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2024-06-30gnu: Add python-fast-histogram.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-fast-histogram): New variable. Change-Id: Ibecdd87db9c132052a8eca76c01108c4f6e624c4
2024-06-30gnu: Add python-corner.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-corner): New variable. Change-Id: I75c3a88ba4b729fb7c9a50dd85a00b22cdcaa828
2024-06-26gnu: Add python-spin.Vinicius Monego
* gnu/packages/python-science.scm (python-spin): New variable. Change-Id: I794845d559f3f4f3ab9cf98b0e4a4321b470f7f8 Signed-off-by: jgart <jgart@dismail.de>
2024-06-16gnu: Add python-formulaic.Ricardo Wurmus
* gnu/packages/python-science.scm (python-formulaic): New variable. Change-Id: Ib21bfdc3050c042abc7494501d7b0409be8ed3bb
2024-06-16gnu: Add python-scikit-survival.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-survival): New variable. Change-Id: I657f5d737280cac74f93f7f3d2b56a9a0a41588e
2024-05-30gnu: python-unyt: Fix version detection.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-unyt): Fix version detection. [native-inputs]: Add python-setuptools-scm. Change-Id: I96e7d2530b15299a39911bebf62b76a9191ea91b Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-26gnu: python-scikit-image: Disable test_ellipse_parameter_stability.Christopher Baines
As it's flaky, see https://github.com/scikit-image/scikit-image/issues/7061 * gnu/packages/python-science.scm (python-scikit-image)[arguments]: Add #:test-flags. Change-Id: Ic1fc301eb0fad5330c34780ce096c446c1076824
2024-05-22gnu: python-pandera: Update to 0.18.0, fix build.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pandera): Update to 0.18.0. [arguments] <#:test-flags>: Disable one more failing test. Change-Id: I4d3f59dae8d90ea0afbe9cc932fc6163def282c9
2024-05-11gnu: python-scikit-image: Update to 0.23.2.Vinicius Monego
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.23.2. Change-Id: Ief01a2aef5202dd859f9337a45105088d605509e
2024-05-05gnu: python-gpy: Update to 1.13.1.Ricardo Wurmus
* gnu/packages/python-science.scm (python-gpy): Update to 1.13.1. [source]: Remove snippet. [build-system]: Use pyproject-build-system. [arguments]: Remove phase 'remove-plotting-tests; add phase 'compatibility. [native-inputs]: Remove python-nose and python-climin; add python-pytest, python-matplotlib, and python-pods. Change-Id: I1ed95e3ad2e8444979fd2cf272d7f3104b1bf2ec
2024-05-05gnu: python-paramz: Update to 0.9.6.Ricardo Wurmus
* gnu/packages/python-science.scm (python-paramz): Update to 0.9.6. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-nose. Change-Id: I62a2f7ecf600f48da74f4d233e108360a583d5ca
2024-05-05gnu: python-pingouin: Update to 0.5.4.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.4. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase; add 'sklearn-compatibility phase; skip one test. Change-Id: I8d13f15558eadee0547f04bc4bb89a0fd0e0767b
2024-05-05gnu: python-plotnine: Fix version string.Ricardo Wurmus
* gnu/packages/python-science.scm (python-plotnine)[native-inputs]: Add python-setuptools-scm. Change-Id: I0fc2f3ad7edcdaaa5e3bf9774bc6840c8fbeb727
2024-05-05gnu: python-plotnine: Disable test because of harmless warning.Ricardo Wurmus
* gnu/packages/python-science.scm (python-plotnine)[arguments]: Disable test_save_method which prints an unexpected warning.. Change-Id: I28a20b85ee549311bed534efbf801db930419ca9
2024-05-05gnu: python-dask: Propagate python-dask-expr.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-dask/bootstrap): New variable. (python-dask)[propagated-inputs]: Add python-dask-expr. * gnu/packages/python-science.scm (python-dask-expr)[propagated-inputs]: Remove python-dask. [native-inputs]: Add python-dask/bootstrap. Change-Id: I1196641425421c7dde94c6fea8d573e78db9c402
2024-05-05gnu: python-pandas-stubs: Accept numpy 1.23.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-stubs)[arguments]: Add phase 'relax-requirements. Change-Id: I62e04574d53abd7d67068d08475522dd8989dcca
2024-05-05gnu: python-pandas-stubs: Update tests.Ricardo Wurmus
This is a follow-up to adding ORC support to pyarrow. * gnu/packages/python-science.scm (python-pandas-stubs)[arguments]: Disable more tests that are due to enabling ORC support to pyarrow. Change-Id: I8c3ca6afff8128792738251c85a1dba3dc3b0569
2024-05-05gnu: Add python-scikit-build-core.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-build-core): New variable. Change-Id: If234d19d720afe88f6893bdd36fcc4955a45c5d3
2024-05-05gnu: python-distributed: Update to 2024.4.2.Ricardo Wurmus
* gnu/packages/python-science.scm (python-distributed): Update to 2024.4.2. [propagated-inputs]: Add python-dask-expr. [arguments]: Adjust tests. Change-Id: I9d3b45d14ae052f3a5a5dec3587bc01d13e4b71f
2024-05-05gnu: Add python-dask-expr.Ricardo Wurmus
* gnu/packages/python-science.scm (python-dask-expr): New variable. Change-Id: I691593ab713fe865c771aa68b5521c4c10cc58f6
2024-05-05gnu: python-pandas-stub: Update to 2.1.1.230928.Ricardo Wurmus
This is a follow-up to commit ff2d0ecfca87450c82df8d74666261b1c19cbe66. * gnu/packages/python-science.scm (python-pandas-stub): Update to 2.1.1.230928. Change-Id: I2e8ce18bd25399b467a6ff2a6fb846f8bb969e4c
2024-05-05gnu: python-pandas-2: Fix version.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Write version string to "_version.py", not "_version_meson.py" to avoid reporting the version as "0+unknown". Change-Id: I1a18814e37c023102714326bc8bd505705234205
2024-05-05gnu: python-pyjanitor: Update to 0.27.0.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pyjanitor): Update to 0.27.0. [arguments]: Disable a few more tests; add phase 'pandas-compat. Change-Id: Ia8891971a687342166f30ded11f9e341a208d95e
2024-05-05gnu: python-xarray: Disable tests that are known to fail.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray)[arguments]: Disable two tests. Change-Id: I70954173e0aca5a377cf19476e9390a97febadc7
2024-05-05gnu: python-pandas: Default to version 2.x.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas): Define as alias for python-pandas-2; rename existing definition to... (python-pandas-1): ...this new variable. Change-Id: If359e3b2d42c683d7d0152b1757bbc5a979c999b
2024-05-05gnu: python-scikit-opt: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-scikit-opt)[propagated-inputs]: Add python-pytorch. Change-Id: I037cc43bedeaebb05bf038c0bca72919f8c27c40
2024-05-05gnu: Add python-cvxpy.Marco Baggio
* gnu/packages/python-science.scm (python-cvxpy): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I440ab3768cbc4e78364dc31cf9484effd9670f49
2024-05-05gnu: Add python-ecos.Marco Baggio
* gnu/packages/python-science.scm (python-ecos): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I83d9b746f5f3563f417efc5d18911f2eb04f201c
2024-05-05gnu: Add python-osqp.Marco Baggio
* gnu/packages/python-science.scm (python-osqp): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: Id6f1665505469fd6543046636b82d0730b319df3
2024-05-05gnu: Add python-qdldl.Marco Baggio
* gnu/packages/python-science.scm (python-qdldl): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I523ecb2292c9b514b548e2130d0d43bb77317b00
2024-05-05gnu: Add python-scs.Marco Baggio
* gnu/packages/python-science.scm (python-scs): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I6c5ecdac4b558aab4b8ee396dff1dfc9cdec07f0
2024-05-05gnu: Add python-fastcluster.Marco Baggio
* gnu/packages/python-science.scm (python-fastcluster): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: Ifc5229a4d00f581eb358a1f41fc3479fd1c33c2e
2024-05-05gnu: Add python-clarabel.Ricardo Wurmus
* gnu/packages/python-science.scm (python-clarabel): New variable. Change-Id: I28459162460ca9bf9e9557122f611c677afadc27
2024-05-05gnu: Add python-xarray-schema.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray-schema): New variable. Change-Id: I4ca650f2c2872698fc22392add169f44b9e2e035
2024-05-05gnu: python-xarray-datatree: Add missing input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray-datatree)[native-inputs]: Add python-setuptools-scm. Change-Id: I86a7280ba687385edb15f30dae1a20e3811a0beb
2024-04-30gnu: Add python-supersmoother.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-supersmoother): New variable. Change-Id: I8fb43d746757014e3b773c07458b777b893adb4a
2024-04-22gnu: python-xarray-dataclasses: Add missing test input.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray-dataclasses)[native-inputs]: Add python-pytest. Change-Id: I137d49380d772f11f75837aa9a915ced85cfc1a2
2024-04-22gnu: python-pandas-2: Skip expensive tests.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Set PANDAS_CI variable. Change-Id: I7c400ff260b3c833be1a55a30de021a81a5cbacb
2024-04-22gnu: Add python-pandas-2.Nicolas Graves
* gnu/packages/python-science.scm (python-pandas-2): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Change-Id: I7f0510f9021d4eac3c981e5e58f73dc3ec7efd2f
2024-04-22gnu: Add python-xarray-datatree.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray-datatree): New variable. Change-Id: I403f241b6daae8b5c835f4517a1dceca0393f8e6
2024-04-22gnu: Add python-xarray-dataclasses.Ricardo Wurmus
* gnu/packages/python-science.scm (python-xarray-dataclasses): New variable. Change-Id: I55f258e36ea70a2efb142bd652a81d70771a457c
2024-03-31gnu: Add python-pods.Maxim Cournoyer
* gnu/packages/python-science.scm (python-pods): New variable. Change-Id: I9044baaa750ee9cb7411e41dcee1df17b57741db
2024-03-29gnu: python-distributed: Disable parallel tests.Sharlatan Hellseher
As seen in <https://ci.guix.gnu.org/build/3708961/log/raw>, parallel tests introduced package build regression. * gnu/packages/python-science.scm (python-distributed) [arguments] <#:test-flags>: Disable parallel tests. [native-inputs]: Remove python-pytest-xdist. Change-Id: I3a04098604fa03ab91ceb228dd70c34c3d84db78
2024-03-29gnu: python-distributed: Speed up tests.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-distributed) [arguments] <#:test-flags>: Add option to run tests in parallel. Disable 3 more flaky tests. [native-inputs]: Add python-pytest-xdist. Sort alphabetically. Change-Id: I588c1a1dc82e3208cc1eeeefbdc58fb080775ac0
2024-03-28gnu: python-upsetplot: Update to 0.9.0.nafkhamdc
* gnu/packages/python-science.scm (python-upsetplot): Update to 0.9.0. [source]: Remove obsolete snippet. [arguments]: Remove custom check phase. [build-system]: Use pyproject-build-system. Change-Id: I68bcd6840577a12594e491e9fd5e114f9261f6c7 Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2024-02-10gnu: Add python-scikit-opt.TimotheeMathieu
* gnu/packages/python-science.scm (python-scikit-opt): New variable. Change-Id: I47d6b35d9658a37a242b4db61d293fa7efd33802 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-02-06gnu: python-traittypes: Simplify package.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-traittypes) [build-system]: Swap to pyproject-build-system. [arguments]: Move excluded tests to <#:test-flags>. Use standard 'check phase. Change-Id: I4cab0c94036a7e5f0851edf2833dfac2f675d2a0
2024-02-06gnu: python-pynrrd: Update to 1.0.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pynrrd): Update to 1.0.0. [arguments]: Keep 'ensure-no-mtimes-pre-1980 phase as it's building with it successfully. [propagated-inputs]: Add python-nptyping and python-typing-extensions. Change-Id: Ic4dcd0825e71d3eb4acd39694bee9e22e8485f9f
2024-02-06gnu: python-pynrrd: Improve description.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pynrrd) [description]: Add definition of NRRD. Change-Id: I0335df0eb4be600d81799da64374ddfb49b06720
2024-02-06gnu: Add python-pynrrd.Antero Mejr
* gnu/packages/python-science.scm (python-pynrrd): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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