aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/bioconductor.scm
AgeCommit message (Collapse)Author
2024-01-21gnu: r-cytolib: Update to 2.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.14.1. [source]: Do not unbundle included boost. [arguments]: Remove. [inputs]: Remove boost. Change-Id: Ibe26b9df3f73e67fb9f53676a2c27a5aed714895
2024-01-20gnu: r-org-hs-eg-db: Update to 3.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): Update to 3.18.0. Change-Id: Iaba83a413858a95e81b6488a2f8cde648f0bdeed
2024-01-20gnu: Add r-methylclockdata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-methylclockdata): New variable. Change-Id: Id76373a9aec8276dcfd1ec3428d2ce9c81cc51d2
2024-01-20gnu: Add r-experimenthubdata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-experimenthubdata): New variable. Change-Id: I5faf26f483898b162bc1f863a4aceb6f46c52c18
2024-01-20gnu: Add r-jaspar2016.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-jaspar2016): New variable. Change-Id: Ib2970791207b426c39bd0226e01107a35fec0bb2
2024-01-20gnu: Add r-genomicstate.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicstate): New variable. Change-Id: I1b86c8e849af7b69b5fa9ea2a0e43b4e3e1850b2
2024-01-20gnu: Add r-ensdb-hsapiens-v79.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ensdb-hsapiens-v79): New variable. Change-Id: I773615df66194ddb195f013f7000d175ac07d095
2024-01-19gnu: Add r-trnadbimport.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-trnadbimport): New variable. Change-Id: I5a232b50c08ef999f691566ccf5c0fbaf0eb21ea
2024-01-19gnu: Add r-trna.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-trna): New variable. Change-Id: Ifce902910fa75ddc471d8a25cc974307c19fd1d0
2024-01-19gnu: Add r-modstrings.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-modstrings): New variable. Change-Id: Ia61816213a7d128ab50a9ae2b2c8879e6ac00499
2024-01-19gnu: Add r-structstrings.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-structstrings): New variable. Change-Id: I9759520a03ee8178432591c48bf56fb25a379f27
2024-01-19gnu: Add r-flames.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flames): New variable. Change-Id: I551a8f9d7de16e2281898b9541572dd244aadc36
2024-01-18gnu: Add r-sictools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sictools): New variable. Change-Id: I6d6f821f054ff7fad190eb495eef7c73608d46d7
2024-01-18gnu: r-tximeta: Update to 1.20.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.2. Change-Id: I166ca1f24ecef8067f36a35a140dff345fdab7a0
2024-01-18gnu: r-basilisk: Update to 1.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.2. Change-Id: I9524ac5f52107c38b3c1172f3083836c7eabac99
2024-01-18gnu: r-scran: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.1. Change-Id: I4a2784c87fdaa09a370c4d46101dbb569bcc39ab
2024-01-18gnu: r-xcms: Update to 4.0.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.2. Change-Id: I1fe358bb287acb2810b83c383b0cd1b28e8c97b5
2024-01-18gnu: r-genomicalignments: Update to 1.38.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.2. Change-Id: Ia521daa60db1fab67d77be2fddf356e6e4950efd
2024-01-18gnu: r-edger: Update to 4.0.9.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.9. Change-Id: I253e9e2a5675b13e7947601a8726bea8aad63792
2024-01-18gnu: r-dss: Update to 2.50.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dss): Update to 2.50.1. Change-Id: Ief667e0b83ae2220900d021ebe93d27c4747c91d
2024-01-18gnu: r-densvis: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.12.1. Change-Id: I52383b9b530fdf0fe262752d639c9f2834e70fd0
2024-01-18gnu: r-animalcules: Update to 1.18.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.18.2. [propagated-inputs]: Remove r-biomformat, r-glmnet, and r-plotroc; add r-rocit. Change-Id: Idd769a9608154b66871a38701a49e84f008f849c
2024-01-11gnu: r-cytolib: Unbundle boost.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cytolib)[source]: Remove bundled copy of boost. [arguments]: Change build system to link with existing boost library. [inputs]: Add boost, openblas, protobuf, and zlib. Change-Id: I3d1b7d10c80ddaf8ed8eedfe9178ab212ef48e8d
2024-01-11gnu: r-singler: Update to 2.4.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-singler): Update to 2.4.1. Change-Id: I9b914f8194cf3317a3102c03a2cb1970f0583d9e
2024-01-11gnu: r-biocneighbors: Update to 1.20.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.2. Change-Id: I1b2ee238581afe644ea3916b0bdcc360dae63f9f
2024-01-11gnu: r-inspect: Update to 1.32.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.32.1. [propagated-inputs]: Remove r-gdata; add r-readxl. Change-Id: I80ebb3d77076cd5b0cb04d83140098251d608afd
2024-01-11gnu: r-genomicalignments: Update to 1.38.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.1. Change-Id: I5309ec8dd3b464ba54bc94a7d0a5115cc38ecf40
2024-01-11gnu: r-edger: Update to 4.0.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.6. Change-Id: Ic2163a951bdfcaf7c54144008ae698b32d5e59a2
2024-01-10gnu: Add r-jaspar2020.nafkhamdc
* gnu/packages/bioconductor.scm (r-jaspar2020): New variable. Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
2024-01-10gnu: Add r-dsb.nafkhamdc
* gnu/packages/bioconductor.scm (r-dsb): New variable. Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd
2024-01-10gnu: Add r-escape.nafkhamdc
* gnu/packages/bioconductor.scm (r-escape): New variable. Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
2024-01-05gnu: r-edger: Update to 4.0.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.5. Change-Id: Ibf41684a81da1a842f1a8e41309113fb50db6ef9
2024-01-05gnu: Add r-scrnaseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scrnaseq): New variable. Change-Id: Iee25b59af0000f4d2fd7482183b43404840a336c
2024-01-02gnu: Add r-toast.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-toast): New variable. Change-Id: I922508bce0bdf0304e2f40d93a63ffdb58d03aa6
2024-01-02gnu: Add r-epidish.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-epidish): New variable. Change-Id: Ib8ca5980149a5d3eabb3d4a68ae686b855e372d4
2024-01-02gnu: Add r-scgate.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-scgate): New variable. Change-Id: I441bbea5a68882f5f619dea72abdf84619c9d02f
2024-01-01gnu: r-batchelor: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.1. Change-Id: Ic541acacc7e02951f0b2cc6d08d257fe22d7d4b4
2024-01-01gnu: r-genomeinfodb: Update to 1.38.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.5. Change-Id: I000bf46cc66ed4a6f1e44b12989326c121acde4c
2024-01-01gnu: r-sparsearray: Update to 1.2.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.3. Change-Id: I5907db78a1261a3dbe0390737cc357bafbdb331e
2024-01-01gnu: r-genomicscores: Update to 2.14.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.3. Change-Id: I973721a2ba3a5c5d7e23c4063f363fea7bdfe77e
2024-01-01gnu: r-metapod: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.10.1. Change-Id: Iafd5b48420d12f9fd02966c83914feb1ef38e510
2024-01-01gnu: r-biocneighbors: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.20.1. Change-Id: I34aa795404d8c083585f83d5a02810a9005bef32
2024-01-01gnu: r-genomeinfodb: Update to 1.38.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.4. Change-Id: Icdd7237e7a4d15a6b9554fca77423148d6f7438e
2023-12-15gnu: r-tximeta: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.1. Change-Id: Id29bdc8c00f957854ed5ba38c2cbbb91e04bbf78
2023-12-15gnu: r-biomvrcns: Update to 1.42.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.42.2. Change-Id: I956718d0ecb503546564434fbea82a886d4de9f4
2023-12-15gnu: r-basilisk: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.1. Change-Id: I7c05a536a58ca7bc7d24fdb5f39a420611bebf45
2023-12-15gnu: r-basilisk-utils: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.14.1. Change-Id: Icda5e71c0a709e2de4c6303774c37224a9476d62
2023-12-15gnu: r-gviz: Update to 1.46.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.46.1. Change-Id: I10e68ee45be2cd2cddc217e75ee6667323c4dd57
2023-12-15gnu: r-mscoreutils: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.14.1. Change-Id: Ia978e23f1f0bf5a58ffa2c76a65c5f9982629aac
2023-12-15gnu: r-sparsearray: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.2. Change-Id: I96f367bf5c39c973e1c5fad3b9620bfcaf88417a
generated by cgit