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2021-06-01maint: Require Guile 3.0.Ludovic Courtès
* configure.ac: Require Guile 3.0. * doc/guix.texi (Requirements): Adjust accordingly. * gnu/packages/package-management.scm (guile2.2-guix): Remove. * guix/lint.scm (exception-with-kind-and-args?): Remove 'cond-expand'. * guix/scripts/deploy.scm (deploy-machine*): Likewise. * guix/store.scm (call-with-store): Likewise. * guix/swh.scm (http-get*, http-post*): Likewise. * guix/ui.scm (without-compiler-optimizations, guard*) (call-with-error-handling): Likewise.
2021-06-01gnu: llvm-7: Update to 7.1.0.Efraim Flashner
* gnu/packages/llvm.scm (llvm-7): Update to 7.1.0.
2021-06-01gnu: unbound: Enable DoH support.Marius Bakke
* gnu/packages/dns.scm (unbound)[inputs]: Add NGHTTP2:LIB. [arguments]: Add "--with-libnghttp2" to #:configure-flags.
2021-06-01gnu: ungoogled-chromium: Update to 91.0.4472.77-0.6802c88.Marius Bakke
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 91. (%chromium-version): Set to 91.0.4472.77. (%ungoogled-revision): Set to 91.0.4472.77-1-0-g6802c88. (%debian-patches): Remove obsolete patch. (%ungoogled-origin): Update hash. (ungoogled-chromium-snippet): Add substitution for an unbundling file. (ungoogled-chromium): Update hash. [arguments]: Add a substitution previously provided by a Debian patch. [inputs]: Change from ICU-68 to ICU-69.
2021-06-01gnu: icu4c: Add 69.1.Marius Bakke
* gnu/packages/icu4c.scm (icu4c-69): New public variable.
2021-06-01gnu: gcc-9: Update to 9.4.0.Efraim Flashner
* gnu/packages/gcc.scm (gcc-9): Update to 9.4.0.
2021-06-01gnu: musescore: Add missing QML imports.Leo Prikler
This fixes an issue wherein the palettes sidebar would turn up empty. * gnu/packages/music.scm (musescore)[build-system]: Use qt-build-systems. [inputs]: Add qtgraphicaleffects.
2021-06-01gnu: rust-cbindgen@0.17: Update to 0.19.0.Jonathan Brielmaier
* gnu/packages/rust-apps.scm (rust-cbindgen-0.17): Update to 0.19.0 and rename to rust-cbindgen-0.19.
2021-06-01gnu: Add bamutils.Roel Janssen
* gnu/packages/bioinformatics.scm (bamutils): New variable.
2021-06-01gnu: sbcl: Update to 2.1.5.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl): Update to 2.1.5.
2021-06-01gnu: Add python-vedo.Paul Garlick
* gnu/packages/python-science.scm (python-vedo): New variable.
2021-06-01gnu: vtk: Wrap python modules.Paul Garlick
* gnu/packages/image-processing.scm (vtk)[inputs]: Add python. [arguments]: Add VTK_WRAP_PYTHON and VTK_PYTHON_VERSION flags.
2021-06-01gnu: guix: Update to 1.3.0-3.50dfbbf.Mathieu Othacehe
* gnu/packages/package-management.scm (guix): Update to 1.3.0-3.50dfbbf.
2021-06-01gnu: Add python-sinfo.Roel Janssen
* gnu/packages/python-xyz.scm (python-sinfo): New variable.
2021-06-01gnu: Add python-stdlib-list.Roel Janssen
* gnu/packages/python-xyz.scm (python-stdlib-list): New variable.
2021-06-01gnu: guix-build-coordinator: Update to 0-30.f9af463.Christopher Baines
* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-30.f9af463.
2021-05-31gnu: emacs-tramp: Update to 2.5.0.5.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-tramp): Update to 2.5.0.5.
2021-05-31gnu: emacs-solaire-mode: Update to 2.0.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-solaire-mode): Update to 2.0.0.
2021-05-31gnu: texmacs: Update to 1.99.21.Nicolas Goaziou
* gnu/packages/text-editors.scm (texmacs): Update to 1.99.21.
2021-05-31gnu: emacs-moody: Update to 0.5.5.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-moody): Update to 0.5.5.
2021-05-31gnu: emacs-posframe: Update to 1.0.3.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.0.3.
2021-05-31gnu: lagrange: Update to 1.5.0.Solene Rapenne via Guix-patches via
* gnu/packages/web-browsers.scm (lagrange): Update to 1.5.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-31gnu: Add emacs-eyebrowse.Stefan Reichör
* gnu/packages/emacs-xyz.scm (emacs-eyebrowse): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-31gnu: Add python-easy-ansi.Stefan Reichör
* gnu/packages/python-xyz.scm (python-easy-ansi): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-31gnu: Add emacs-evil-paredit.Xinglu Chen
* gnu/packages/emacs-xyz.scm (emacs-evil-paredit): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-31gnu: tome4: Update to 1.7.3.Solene Rapenne via Guix-patches via
* gnu/packages/games.scm (tome4): Update to 1.7.3. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-31gnu: bits: Use git-version and git-file-name.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bits)[version]: Use git-version. [source]: Use git-file-name.
2021-05-31gnu: piranha: Use git-version.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (piranha)[version]: Use git-version.
2021-05-31gnu: r-chipkernels: Use git-version and git-file-name.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-chipkernels)[version]: Use git-version. [source]: Use git-file-name.
2021-05-31gnu: f-seq: Use git-version and git-file-name.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (f-seq)[version]: Use git-version. [source]: Use git-file-name.
2021-05-31gnu: bismark: Use git-file-name.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bismark)[source]: Use git-file-name.
2021-05-31gnu: filevercmp: Use git-version.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (filevercmp)[version]: Use git-version; bind "revision" in outer let.
2021-05-31gnu: r-chipseeker: Move out of experiment section.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chipseeker): Move the package from the "experiment" section to the section for regular Bioconductor packages.
2021-05-31gnu: r-spp: Move to (gnu packages bioconductor).Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-spp): Move from here... * gnu/packages/bioconductor.scm (r-spp): ...to here.
2021-05-31gnu: r-geneoverlap: Move out of experiment section.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-geneoverlap): Move the package definition out of the "experiment" section into the section for regular Bioconductor packages.
2021-05-31gnu: r-phantompeakqualtools: Let-bind commit, set revision to 1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-phantompeakqualtools): Bind the commit outside of the package value. [version]: Use git-version. [source]: Use git-file-name.
2021-05-31gnu: r-methylkit: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-methylkit): Move from here... * gnu/packages/bioconductor.scm (r-methylkit): ...to here.
2021-05-31gnu: r-copywriter: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-copywriter): Move from here... * gnu/packages/bioconductor.scm (r-copywriter): ...to here.
2021-05-31gnu: r-copyhelper: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-copyhelper): Move from here... * gnu/packages/bioconductor.scm (r-copyhelper): ...to here. [source]: Repalce 'string-append' by 'bioconductor-uri' with 'experiment.
2021-05-31gnu: r-chipseq: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-chipseq): Move from here... * gnu/packages/bioconductor.scm (r-chipseq): ...to here.
2021-05-31gnu: r-rhdf5: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-rhdf5): Move from here... * gnu/packages/bioconductor.scm (r-rhdf5): ...to here.
2021-05-31gnu: r-annotationfilter: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-annotationfilter): Move from here... * gnu/packages/bioconductor.scm (r-annotationfilter): ...to here.
2021-05-31gnu: r-rhdf5filters: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-rhdf5filters): Move from here... * gnu/packages/bioconductor.scm (r-rhdf5filters): ...to here.
2021-05-31gnu: r-tximport: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-tximport): Move from here... * gnu/packages/bioconductor.scm (r-tximport): ...to here.
2021-05-31gnu: r-mutationalpatterns: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Move from here... * gnu/packages/bioconductor.scm (r-mutationalpatterns): ...to here.
2021-05-31gnu: r-rcas: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-rcas): Move from here... * gnu/packages/bioconductor.scm (r-rcas): ...to here.
2021-05-31gnu: r-bamsignals: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-bamsignals): Move from here... * gnu/packages/bioconductor.scm (r-bamsignals): ...to here.
2021-05-31gnu: r-rhtslib: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-rhtslib): Move from here... * gnu/packages/bioconductor.scm (r-rhtslib): ...to here.
2021-05-31gnu: r-zlibbioc: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-zlibbioc): Move from here... * gnu/packages/bioconductor.scm (r-zlibbioc): ...to here.
2021-05-31gnu: r-seqlogo: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-seqlogo): Move from here... * gnu/packages/bioconductor.scm (r-seqlogo): ...to here.
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