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2024-09-03gnu: jacal: Update to 1c8.Artyom V. Poptsov
* gnu/packages/maths.scm (jacal): Update to 1c8. [native-inputs]: Add time. Change-Id: I855993e5caf67854c4c508546485872f770afdd6 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-09-02gnu: python-libensemble: Update to 1.4.2.Vinicius Monego
* gnu/packages/maths.scm (python-libensemble): Update to 1.4.2. [propagated-inputs]: Add python-mpmath. [arguments]: Delete a file that contains a failing test. Change-Id: I76deae624b7f2bede63ad1b2bcf445c5aae53953
2024-08-31gnu: gsl: Use gexps.Ludovic Courtès
* gnu/packages/maths.scm (gsl)[arguments]: Use gexps. Change-Id: Ic81576c61a237ff41d6ed767dcf58e38ca96e9ca
2024-08-31gnu: gsl: Fix test failures on i686-linux by building with -O2.Ludovic Courtès
* gnu/packages/maths.scm (gsl)[arguments]: Pass #:make-flags '() on i686-linux. Remove modification of ‘linalg/test.c’ in ‘disable-failing-tests’ phase for i686-linux. Change-Id: I615d4e0d71253ca294bc5c5c7a278e3046c186cc
2024-08-31gnu: gsl-static: Remove variable.Efraim Flashner
* gnu/packages/maths.scm (gsl-static): Remove variable. Change-Id: I20af472e62582b403afa4be80b2d3f725903dabc
2024-08-31gnu: gsl: Provide static library in separate output.Efraim Flashner
* gnu/packages/maths.scm (gsl)[outputs]: New field. [arguments]: Remove configure-flag disabling static library. Add make-flag to produce PIC output. Add a phase to move the static libraries into the static output. Change-Id: I4c5dddb8d384f4e2f82122b239da44350bacf57a
2024-08-31gnu: maths: Add 'bash' input for 'wrap-program'.Maxime Devos
It is required for cross-compilation. * gnu/packages/maths.scm (units): Fix indentation, remove trailing #t. [inputs]: Add bash-minimal and drop labels. (feedgnuplot)[inputs]: Add bash-minimal. (vuesz)[inputs]: Likewise. (lingeling)[inputs]: Likewise. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Change-Id: Ifc89d72147d4dbb268410c236a3a2137cd0712a0
2024-08-31gnu: lingeling: Import the correct set of modules.Maxim Cournoyer
* gnu/packages/maths.scm (lingeling) [arguments] <modules>: Replace %default-gnu-imported-modules with %default-gnu-modules. Change-Id: I9293cf6798395d9c9cf3fde5adac5439d02884df
2024-08-31gnu: hypre: Import the correct set of modules.Maxim Cournoyer
* gnu/packages/maths.scm (hypre) [arguments] <modules>: Replace %default-gnu-imported-modules with %default-gnu-modules. Change-Id: Iad7958af53360f83e7b04c5b6f8e2ccc8e87e27c
2024-08-31gnu: mumps: Import the correct set of modules.Maxim Cournoyer
* gnu/packages/maths.scm (mumps) [arguments] <modules>: Replace %default-gnu-imported-modules with %default-gnu-modules. Change-Id: I61e06ba8df29a833124940a1a4e55cb063c66e4b
2024-08-31build-systems: gnu: Export %default-gnu-imported-modules and ↵Maxim Cournoyer
%default-gnu-modules. Until now users would have to cargo cult or inspect the private %default-modules variable of (guix build-systems gnu) to discover which modules to include when extending the used modules via the #:modules argument. The renaming was automated via the command: $ git grep -l %gnu-build-system-modules | xargs sed 's/%gnu-build-system-modules/%default-gnu-imported-modules/' -i * guix/build-system/gnu.scm (%gnu-build-system-modules): Rename to... (%default-gnu-imported-modules): ... this. (%default-modules): Rename to... (%default-gnu-modules): ... this. Export. (dist-package, gnu-build, gnu-cross-build): Adjust accordingly. Change-Id: Idef307fff13cb76f3182d782b26e1cd3a5c757ee
2024-08-26gnu: nauty: Fix build.Nicolas Goaziou
* gnu/packages/maths.scm (nauty): Fix hash. Change-Id: I4837baf2c43279705f0445fd08ad2578e431b8cc
2024-08-26gnu: nauty: Update to 2.8.9.Nicolas Goaziou
* gnu/packages/maths.scm (nauty): Update to 2.8.9. [arguments]<#:phases>: Add a phase for fixing a test. Change-Id: I854754ab372ef6ae1d5e13e14c0fc8a667177b4d
2024-08-19gnu: hdf5-parallel-openmpi: Update to 1.14.x.Luca Cirrottola
Fixes <https://issues.guix.gnu.org/68313>. HDF5 1.14.3 contains the fix for <https://github.com/HDFGroup/hdf5/pull/3421>. * gnu/packages/maths.scm (hdf5-parallel-openmpi): Inherit from HDF5-1.14. [arguments]: Take arguments from HDF5-1.14. Use gexps. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: I99222a1085dcd75c3c9ac83a0e88495e86a8cf59
2024-08-19gnu: hdf5@1.14: Update to 1.14.3.Luca Cirrottola
* gnu/packages/maths.scm (hdf5-1.14): Update to 1.14.3. [arguments]: New field. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr> Change-Id: If413ec4d00de0de86020d8f56f2e3f9ec52ed0a9
2024-08-01gnu: mcrl2: Update to 202307.1.Janneke Nieuwenhuizen
* gnu/packages/maths.scm (mcrl2): Update to 202307.1. Change-Id: I6fe73c964336654a2f29df398c7f710db73f2637
2024-07-26gnu: petsc: Build reproducibly.Lars Bilke
* gnu/packages/maths.scm (petsc)[arguments]: In ‘configure’ phase, add ‘sorted’ call in ‘gmakegen.py’. In ‘clean-local-references’, remove substitution of “Libraries compiled on”, which is unnecessary since PETSc 3.9 (<https://gitlab.com/petsc/petsc/-/commit/a970bd748978a4e12790be7c36b10e832ec0149f>). Add substitution for “Machine characteristics” bit. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Change-Id: Ibb846c1ae368af94b46d5ce789b1263e0bc78a13
2024-07-21gnu: gnuplot: Update to 6.0.1Karl Hallsby
* gnu/packages/maths.scm (gnuplot): Update to 6.0.1. Change-Id: Ifd03a68eec47375f5af6bacfca616ff02bd23d7b Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-07-10gnu: xaos: Update to 4.3.2.Artyom V. Poptsov
* gnu/packages/maths.scm (xaos): Update to 4.3.2. [native-inputs]: Remove qtbase-5 and qttools-5; add qtbase and qttools. [arguments]: Use gexps. Fix "PREFIX" variable in "XaoS.pro" during "configure" phase. Change-Id: Ifae9890309368ee4131b531c9ea7b155a3cf693c Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-07-09gnu: petsc: Build optimized libraries.Lars Bilke
* gnu/packages/maths.scm (petsc)[arguments]: Disable debug information. Change-Id: Iec92a5bf50a004880aeb1ec49d2a2beb154ef222 Signed-off-by: Andreas Enge <andreas@enge.fr>
2024-07-06gnu: primesieve: Update to 12.3.Vinicius Monego
* gnu/packages/maths.scm (primesieve): Update to 12.3. Change-Id: Ie98e370f2467fd9e9c24e6bfb99b809011ee104a
2024-07-06gnu: cminpack: Update to 1.3.9.Vinicius Monego
* gnu/packages/maths.scm (cminpack): Update to 1.3.9. Change-Id: I2b4039c4e8c313204f96773b1d0dd072dfca5d41
2024-06-30gnu: openblas-ilp64: Enable building on all 64bit platforms.Efraim Flashner
* gnu/packages/maths.scm (openblas-ilp64)[supported-systems]: Mark all 64bit platforms as supported. Change-Id: I3956b0140798842bae23fc5f855f0953ec81b53d
2024-06-24gnu: frama-c: Add wrap-programs phase.Jean-Pierre De Jesus DIAZ
Frama-C needs the OCAMLPATH variable to be defined to load libraries, so define it using the OCAMLPATH variable generated during build time. Related issues: - <https://issues.guix.gnu.org/54094> (fixes it). - <https://issues.guix.gnu.org/69996> (only Frama-C fixed from this one). * gnu/packages/maths.scm (frama-c) <arguments>: Add wrap-programs phase. Change-Id: Icc8a0be5fed6678b71649da2e39a83caaaee9df2 Signed-off-by: jgart <jgart@dismail.de>
2024-06-24gnu: frama-c: Use G-Expressions.Jean-Pierre De Jesus DIAZ
* gnu/packages/maths.scm (frama-c) <arguments>: Use G-Expressions. Change-Id: I25670a3d7e735e001aba63628c2f046be07fc643 Signed-off-by: jgart <jgart@dismail.de>
2024-06-24gnu: frama-c: Update to 29.0.Jean-Pierre De Jesus DIAZ
* gnu/packages/maths.scm (frama-c): Update to 29.0. Change-Id: Ifca4712bc1d75b0c8837ac04151fa9a83ae95bbe Signed-off-by: jgart <jgart@dismail.de>
2024-06-24gnu: octave: Update to 9.2.0.Andy Tai
* gnu/packages/maths.scm (octave-cli): Update to 9.2.0. Change-Id: Ib00c0eb687a469ecca20d570f39b69d8027c0cb0 Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-06-10gnu: bitwise: Update to 0.50.Artyom V. Poptsov
* gnu/packages/maths.scm (bitwise): Update to 0.50. Change-Id: I34958302d3385d5dbe80715bf7d955af7a4aadbd Signed-off-by: jgart <jgart@dismail.de>
2024-06-02gnu: minizinc: Update to 2.8.4.Herman Rimm
* gnu/packages/maths.scm (minizinc): Update to 2.8.4. Change-Id: I503fd004b38abaac8829a2cb94c182b001d83763 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-06-02gnu: chuffed: Update to 0.13.2.Herman Rimm
* gnu/packages/maths.scm (chuffed): Update to 0.13.2. Change-Id: I77fc1ceb9caa42833689fba771010aeb38443e5e Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-06-02gnu: gecode: Update to 6.2.0-1.f7f0d7c.Herman Rimm
* gnu/packages/maths.scm (gecode): Update to 6.2.0-1.f7f0d7c. [version]: Use version. [arguments]: Add patch-msc-and-version phase. Install examples to the examples output again. (minizinc)[arguments]: Copy provided gecode.msc file instead. Change-Id: I5e89105f3fef61d6aa677a4a118225679220ce5d Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-15Revert "gnu: chuffed: Update to 0.13.2."Andreas Enge
This reverts commit bc6742e168f4af9d6479e00f482998b03653787a. This makes it possible to apply the v3 patch series of issue #70087 and to properly credit its author.
2024-05-15gnu: chuffed: Update to 0.13.2.Andreas Enge
* gnu/packages/maths.scm (chuffed): Update to 0.13.2. [source]<origin>: Add file-name field. Change-Id: I466ba358e556ddab3134219493819ce521b59321
2024-05-15gnu: why3: Enable extra features.Jean-Pierre De Jesus DIAZ
* gnu/packages/maths.scm (why3) <propagated-inputs>: Add ocaml-ppx-deriving, ocaml-ppx-sexp-conv, ocaml-re and ocaml-sexplib to enable extra features. Change-Id: Ia3b66ac08cc25097967c6e18f2193601fb748cac Signed-off-by: Andreas Enge <andreas@enge.fr>
2024-05-15gnu: why3: Use new style.Jean-Pierre De Jesus DIAZ
* gnu/packages/maths.scm (why3): Use new style and move arguments above input fields. Change-Id: Ia9cb04cafe426d7f20c5efb10ca540572dbd3be9 Signed-off-by: Andreas Enge <andreas@enge.fr>
2024-05-15gnu: why3: Update to 1.7.2.Jean-Pierre De Jesus DIAZ
* gnu/packages/maths.scm (why3): Update to 1.7.2. Change-Id: Ie5a40b31c2c418fafbdbba52e875ac25a26fb12b Signed-off-by: Andreas Enge <andreas@enge.fr>
2024-05-15gnu: frama-c: Update to 28.1.Jean-Pierre De Jesus DIAZ
* gnu/packages/maths.scm (frama-c): Update to 28.1. Change-Id: I0ce0d0a7db4d017ba1f5028e73c931ceb706fce5 Signed-off-by: Andreas Enge <andreas@enge.fr>
2024-05-15gnu: minizinc: Use gexps.Andreas Enge
* gnu/packages/maths.scm (minizinc): Use gexps. Change-Id: I60a0d56b6d6ba33d96ca13b58355b5c213b0f6d2
2024-05-15gnu: minizinc: Add chuffed backend.Herman Rimm
* gnu/packages/maths.scm (minizinc): Add backend. Change-Id: If178a7585d70eb4b6f3223f5f6b2f34d9d2f2257 Signed-off-by: Andreas Enge <andreas@enge.fr>
2024-05-15gnu: gecode: Downgrade to 6.2.0-2.2d20e88.Andreas Enge
This is a commit with which the dependent package minizinc builds successfully. * gnu/packages/maths.scm (gecode): Downgrade to 6.2.0-2.2d20e88. Change-Id: I0bdb0131374639b1664e6ec40374d51b6922094c
2024-05-15gnu: gecode: Use gexps.Andreas Enge
* gnu/packages/maths.scm (gecode): Use gexps. Reindent package. Change-Id: I5a644d25f2d62c3245b0770fe99c20c3ef380ffc
2024-05-15gnu: gecode: Update to 6.2.0-1.f7f0d7c.Andreas Enge
* gnu/packages/maths.scm (gecode): Update to 6.2.0-1.f7f0d7c. Change-Id: I48b77da2957a08850215aa02a77a845052bf26f7
2024-05-15gnu: Add chuffed.Herman Rimm
* gnu/packages/maths.scm (chuffed): Add variable. Co-authored-by: Andreas Enge <andreas@enge.fr> Change-Id: I77fc1ceb9caa42833689fba771010aeb38443e5e
2024-05-11gnu: Add python-libensemble.Vinicius Monego
* gnu/packages/maths.scm (python-libensemble): New variable. Change-Id: I45d4ba209af746f22f3f6c74a01063726478de0f
2024-05-06gnu: wxmaxima: Update to 24.02.2.Andy Tai
* gnu/packages/maths.scm (wxmaxima): Update to 24.02.2. Change-Id: I33cd6a3230a7d1672aadf942ad0b089dfa8603b0 Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-01gnu: scilab: Improve package management robustness in scilab-cli.Nicolas Graves
* gnu/packages/maths.scm (scilab)[source]<origin>: Improve package management robustness in scilab-cli by allowing tbx_build_help to log the scilab mode incompatibility error and not process the rest of the function instead of failing with it. * gnu/packages/patches/scilab-tbx_build_help.patch : Add patch. * gnu/local.mk(dist_patch_DATA): Add gnu/packages/patches/scilab-tbx_build_help.patch. Change-Id: I8ee94afb4aba906cbc8c7ca67f4c89aa0cf55ae6 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-01gnu: scilab: Fixup and improve compilerDetection.sh script.Nicolas Graves
* gnu/packages/maths.scm (scilab) [arguments]<#:phases>: Fix compilerDetection.sh script in phase bootstrap-dynamic_link-scripts. [source]<origin>(patches): Add scilab-better-compiler-detection.patch. * gnu/packages/patches/scilab-better-compiler-detection.patch: Add file. * gnu/local.mk(dist_path_DATA): Add scilab-better-compiler-detection.patch. Change-Id: I7b1c78c4637fa1bc965eca8c516bf0b6cd4b92d1 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-05-01gnu: scilab: Cleanup.Nicolas Graves
* gnu/packages/maths.scm (scilab): [arguments]<#:phases>: In pre-build phase, remove unecessary code, due to the former introduction of the rewrap-scilab-cli phase. More robust version setting in the set-version phase. It anticipates for the next release which will not use "main" anymore. [source]<origin>(snippet) Sort dynamic_link deleted files. [inputs]: Add bash-minimal. Change-Id: I49b17886405e1ed8161e71b51655fa393ff7f10b Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-18gnu: armadillo: Enable LAPACK support.Guillaume Le Vaillant
* gnu/packages/maths.scm (armadillo)[arguments]: Add OPENBLAS_PROVIDES_LAPACK option to 'configure-flags'. Change-Id: I872520620c921d0ab1fef8f6e5812da12cee031b
2024-04-11gnu: superlu-dist: Fix linking with the ParMETIS shim of pt-scotch.Ludovic Courtès
* gnu/packages/maths.scm (superlu-dist)[arguments]: Adjust library names to match current ‘scotch’. Change-Id: If64094c058cc3be58435fe1c47cc99fb0a9e1fff
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