| Age | Commit message (Expand) | Author |
|---|
| 2024-12-03 | gnu: r-bioqc: Add missing inputs....* gnu/packages/bioconductor.scm (r-bioqc)[native-inputs]: Add r-ineq.
Change-Id: I090a0d25f87d23119e66a69ca37c16d7b384a01a
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-organism-dplyr: Add missing inputs....* gnu/packages/bioconductor.scm (r-organism-dplyr)[native-inputs]: Add
r-txdb-hsapiens-ucsc-hg38-knowngene and r-txdb-mmusculus-ucsc-mm10-ensgene.
Change-Id: I1dbf8d71f9a29d1a95e70a4b44042155af4a1222
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-genomicdatacommons: Delete bad tests....* gnu/packages/bioconductor.scm (r-genomicdatacommons)[arguments]: Add phase
'delete-bad-tests.
Change-Id: I9e09a99cc3e07d4d3a568d1058c717a74de925bc
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-txdb-mmusculus-ucsc-mm10-ensgene....* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-ensgene): New variable.
Change-Id: I5caa7d292ea0f81df5acf3f522fd3cf1ca9acb13
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-megadepth: Add missing inputs and disable tests....* gnu/packages/bioconductor.scm (r-megadepth)[propagated-inputs]: Add
megadepth.
[arguments]: Disable tests.
[inputs]: Remove empty field.
[properties]: Tell updater to keep megadepth as a propagated input.
Change-Id: Idbbc371c2d66aa7c0d7e2add13fa35a5b4f9cd77
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-alpine: Add missing inputs....* gnu/packages/bioconductor.scm (r-alpine)[native-inputs]: Add r-testthat.
Change-Id: I0dece0c9def13b5aed392b0a8404ee96e3d57ab5
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-biocdockermanager: Add missing inputs....* gnu/packages/bioconductor.scm (r-biocdockermanager)[native-inputs]: Add
r-testthat.
Change-Id: I22918f6024bcd2e31f7707ee2dcd2a98061a6136
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-motifdb: Add missing inputs....* gnu/packages/bioconductor.scm (r-motifdb)[native-inputs]: Add r-seqlogo.
Change-Id: I4a2316e35ba4b2c79f01edb1d887702102b1106c
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-dittoseq: Add missing inputs....* gnu/packages/bioconductor.scm (r-dittoseq)[native-inputs]: Add
r-complexheatmap, r-deseq2, r-edger r-ggplot-multistats, r-ggrastr, and
r-plotly.
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-complexheatmap: Add missing inputs....* gnu/packages/bioconductor.scm (r-complexheatmap)[native-inputs]: Add
r-dendextend, r-genomicranges, and r-gridtext.
Change-Id: If306ccd62519e8af3314b6aadcac3a34f08d9138
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-fishpond: Add missing inputs....* gnu/packages/bioconductor.scm (r-fishpond)[native-inputs]: Add r-data-table,
r-deseq2, and r-samr.
Change-Id: I5e3c827f274a20ff410287f39b3a57de66b77f01
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-geoquery: Disable tests....* gnu/packages/bioconductor.scm (r-geoquery)[arguments]: Disable tests.
Change-Id: Ibd30534cfb1f6bd4927f16908a749dd1881932e4
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-annotationforge: Add missing inputs....* gnu/packages/bioconductor.scm (r-annotationforge)[native-inputs]: Add
r-go-db.
Change-Id: Ie1b824fd4215e6583fd561b5d959dec52ce19eaa
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-greylistchip: Add missing inputs....* gnu/packages/bioconductor.scm (r-greylistchip)[native-inputs]: Add
r-biocstyle.
Change-Id: I65ce2be5b87171bf752da4181dbf8eea1f2d50c3
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-pcatools: Add missing inputs....* gnu/packages/bioconductor.scm (r-pcatools)[native-inputs]: Add r-scran.
Change-Id: Ie815aa731b3ef52560315bd040eca42f69f3f890
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-sva: Add missing inputs....* gnu/packages/bioconductor.scm (r-sva)[native-inputs]: Add r-biocstyle,
r-bladderbatch, r-pamr, and r-zebrafishrnaseq.
Change-Id: Ie97432eec92258c680814a45ff842c17674c3ecc
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-zebrafishrnaseq....* gnu/packages/bioconductor.scm (r-zebrafishrnaseq): New variable.
Change-Id: I5fe044acef56aba8601fea9cc766bbf69594714b
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-mlinterfaces: Add missing inputs....* gnu/packages/bioconductor.scm (r-mlinterfaces)[native-inputs]: Add
r-golubesets.
Change-Id: I509c44b49974c423ce138db74dc0275de5a6570d
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-oligodata....* gnu/packages/bioconductor.scm (r-oligodata): New variable.
Change-Id: I605b877f91c068180c55da5ecbbd62b6071fde3c
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-pd-mapping50k-hind240....* gnu/packages/bioconductor.scm (r-pd-mapping50k-hind240): New variable.
Change-Id: I11680ac9b36494565f22f83cc4cae49f8d751b13
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-oligo: Disable tests....* gnu/packages/bioconductor.scm (r-oligo)[arguments]: Disable tests.
Change-Id: Ief8655fed61142efa86cdf0170e417fde2f4c617
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-oligoclasses: Disable tests....* gnu/packages/bioconductor.scm (r-oligoclasses)[arguments]: Disable tests.
Change-Id: I0f8513449464a7fce0a353bcaf62b67bc58f31fe
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-oligoclasses: Add missing inputs....* gnu/packages/bioconductor.scm (r-oligoclasses)[native-inputs]: Add
r-genomewidesnp6crlmm and r-human370v1ccrlmm.
Change-Id: I597e4fe28ec054376a8a4bbf2f87492d1a7bdce1
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-human370v1ccrlmm....* gnu/packages/bioconductor.scm (r-human370v1ccrlmm): New variable.
Change-Id: I46b8f5aa896fb1357cfe0329bbd6e25d7fd9db9c
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-genomewidesnp6crlmm....* gnu/packages/bioconductor.scm (r-genomewidesnp6crlmm): New variable.
Change-Id: I6291cc56961076ecff1fba835e936036e7fdf35b
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-linnorm: Add missing inputs....* gnu/packages/bioconductor.scm (r-linnorm)[native-inputs]: Add r-matrixstats
and r-moments.
Change-Id: I5b1273c24d865bf90b481f426a3cc70032bdfc47
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-varianttools: Add missing inputs....* gnu/packages/bioconductor.scm (r-varianttools)[native-inputs]: Add
r-lungcancerlines.
Change-Id: I0d9d226a15d56d5ff9873ccc3b2f1b7cad31d8af
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-lungcancerlines....* gnu/packages/bioconductor.scm (r-lungcancerlines): New variable.
Change-Id: I4f688432cf3ec4361cd870ef12abef8678a5f665
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-structuralvariantannotation: Add missing inputs....* gnu/packages/bioconductor.scm (r-structuralvariantannotation)
[native-inputs]: Add r-bsgenome-hsapiens-ucsc-hg19 and r-tidyverse.
Change-Id: I2f91947e09b046f314faefc86bd2bbfdd7bf14de
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-annmap: Fix tests....* gnu/packages/bioconductor.scm (r-annmap)[arguments]: Add phase 'set-HOME.
Change-Id: I0962b8da16f121bca7b5f1b619386447875dd108
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-chipcomp: Add missing inputs....* gnu/packages/bioconductor.scm (r-chipcomp)[native-inputs]: Add r-biocstyle.
Change-Id: I7aeab9d0169480602286bce5f1374b70d2c50e75
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-mutationalpatterns: Add missing inputs....* gnu/packages/bioconductor.scm (r-mutationalpatterns)[native-inputs]: Add
r-ccfindr.
Change-Id: I294c6c4d361c70c55e58509b2ff6512c24dd3978
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-ccfindr....* gnu/packages/bioconductor.scm (r-ccfindr): New variable.
Change-Id: Icc76252494a1750888b8218df36ed002096c0268
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-abn: Add test inputs....* gnu/packages/bioconductor.scm (r-abn)[arguments]: Add phase
'delete-bad-tests.
[native-inputs]: Add r-entropy, r-moments, and r-rhpcblasctl.
Change-Id: Id981a537882ecc620232049e6831de657ec7f29a
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-kegggraph: Add test inputs....* gnu/packages/bioconductor.scm (r-kegggraph)[arguments]: Disable vignettes.
[native-inputs]: Add r-hgu133plus2-db and r-rbgl.
Change-Id: I7958c35cb0e507b209578c0a5d0a093fc9759e0c
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-snprelate: Add test inputs....* gnu/packages/bioconductor.scm (r-snprelate)[native-inputs]: Add
r-biocgenerics and r-matrix.
Change-Id: Ie0f58fc3a94622a316213bc6f50d2f1e30199f1a
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-gwastools: Disable tests....* gnu/packages/bioconductor.scm (r-gwastools)[arguments]: Disable tests.
Change-Id: Ie5a0d07995d54c5824dde99cf3854e0c69aac2e8
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-affy: Disable tests....* gnu/packages/bioconductor.scm (r-affy)[arguments]: Disable tests.
Change-Id: Iad8b990c573e417d611c3198110d6dc42deb5e2b
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-seqarray: Add test inputs....* gnu/packages/bioconductor.scm (r-seqarray)[native-inputs]: Add r-digest,
r-matrix, and r-variantannotation.
Change-Id: Iea288da4b74c575c28187353d8235700c5595c46
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-ancombc: Add missing input....* gnu/packages/bioconductor.scm (r-ancombc)[native-inputs]: Add r-microbiome.
Change-Id: I3ef087c262f71fbc5703aa798adc285c0db687af
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-phyloseq: Add missing input....* gnu/packages/bioconductor.scm (r-phyloseq)[native-inputs]: Add r-genefilter.
Change-Id: Iadc35d4721a69f37ba1370cc57e9320137c77738
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-bigpint: Disable tests....* gnu/packages/bioconductor.scm (r-bigpint)[arguments]: Disable tests.
[native-inputs]: Add r-runit.
Change-Id: I755558ce65d00451586e35b2111bfd3de3890674
| Ricardo Wurmus |
| 2024-12-03 | gnu: Add r-rtcga-rnaseq....* gnu/packages/bioconductor.scm (r-rtcga-rnaseq): New variable.
Change-Id: I6e9287fe55da3f6db678603f115d790d273dacc2
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-rtcga: Disable tests....* gnu/packages/bioconductor.scm (r-rtcga)[arguments]: Disable tests.
Change-Id: If33bac14355a89a1a75860d3f28216a0614a64b1
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-biovizbase: Add missing input....* gnu/packages/bioconductor.scm (r-biovizbase)[native-inputs]: Add
r-ensdb-hsapiens-v75.
Change-Id: I47b3e912af8af52f2168a111032662674327f86b
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-triform: Add test input....* gnu/packages/bioconductor.scm (r-triform)[native-inputs]: Add r-runit.
[arguments]: Skip building vignettes.
Change-Id: If9d7cddb5c24d9f82a653df7ca664b4d75059742
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-gdsfmt: Add missing inputs....* gnu/packages/bioconductor.scm (r-gdsfmt)[native-inputs]: Add
r-biocgenerics, r-digest, and r-matrix.
Change-Id: Ia0f08199a49f4b9c3b5ecf751fa8ec211140b12f
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-aroma-light: Add test input....* gnu/packages/bioconductor.scm (r-aroma-light)[native-inputs]: Add
r-princurve.
Change-Id: I073ba49e5b564d1b6202a25e119b3d67f103c757
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-acde: Disable tests....* gnu/packages/bioconductor.scm (r-acde)[arguments]: Disable tests.
[native-inputs]: Add r-biocgenerics.
Change-Id: I801951e942c80843bbdd6bc2eb63a31ddaf365a2
| Ricardo Wurmus |
| 2024-12-03 | gnu: r-chemmineob: Skip tests....* gnu/packages/bioconductor.scm (r-chemmineob)[arguments]: Only build
vignettes.
Change-Id: I8dae82ac4226c33a18009131b7e17662af84589b
| Ricardo Wurmus |
