aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages/bioconductor.scm
diff options
context:
space:
mode:
authorRicardo Wurmus <rekado@elephly.net>2024-01-20 19:52:24 +0100
committerRicardo Wurmus <rekado@elephly.net>2024-01-20 19:52:24 +0100
commitd441454ba8923e4d76c59a57b01c285c1458b965 (patch)
tree037993b934ae63730a4fc801923c0964158626bf /gnu/packages/bioconductor.scm
parent2b3a21c55fb7891b6618c8764335a573dbe3a116 (diff)
downloadguix-d441454ba8923e4d76c59a57b01c285c1458b965.tar.gz
guix-d441454ba8923e4d76c59a57b01c285c1458b965.zip
gnu: Add r-methylclockdata.
* gnu/packages/bioconductor.scm (r-methylclockdata): New variable. Change-Id: Id76373a9aec8276dcfd1ec3428d2ce9c81cc51d2
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm28
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b98d831450..6355be2323 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2054,6 +2054,34 @@ gene expression indicate a role for enhancer priming in immune response\", publi
in Nature Genetics, January 2018.")
(license license:gpl2+)))
+(define-public r-methylclockdata
+ (package
+ (name "r-methylclockdata")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "methylclockData" version
+ 'experiment))
+ (sha256
+ (base32 "0q4hiclws0fg03kwvbdwka024gghl1hbmmfficxfghslll78mc3y"))))
+ (properties `((upstream-name . "methylclockData")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-experimenthub r-experimenthubdata))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/isglobal-brge/methylclockData")
+ (synopsis "Data for methylclock package")
+ (description
+ "This package contains a collection of 9 datasets, andrews and bakulski
+cord blood, blood gse35069, blood gse35069 chen, blood gse35069 complete,
+combined cord blood, cord bloo d gse68456, gervin and lyle cord blood,
+guintivano dlpfc and saliva gse48472. The data are used to estimate cell
+counts using Extrinsic epigenetic age acceleration (EEAA) method. It also
+contains a collection of 12 datasets to use with @code{MethylClock} package to
+estimate chronological and gestational DNA methylation with estimators to use
+with different methylation clocks.")
+ (license license:expat)))
+
(define-public r-mousegastrulationdata
(package
(name "r-mousegastrulationdata")