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2023-10-25gnu: gnuplot: Update to 5.4.9....* gnu/packages/maths.scm (gnuplot): Update to 5.4.9. [arguments]<#:configure-flags>: Add --with-qt=no. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Paul A. Patience
2023-10-24gnu: nauty: Update to 2.8.6....* gnu/packages/maths.scm (nauty): Update to 2.8.6. [arguments]<#:phases>: Remove unnecessary phases. Add a phase to fix location of installed ".pc" files. Change-Id: I65db0b2dde6e7a9dda396598d744e21ce7c78200 Nicolas Goaziou
2023-10-21gnu: trilinos-for-dealii-openmpi: Fix build....This fixes the error error: ‘std::hypot’ has not been declared caused by using an older version of gcc, but requires some patches to placate newer versions of gcc. * gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[origin]: Add patches. [native-inputs]: Remove gcc-7. * gnu/packages/patches/teuchos-remove-duplicate-using.patch: New file. * gnu/packages/patches/tpetra-remove-duplicate-using.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2023-10-21gnu: Propagate suitesparse-* inputs referenced in header files....* gnu/packages/maths.scm (suitesparse-amd, suitesparse-btf, suitesparse-camd, suitesparse-colamd, suitesparse-ccolamd, gklib-suitesparse, suitesparse-cholmod, suitesparse-cxsparse, suitesparse-klu, suitesparse-ldl, suitesparse-rbio, suitesparse-mongoose, suitesparse-spex, suitesparse-spqr, suitesparse-umfpack)[inputs]: Move relevant suitesparse-* packages ... [propagated-inputs]: ... to here. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-17gnu: nomad-optimizer: Update to 4.3.1....* gnu/packages/maths.scm (nomad-optimizer): Update to 4.3.1. [native-inputs]: Remove python-wrapper and python-cython. Add openmpi. [arguments]: Use G-expressions. Remove #:imported-modules and #:modules. <#:configure-flags>: Remove -DBUILD_INTERFACE_PYTHON=ON. <#:phases>: Remove 'fix-sources-for-build' phase. Rename 'fix-sources-for-tests' phase to 'fix-tests' and update it. Add 'mpi-setup' phase. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-10-15gnu: Add fast-downward....* gnu/packages/maths.scm (fast-downward): New variable. Liliana Marie Prikler
2023-10-14gnu: dealii: Update to 9.5.1....* gnu/packages/maths.scm (dealii): Update to 9.5.1. [propagated-inputs]: Add kokkos. [arguments]<#:phases>: Add 'unset-cpath' phase. (dealii-openmpi)[propagated-inputs]: Remove kokkos. [arguments]<#:phases>: Delete 'unset-cpath' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2023-10-11gnu: Add bliss....* gnu/packages/maths.scm (bliss): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add linasm....* gnu/packages/maths.scm (linasm): New variable. Ricardo Wurmus
2023-10-06gnu: Add suitesparse-umfpack....* gnu/packages/maths.scm (suitesparse-umfpack): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-spqr....* gnu/packages/maths.scm (suitesparse-spqr): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-spex....* gnu/packages/maths.scm (suitesparse-spex): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-mongoose....* gnu/packages/maths.scm (suitesparse-mongoose): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-rbio....* gnu/packages/maths.scm (suitesparse-rbio): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-ldl....* gnu/packages/maths.scm (suitesparse-ldl): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-klu....* gnu/packages/maths.scm (suitesparse-klu): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-cxsparse....* gnu/packages/maths.scm (suitesparse-cxsparse): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-cholmod....* gnu/packages/maths.scm (suitesparse-cholmod): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add metis-suitesparse....* gnu/packages/maths.scm (metis-suitesparse): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add gklib-suitesparse....* gnu/packages/maths.scm (gklib-suitesparse): New variable. * gnu/packages/patches/gklib-suitesparse.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add metis-5.2....* gnu/packages/maths.scm (metis-5.2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add gklib....* gnu/packages/maths.scm (gklib): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-ccolamd....* gnu/packages/maths.scm (suitesparse-ccolamd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-colamd....* gnu/packages/maths.scm (suitesparse-colamd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-camd....* gnu/packages/maths.scm (suitesparse-camd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-btf....* gnu/packages/maths.scm (suitesparse-btf): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-amd....* gnu/packages/maths.scm (suitesparse-amd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: Add suitesparse-config....The suitesparse-source variable contains the entire SuiteSparse source code, which is used for all subpackages. * gnu/packages/maths.scm (suitesparse-version, suitesparse-source, suitesparse-config): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-06gnu: suitesparse: Tweak description....* gnu/packages/maths.scm (suitesparse)[description]: Mention that all subpackages are included. Signed-off-by: Ludovic Courtès <ludo@gnu.org> David Elsing
2023-10-04gnu: Remove suitesparse-3....* gnu/packages/maths.scm (suitesparse-3): Delete variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> David Elsing
2023-10-04gnu: scilab: Update to 2023.1.0....* gnu/packages/maths.scm (scilab): Update to 2023.1.0. [source] Use git-fetch. <modules>: Add (guix build utils) and (ice-9 ftw). <patches>: Add patch for hdf5 >= 1.10. <snippet>: Move contents of the "scilab" directory to its parents. Remove the other files and autogenerated files. [native-inputs]: Add autoconf, autoconf-archive, automake, bison, eigen, flex, libtool, ocaml and ocaml-findlib. [inputs]: Add ocaml-num, replace hdf5-1.8 by hdf5-1.14 and suitesparse-3 by suitesparse. [arguments]: Remove quasiquote. Add --enable-build-parser, --with-eigen-include=..., OCAMLC=... and OCAMLOPT=... to #:configure-flags. <#:phases>: Add fix-ocaml-num, remove-desktop-files, bootstrap-dynamic_link-scripts and build-parsers phases. Remove fixes for compilation and linker errors from the pre-build phase. [home-page]: Update URL. [description]: Add two spaces between sentences. [license]: Update to gpl2 and bsd-3. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> David Elsing
2023-09-30gnu: ceres: Propagate eigen and gflags....* gnu/packages/maths.scm (ceres)[inputs]: Move eigen and gflags to ... [propagated-inputs]: ... here. Vinicius Monego
2023-09-30gnu: Add pagmo....* gnu/packages/maths.scm (pagmo): New variable. Vinicius Monego
2023-09-30gnu: Add bonmin....* gnu/packages/maths.scm (bonmin): New variable. Vinicius Monego
2023-09-30gnu: Add cminpack....* gnu/packages/maths.scm (cminpack): New variable. Vinicius Monego
2023-09-30gnu: Add primesieve....* gnu/packages/maths.scm (primesieve): New variable. Vinicius Monego
2023-09-30gnu: Add hmat....* gnu/packages/maths.scm (hmat): New variable. Vinicius Monego
2023-09-30gnu: hdf-eos5: Update to 2.0....* gnu/packages/maths.scm (hdf-eos5): Update to 2.0. [source]: Change URL and add snippet to remove generated files. [native-inputs]: Add autoconf, automake and libtool. [inputs]: Replace hdf5-1.8 with hdf5-1.14. [arguments]: Do not use quasiquote and add the phases remove-single-module-flag and fix-parallel-tests. Signed-off-by: Christopher Baines <mail@cbaines.net> David Elsing
2023-09-28gnu: openblas-ilp64: Add symbol suffix....* gnu/packages/maths.scm (openblas-ilp64)[arguments]<#:make-flags>: Add the symbol '64_' as suffix. Efraim Flashner
2023-09-23Merge branch 'lisp-team'Guillaume Le Vaillant
2023-09-04gnu: maxima: Update to 5.47.0....* gnu/packages/maths.scm (maxima): Update to 5.47.0. [inputs]: Remove labels. [arguments]: Use gexps. Remove trailing booleans. Guillaume Le Vaillant
2023-08-31gnu: matio: Update to 1.5.23....* gnu/packages/maths.scm (matio): Update to 1.5.23. Andreas Enge
2023-08-31gnu: matio: Use standard hd5 as input....* gnu/packages/maths.scm (matio)[inputs]: Replace hdf5-1.8 by hdf5, which is version 1.10. Andreas Enge
2023-09-13gnu: octave-cli: Update to 8.3.0...* gnu/packages/maths.scm (octave-cli): Update to 8.3.0 Signed-off-by: Eric Bavier <bavier@posteo.net> Andy Tai
2023-09-13gnu: hdf4, hdf4-alt: Update to 4.2.16-2....* gnu/packages/maths.scm (hdf4)[source]: Update to 4.2.16-2. Drop patches that do not apply any more. [arguments]: Drop configure flag related to libtirpc. Add configure flag to build xdr library and drop unneeded substitutions. * gnu/packages/patches/hdf4-architectures.patch, gnu/packages/patches/hdf4-tirpc.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Unregister patches. Andreas Enge
2023-09-08gnu: Add ruy....* gnu/packages/maths.scm (ruy): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Andy Tai
2023-08-21gnu: hdf5: Remove 1.12.2....* gnu/packages/maths.scm (hdf5-1.12): Remove variable. Andreas Enge
2023-08-18gnu: scilab: Update to 5.5.2....* gnu/packages/maths.scm (scilab): Update to 5.5.2. Andreas Enge
2023-08-18gnu: scilab: Fix compilation error....Signed-off-by: Andreas Enge <andreas@enge.fr> Nicolas Graves
2023-08-17gnu: libflame: Update to 70c19e7....* gnu/packages/maths.scm (libflame): Update to 70c19e7. [arguments]: Add #:make-flags. Ludovic Courtès