6736a4618c52767fecc6c0af2c531c1f5 Peter Polidoro
2024-01-04gnu: emacs-vterm: Update to 0.0.2-1-c3a3a23....* gnu/packages/emacs-xyz.scm (emacs-vterm): Update to 0.0.2-1-c3a3a23. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Change-Id: I90238380792aee1b5f13fdad8ef4164048e2bab8 Cayetano Santos
2024-01-04gnu: emacs-xah-fly-keys: Update to 24.19.20231204080156....* gnu/packages/emacs-xyz.scm (emacs-xah-fly-keys): Update to 24.19.20231204080156. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Change-Id: I1785fced0354ecc837bbe28323a86a3cad506035 casaca
2024-01-04gnu: emacs-hyperspace: Propagated inputs....* gnu/packages/emacs-xyz.scm (emacs-hyperspace): Use propagated inputs for runtime dependencies. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Change-Id: Id090075ac3ac6531c25aee909739365f1b920446 Sergey Trofimov
2024-01-04gnu: emacs-discomfort: Propagate inputs....* gnu/packages/emacs-xyz.scm (emacs-discomfort): Use propagated-inputs for runtime dependencies. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Change-Id: Ifbe4d9229ed1714eae0441d5fc4f600cf6a896dc Sergey Trofimov
2024-01-04gnu: emacs-debase: Remove unused inputs....* gnu/packages/emacs-xyz.scm (emacs-debase): Remove empty inputs list. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Change-Id: I3d193fd901de4f79cc6309f80316b0502424e61c Sergey Trofimov