dnl GNU Guix --- Functional package management for GNU
dnl Copyright © 2012, 2013, 2014, 2015, 2016, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org>
dnl Copyright © 2014 Mark H Weaver <mhw@netris.org>
dnl Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
dnl
dnl This file is part of GNU Guix.
dnl
dnl GNU Guix is free software; you can redistribute it and/or modify it
dnl under the terms of the GNU General Public License as published by
dnl the Free Software Foundation; either version 3 of the License, or (at
dnl your option) any later version.
dnl
dnl GNU Guix is distributed in the hope that it will be useful, but
dnl WITHOUT ANY WARRANTY; without even the implied warranty of
dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
dnl GNU General Public License for more details.
dnl
dnl You should have received a copy of the GNU General Public License
dnl along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

dnl GUIX_SYSTEM_TYPE
dnl
dnl Determine the Guix host system type, and store it in the
dnl `guix_sy</td></tr></table>
<table class='tabs'><tr><td>
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<div class='path'>path: <a href='/guix/log/?id=71b611bc34ebb7b1ea86571ed88ce8ff850ccdaa'>root</a>/<a href='/guix/log/gnu?id=71b611bc34ebb7b1ea86571ed88ce8ff850ccdaa'>gnu</a>/<a href='/guix/log/gnu/packages?id=71b611bc34ebb7b1ea86571ed88ce8ff850ccdaa'>packages</a>/<a href='/guix/log/gnu/packages/bioinformatics.scm?id=71b611bc34ebb7b1ea86571ed88ce8ff850ccdaa'>bioinformatics.scm</a></div><div class='content'><table class='list nowrap'><tr class='nohover'><th class='left'>Age</th><th class='left'>Commit message (<a href='/guix/log/gnu/packages/bioinformatics.scm?id=71b611bc34ebb7b1ea86571ed88ce8ff850ccdaa&amp;showmsg=1'>Expand</a>)</th><th class='left'>Author</th></tr>
<tr><td><span title='2016-09-22 22:42:37 +0300'>2016-09-22</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=0dbb7ac2df86787cfcb7ae35915a0bfe88a500f9'>gnu: plink: Set endian-ness on more architectures.</a><span class='msg-avail'>...</span></td><td>Efraim Flashner</td></tr>
<tr><td><span title='2016-09-22 19:21:16 +0300'>2016-09-22</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=62d00095c2d20f4625189c7e5d642f66f65fd9d7'>gnu: prank: Allow building on 32-bit machines.</a><span class='msg-avail'>...</span></td><td>Efraim Flashner</td></tr>
<tr><td><span title='2016-09-22 16:36:00 +1000'>2016-09-22</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=951da521a9bb94a70eb750198bafe031e4ea8411'>gnu: diamond: Update to 0.8.22.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-09-21 22:36:52 +0300'>2016-09-21</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=6e8faf779444688d40453c041cd441782ada38aa'>gnu: jellyfish: Limit to x86_64.</a><span class='msg-avail'>...</span></td><td>Efraim Flashner</td></tr>
<tr><td><span title='2016-09-21 18:44:22 +1000'>2016-09-21</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=79558df220f14086c1ab66cfa50c779ab6c41314'>gnu: vsearch: Update to 2.1.0.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-09-19 11:56:44 +0200'>2016-09-19</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=eb24341ffb248c3c5c020be72919e13c8cdc6d18'>gnu: Add r-biocinstaller.</a><span class='msg-avail'>...</span></td><td>Roel Janssen</td></tr>
<tr><td><span title='2016-09-19 15:44:20 +1000'>2016-09-19</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=de96ea286d3d2d1f975f72a0f089ea5193db4fdb'>gnu: python-biom-format: Move inputs to propagated-inputs.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-09-19 15:44:20 +1000'>2016-09-19</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=7bba95b769e25cd9d1854029a1557d4f97c84235'>gnu: seqmagick: Use BioPython 1.66.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-09-19 15:44:20 +1000'>2016-09-19</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=4b1a15282677b15a5949ec144567529f70260203'>gnu: Add python2-biopython-1.66.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-09-19 15:44:20 +1000'>2016-09-19</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=8c8da1389e476356ce5086b5cff4874d41271b96'>gnu: python-biopython: Use 'python2-variant'.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-09-19 15:44:18 +1000'>2016-09-19</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=4ce603058865be5e1da07cc90f4090c94e71dd9f'>gnu: python-biopython: Update to 1.68.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-09-13 20:27:29 +1000'>2016-09-13</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=66daf78c0a4b64e0618a9bca8c8e6c0ce28de16d'>gnu: Add seqtk.</a><span class='msg-avail'>...</span></td><td>Ben J Woodcroft</td></tr>
<tr><td><span title='2016-09-12 14:19:37 -0400'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=2642231b39d2f642364e96222690afce7c986bb6'>gnu: bowtie: Update to 2.2.9.</a><span class='msg-avail'>...</span></td><td>Leo Famulari</td></tr>
<tr><td><span title='2016-09-12 17:44:49 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=d108c2122814188e8081dd4aeae3c22202d5e77b'>gnu: r-org-mm-eg-db: Update to 3.3.0.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-12 17:44:48 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=6ab7ca24f229cd0ea1afbeb787cd9734b3109809'>gnu: r-org-dm-eg-db: Update to 3.3.0.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-12 17:44:48 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=019be09060f1459b078e6ac11e0c36c33f2e1991'>gnu: r-org-ce-eg-db: Update to 3.3.0.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-12 17:44:48 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=5cc7cff6ef5693e2bebe9e4fda4dcba87e13cd32'>gnu: r-org-hs-eg-db: Update to 3.3.0.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-12 17:44:48 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=401528b2b5984c847676db8d94e046b98a4acf37'>gnu: r-go-db: Update to 3.3.0.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-12 17:44:42 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=44f711dbe6da760ff9efb5ebe23ef32d1a1ba17a'>gnu: r-biocparallel: Update to 1.6.6.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-12 17:44:42 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=10e479a7c0e59f81548883525c45c44ab1704580'>gnu: r-genomicranges: Update to 1.24.3.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-12 17:44:42 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=01ebbb1b76a0a7c2e34cbc13484cad3103cf06e3'>gnu: r-limma: Update to 3.28.21.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-12 17:44:42 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=bbf53cb527227b66ecc8d147660ea4d27165e662'>gnu: r-variantannotation: Update to 1.18.7.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-12 17:44:41 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=4fa7091d549d9f8bde23b155f8056d8ebcddf62e'>gnu: r-genomeinfodb: Update to 1.8.7.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-12 17:44:41 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=3b851cd4ac8806b62073f1bff93adc76edb3a99b'>gnu: r-seqinr: Update to 3.3-1.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-12 17:44:41 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=2b1cc79d989d99f68a70eaf60ebcb0b8bd30532f'>gnu: r-s4vectors: Update to 0.10.3.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-12 17:44:41 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=0b54b4c9866966146923de25d6088e3934c18524'>gnu: r-acsnminer: Update to 0.16.8.25.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-12 17:44:40 +0200'>2016-09-12</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=2c575bb9a2a91275136ec5506a0a9ab9ee4cc75a'>gnu: r-vegan: Update to 2.4-1.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-09-10 17:41:38 -0400'>2016-09-10</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=84be3b9920120e7cc03095baca06d61b7f3fb741'>gnu: Add mash.</a><span class='msg-avail'>...</span></td><td>Marius Bakke</td></tr>
<tr><td><span title='2016-09-10 09:47:42 +1000'>2016-09-10</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=4b6da268ff49005c84713ea35699bdd491ee29a3'>gnu: bamm: Update to 1.7.3.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-09-04 12:43:10 +0300'>2016-09-04</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=48409ef26934cd8a2e692718b06d7853859f7e36'>gnu: infernal: Limit to i686 and x86_64 systems.</a><span class='msg-avail'>...</span></td><td>Efraim Flashner</td></tr>
<tr><td><span title='2016-09-02 16:46:37 +0200'>2016-09-02</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=35aa90a1fd4d8f29d0c88e4a73a7971cb261c68e'>gnu: Add Infernal.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-08-31 15:23:03 +0200'>2016-08-31</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=c180533bb5dc2af653deb074fe9183c4df03be4a'>gnu: subread: Update to 1.5.1.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-08-31 15:52:49 +1000'>2016-08-31</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=7d57ebaa7c4aefec69104fc10e56f04bceb6fe5b'>gnu: aragorn: Update to 1.2.37.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-08-30 10:46:30 +1000'>2016-08-30</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=caa9bc7dc5824e587a588aa698e473e217c7c468'>gnu: diamond: Update to 0.8.20.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-08-22 16:52:40 +0200'>2016-08-22</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=fe02c4c98aee859f7eb75e7ca18a78498ba7fa78'>gnu: Add r-bamsignals.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-08-22 16:52:22 +0200'>2016-08-22</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=52765a63ca43a66137272e9826553c072c1ef769'>gnu: Add r-rhtslib.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-08-17 19:35:05 +0200'>2016-08-17</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=433530a5fcfd379cd954d84588ca600ad5867653'>gnu: clipper: Update to 1.1.</a><span class='msg-avail'>...</span></td><td>Ricardo Wurmus</td></tr>
<tr><td><span title='2016-08-17 20:56:21 +1000'>2016-08-17</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=318c0aee1ec2f33e4dfb7f4daa4a67cfcbe78629'>gnu: Add minced.</a><span class='msg-avail'>...</span></td><td>Marius Bakke</td></tr>
<tr><td><span title='2016-08-16 19:49:15 +1000'>2016-08-16</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=71461f88eeb746e43f4b29955134f6eb6d123bba'>gnu: mafft: Update to 7.305.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-08-15 20:59:41 +1000'>2016-08-15</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=0ed8f0cd4ceb9e77d306fcaa71caf6c28ce22717'>gnu: mafft: Update to 7.304.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-08-15 20:51:00 +1000'>2016-08-15</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=101e8f717130339247b4d4abe63a4df379becdea'>gnu: mafft: Wrap programs.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-08-15 20:51:00 +1000'>2016-08-15</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=93b8316e08d1e1bd177c3c694733bb60886735d6'>gnu: mafft: Update to 7.300.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-08-14 14:55:23 +1000'>2016-08-14</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=a12ba6e878dac175debbc7ada6171916c60a85b7'>gnu: Add bamm.</a><span class='msg-avail'>...</span></td><td>Ben Woodcroft</td></tr>
<tr><td><span title='2016-08-11 22:44:07 +0300'>2016-08-11</span></td><td><a href='/guix/commit/gnu/packages/bioinformatics.scm?id=3e6fdd5f8ac8f308531192f1d537570d69ea038e'>gnu: snap-aligner: Limit to x86_64.</a><span class='