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2022-12-13gnu: python-h5netcdf: Update to 1.1.0.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-h5netcdf): Update to 1.1.0. [build-system]: Use pyproject-build-system, to simplify package. [description]: Style content and add links to referenced projects. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13gnu: python-flasgger: Update to 0.9.5.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-flasgger): Update to 0.9.5. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase; add 'prepare-check phase; disable "test_swag" test via #:test-flags. [native-inputs]: Add python-apispec-webframeworks and python-flask-jwt.
2022-12-13gnu: python-pyjwt: Update to 2.6.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pyjwt): Update to 2.6.0. [build-system]: Use pyproject-build-system. [arguments]: Remove. [native-inputs]: Add pytohn-coverage, python-pre-commit, python-sphinx, and python-sphinx-rtd-theme.
2022-12-13gnu: python-apispec: Update to 6.0.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-apispec): Update to 6.0.2. [build-system]: Use pyproject-build-system. [arguments]: Disable test through test-flags, not by replacing the 'check phase. [propagated-inputs]: Remove python-pyyaml; add python-packaging. [native-inputs]: Add python-flake8, python-flake8-bugbear, python-mypy, python-pre-commit, and python-pyyaml.
2022-12-13gnu: python-marshmallow: Update to 3.19.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-marshmallow): Update to 3.19.0. [build-system]: Use pyproject-build-system. [propagated-inputs]: Remove python-dateutil and python-simplejson; add python-packaging. [native-inputs]: Add python-flake8, python-flake8-bugbear, python-mypy, python-pre-commit, and python-simplejson.
2022-12-13gnu: python-bokeh: Skip failing PIL test.Ricardo Wurmus
The test compares base64-encoded gifs; the gifs look identical but the base64-encoded data differs. Since the result seems fine, disabling this PIL test is probably okay. * gnu/packages/python-xyz.scm (python-bokeh)[arguments]: Ignore failing test_transform_PIL test.
2022-12-12gnu: python-anndata: Use pyproject-build-system.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-anndata)[build-system]: Use pyproject-build-system. [arguments]: Replace custom 'build phase with 'set-version phase; remove custom 'install phase; disable doctest via build phase 'disable-doctests and the #:test-flags property. [propagated-inputs]: Add python-scikit-learn. [native-inputs]: Add python-boltons.
2022-12-12gnu: python-zarr: Update to 2.13.3.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.13.3.
2022-12-12gnu: python-numcodecs: Update to 0.10.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-numcodecs): Update to 0.10.2. [build-system]: Use pyproject-build-system. [arguments]: Enable tests; add phase 'build-extensions; remove custom 'check phase. [propagated-inputs]: Add python-entrypoints and python-typing-extensions-next.
2022-12-12gnu: python-typer: Simplify by using pyproject-build-system.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-typer)[build-system]: Use pyproject-build-system. [arguments]: Remove extra quoting; remove custom 'build phase; remove custom 'install phase; remove custom 'check phase; add 'pre-check phase. [synopsis]: Pull onto the same line. [description]: Reformat.
2022-12-11gnu: yajl: Drop custom ‘lib-’ prefix.Tobias Geerinckx-Rice
* gnu/packages/web.scm (yajl): New variable, renamed from… (libyajl): …this one, which is now a DEPRECATED-PACKAGE alias of yajl. Adjust all users.
2022-12-12gnu: Add python-pomegranate.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pomegranate): New variable.
2022-12-12gnu: Add python-pygtrie.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pygtrie): New variable.
2022-12-12gnu: Add python-apispec-webframeworks.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-apispec-webframeworks): New variable.
2022-12-12gnu: Add python-fit-nbinom.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-fit-nbinom): New variable.
2022-12-12gnu: Add python-py4j.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-py4j): New variable.
2022-12-11gnu: python-seaborn: Update to 0.12.0.Arun Isaac
* gnu/packages/python-xyz.scm (python-seaborn): Update to 0.12.0. [source]: Remove patches. [arguments]: Import (ice-9 match) module. Remove patch-more-tests and start-xserver phases. Replace build and install phases. Fix pytest command in check phase. [native-inputs]: Add python-flit-core and python-pypa-build. Remove xorg-server-for-tests. * gnu/packages/patches/python-seaborn-2690.patch, gnu/packages/patches/python-seaborn-kde-test.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Unregister them.
2022-12-06gnu: Add python-pint.Peter Polidoro
* gnu/packages/python-xyz.scm (python-pint): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-06gnu: Add python-simple-rlp.Attila Lendvai
* gnu/packages/python-xyz.scm (python-simple-rlp): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-06gnu: vdirsyncer: Update to 0.19.0.Efraim Flashner
* gnu/packages/dav.scm (vdirsyncer): Update to 0.19.0. [arguments]: Remove trailing #t in phases. Remove phase generating the manpage. [native-inputs]: Add python-aioresponses, python-click, python-trustme, python-pytest-asyncio, python-pytest-cov, python-pytest-httpserver. Remove python-pytest-localserver, python-pytest-subtesthack, python-urllib3, python-wsgi-interpreter. [inputs]: Remove field. [propagated-inputs]: Add python-aiohttp, python-aiostream. Remove python-click-threading. * gnu/packages/python-xyz.scm (python-click-5): Remove variable.
2022-12-05gnu: python-hy: Update to 0.25.0.Vinicius Monego
* gnu/packages/python-xyz.scm (python-hy): Update to 0.25.0.
2022-12-05gnu: python-funcpaserlib: Update to 1.0.1.Vinicius Monego
* gnu/packages/python-xyz.scm (python-funcpaserlib): Update to 1.0.1.
2022-12-02gnu: Add python-pybloom-live.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pybloom-live): New variable.
2022-11-28gnu: Add python-dm-tree.Nicolas Graves
* gnu/packages/python-xyz.scm (python-dm-tree): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-11-28gnu: Add python-pynixutil.Hilton Chain
* gnu/packages/python-xyz.scm (python-pynixutil): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-11-27gnu: Add python-attrdict.Marius Bakke
* gnu/packages/python-xyz.scm (python-attrdict): New variable.
2022-11-23gnu: python-munkres: Conditionally disable failing test.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-munkres)[arguments]: Add phase "disable-test" to patch test suite.
2022-11-22gnu: python-pudb: Add python-numpy native-input.jgart
This is an optional test dependency. * gnu/packages/python-xyz.scm (python-pudb)[native-inputs]: Add python-numpy. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-11-22gnu: python-py3dns: Fix build failure.Marius Bakke
* gnu/packages/python-xyz.scm (python-py3dns)[arguments]: Remove sanity check.
2022-11-22gnu: python-parallel: Add missing input.Marius Bakke
* gnu/packages/python-xyz.scm (python-parallel)[propagated-inputs]: Add PYTHON-SIX.
2022-11-22gnu: Remove python-enum34.Marius Bakke
This compatibility package fails to build and has no users in Guix. * gnu/packages/python-xyz.scm (python-enum34): Remove variable.
2022-11-22gnu: python-rnc2rng: Update to 2.6.6.Marius Bakke
* gnu/packages/python-xyz.scm (python-rnc2rng): Update to 2.6.6.
2022-11-22gnu: python-bigfloat: Update to 0.4.0.Marius Bakke
* gnu/packages/python-xyz.scm (python-bigfloat): Update to 0.4.0. [propagated-inputs]: Add PYTHON-SIX.
2022-11-22gnu: python-socksipychain: Add missing input.Marius Bakke
* gnu/packages/python-xyz.scm (python-socksipychain)[propagated-inputs]: Add PYTHON-SIX.
2022-11-21gnu: Add python-doxypypy.Petr Hodina
* gnu/packages/python-xyz.scm (python-doxypypy): New variable. Signed-off-by: Marius Bakke <marius@gnu.org>
2022-11-21gnu: Add python-doxyqml.Petr Hodina
* gnu/packages/python-xyz.scm (python-doxyqml): New variable. Signed-off-by: Marius Bakke <marius@gnu.org>
2022-11-20gnu: python-pbkdf2: Don't use python-pycrypto.Marius Bakke
* gnu/packages/python-xyz.scm (python-pbkdf2)[propagated-inputs]: Remove.
2022-11-19gnu: Remove coin3D@3.Marius Bakke
* gnu/packages/graphics.scm (coin3D): Take the body from ... (coin3D-4): ... this now-deprecated variable. * gnu/packages/engineering.scm (freecad)[inputs]: Change from COIN3D-4 to COIN3D. * gnu/packages/python-xyz.scm (python-pivy)[inputs]: Likewise. * gnu/packages/qt.scm (soqt)[inputs]: Likewise.
2022-11-19gnu: python-check-manifest: Update to 0.48.0.Marius Bakke
* gnu/packages/python-xyz.scm (python-check-manifest): Update to 0.48.0. [build-system]: Change to PYPROJECT-BUILD-SYSTEM. [arguments]: Add #:test-flags. [native-inputs]: Remove PYTHON-MOCK. Add PYTHON-PYTEST. [propagated-inputs]: Add PYTHON-PYPA-BUILD, PYTHON-SETUPTOOLS, and PYTHON-TOMLI.
2022-11-19gnu: python-check-manifest: Use the 'fixed' git for tests.Marius Bakke
* gnu/packages/python-xyz.scm (python-check-manifest)[native-inputs]: Change from GIT to GIT-MINIMAL/FIXED.
2022-11-19gnu: Remove obsolete variable.Marius Bakke
* gnu/packages/python-xyz.scm (python-packaging-next): Remove variable. * gnu/packages/openstack.scm (python-oslo.utils)[propagated-inputs]: Change from PYTHON-PACKAGING-NEXT to PYTHON-PACKAGING.
2022-11-19gnu: python-check-manifest: Relax git security settings in tests.Ontje Lünsdorf
* gnu/packages/python-xyz.scm (python-check-manifest)[arguments]: Allow git submodule commands via file protocol during testing. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-11-18gnu: s3cmd: Fix program name in output.Matthew James Kraai
* gnu/packages/python-xyz.scm (s3cmd)[arguments]: Add a new 'hide-wrapping phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-11-17gnu: Adjust users of deprecated packages.Marius Bakke
* gnu/packages/databases.scm (apache-arrow-0.16)[inputs]: Change from GOOGLE-BROTLI to BROTLI. * gnu/packages/image.scm (libjxl)[propagated-inputs]: Likewise. * gnu/packages/python-xyz.scm (python-logbook)[native-inputs]: Change from PYTHON-GOOGLE-BROTLI to PYTHON-BROTLI.
2022-11-17gnu: python-mistune-next: Update to 2.0.4.Efraim Flashner
* gnu/packages/python-xyz.scm (python-mistune-next): Update to 2.0.4. [arguments]: Add custom 'check phase. [native-inputs]: Remove python-nose, add python-pytest.
2022-11-15gnu: python-mdurl: Enable tests.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-mdurl): Enable tests. [source]: Use git checkout with tests. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-pytest. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-11-15gnu: python-colorful: Enable tests.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-colorful): Enable tests. [source]: Use git checkout which has tests. [build-system]: Use pyproject-build-system. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-11-15gnu: python-qtconsole: Use python-pyqt-without-webkit.Csepp
* gnu/packages/python-xyz.scm (python-qtconsole)[propagated-inputs]: Use python-pyqt-without-qtwebkit. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-11-14gnu: python-readability-lxml: Add source file-name.Efraim Flashner
* gnu/packages/python-xyz.scm (python-readability-lxml)[source]: Add file-name field.
2022-11-06gnu: python-glymur: Update to 0.12.0.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-glymur): Update to 0.12.0. [build-system]: python-build-system -> pyproject-build-system. [arguments]: Drop redundant phases. [native-inputs]: Remove python-pypa-build. Signed-off-by: Christopher Baines <mail@cbaines.net>
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