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path: root/gnu/packages/bioconductor.scm
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2020-09-14gnu: r-activedriverwgs: Update to 1.1.0....* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.0. [propagated-inputs]: Remove r-plyr. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-09-11gnu: r-codedepends: Comment why it is in bioconductor.scm....* gnu/packages/bioconductor.scm (r-codedepends): Add comment. zimoun
2020-09-11gnu: Add r-fhtest....* gnu/packages/bioconductor.scm (r-fhtest): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-09-11gnu: Add r-interval....* gnu/packages/bioconductor.scm (r-interval): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-09-11gnu: Add r-icens....* gnu/packages/bioconductor.scm (r-icens): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-09-04gnu: r-cicero: Update to 1.6.2....* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.2. Ricardo Wurmus
2020-09-04gnu: r-mixomics: Update to 6.12.2....* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.2. Ricardo Wurmus
2020-09-04gnu: r-atacseqqc: Update to 1.12.4....* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.4. Ricardo Wurmus
2020-09-04gnu: r-gkmsvm: Update to 0.81.0....* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.81.0. Ricardo Wurmus
2020-09-04gnu: r-chippeakanno: Update to 3.22.3....* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.3. Ricardo Wurmus
2020-08-20gnu: r-biocset: Update to 1.2.2....* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.2. Ricardo Wurmus
2020-08-20gnu: r-experimenthub: Update to 1.14.2....* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.2. Ricardo Wurmus
2020-08-20gnu: r-variancepartition: Update to 1.18.3....* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.3. Ricardo Wurmus
2020-08-20gnu: r-rsubread: Update to 2.2.6....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.6. Ricardo Wurmus
2020-08-20gnu: r-rbowtie: Update to 1.28.1....* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.1. Ricardo Wurmus
2020-08-20gnu: r-biocfilecache: Update to 1.12.1....* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.1. Ricardo Wurmus
2020-08-20gnu: r-rbowtie2: Update to 1.10.1....* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.1. Ricardo Wurmus
2020-08-20gnu: r-motifstack: Update to 1.32.1....* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.1. Ricardo Wurmus
2020-08-20gnu: r-clusterprofiler: Update to 3.16.1....* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.16.1. [propagated-inputs]: Add r-rlang. Ricardo Wurmus
2020-08-20gnu: r-gosemsim: Update to 2.14.1....* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.14.1. Ricardo Wurmus
2020-08-20gnu: r-oligo: Update to 1.52.1....* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.1. Ricardo Wurmus
2020-08-20gnu: r-oligoclasses: Update to 1.50.4....* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.4. Ricardo Wurmus
2020-08-16gnu: r-abseqr: Add pandoc-citeproc....* gnu/packages/bioconductor.scm (r-abseqr)[inputs]: Add pandoc-citeproc. Ricardo Wurmus
2020-08-16gnu: r-abseqr: Use pandoc instead of ghc-pandoc....* gnu/packages/bioconductor.scm (r-abseqr)[inputs]: Replace ghc-pandoc with pandoc. Ricardo Wurmus
2020-08-12gnu: r-nmf: Update to 0.23.0....* gnu/packages/bioconductor.scm (r-nmf): Update to 0.23.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-08-11gnu: Add r-m3c....* gnu/packages/bioconductor.scm (r-m3c): New variable. Ricardo Wurmus
2020-07-16gnu: Use HTTPS for github.com (and subdomains) home pages....* gnu/packages/bioconductor.scm (r-qvalue)[home-page]: Use HTTPS and follow permanent redirection. * gnu/packages/check.scm (python-codecov, python-nosexcover) [home-page]: Likewise. * gnu/packages/cran.scm (r-ffbase, r-ggrepel, r-valr) [home-page]: Likewise. * gnu/packages/crates-io.scm (rust-block-0.1, rust-dispatch-0.1) (rust-objc-0.2, rust-objc-exception-0.1) (rust-objc-foundation-0.1, rust-objc-id-0.1, rust-objc-test-utils-0.0) (rust-onig-5.0, rust-onig-sys-69.2, rust-vergen-3.1) [home-page]: Likewise. * gnu/packages/finance.scm (ledger-agent, keepkey-agent) [home-page]: Likewise. * gnu/packages/haskell-check.scm (ghc-tasty-expected-failure) [home-page]: Likewise. * gnu/packages/haskell-web.scm (ghc-bsb-http-chunked, ghc-warp) (ghc-warp-tls)[home-page]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-configurator, ghc-hasktags) (ghc-linear, ghc-newtype-generics, ghc-retry, ghc-xdg-basedir) (ghc-pretty-show)[home-page]: Likewise. * gnu/packages/java.scm (java-javax-inject)[home-page]: Likewise. * gnu/packages/libffi.scm (ruby-ffi)[home-page]: Likewise. * gnu/packages/linux.scm (procenv)[home-page]: Likewise. * gnu/packages/python-web.scm (python-aiodns, python-flask-htpasswd) (python-pycares)[home-page]: Likewise. * gnu/packages/python-xyz.scm (python-progressbar33, python-whatever) (python-funcy)[home-page]: Likewise. * gnu/packages/ruby.scm (ruby-rubyzip, ruby-spinach, ruby-gherkin-ruby) (ruby-code-statistics, ruby-colorize, ruby-wwtd)[home-page]: Likewise. Tobias Geerinckx-Rice
2020-07-16gnu: r-activepathways: Update to 1.0.2....* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.2. [propagated-inputs]: Remove r-metap. Ricardo Wurmus
2020-07-16gnu: r-rsubread: Update to 2.2.4....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.4. Ricardo Wurmus
2020-07-16gnu: r-variancepartition: Update to 1.18.2....* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.2. Ricardo Wurmus
2020-07-12gnu: Remove ".git" from "https://github/…/….git"....Until now, 'lookup-origin' and thus 'lookup-origin-revision' in (guix swh) would sometimes return #f for these because the ".git" URLs are redirects to the non-".git" URLs. Consequently, 'guix lint -c archival' would keep saying "scheduled Software Heritage archival"; likewise, the fallback download code would fail. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/aidc.scm, gnu/packages/algebra.scm, gnu/packages/android.scm, gnu/packages/animation.scm, gnu/packages/arcan.scm, gnu/packages/assembly.scm, gnu/packages/audio.scm, gnu/packages/authentication.scm, gnu/packages/avr.scm, gnu/packages/axoloti.scm, gnu/packages/backup.scm, gnu/packages/bash.scm, gnu/packages/benchmark.scm, gnu/packages/bioconductor.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/boost.scm, gnu/packages/build-tools.scm, gnu/packages/c.scm, gnu/packages/calendar.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/chez.scm, gnu/packages/clojure.scm, gnu/packages/code.scm, gnu/packages/compression.scm, gnu/packages/compton.scm, gnu/packages/coq.scm, gnu/packages/cpp.scm, gnu/packages/cran.scm, gnu/packages/crypto.scm, gnu/packages/curl.scm, gnu/packages/databases.scm, gnu/packages/datastructures.scm, gnu/packages/debug.scm, gnu/packages/disk.scm, gnu/packages/distributed.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/dns.scm, gnu/packages/docker.scm, gnu/packages/education.scm, gnu/packages/efi.scm, gnu/packages/elixir.scm, gnu/packages/emacs-xyz.scm, gnu/packages/embedded.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/erlang.scm, gnu/packages/fabric-management.scm, gnu/packages/file-systems.scm, gnu/packages/finance.scm, gnu/packages/firmware.scm, gnu/packages/flashing-tools.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/fpga.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/genealogy.scm, gnu/packages/genimage.scm, gnu/packages/geo.scm, gnu/packages/gimp.scm, gnu/packages/gl.scm, gnu/packages/gnome-xyz.scm, gnu/packages/gnome.scm, gnu/packages/gnuzilla.scm, gnu/packages/golang.scm, gnu/packages/gpodder.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/groff.scm, gnu/packages/groovy.scm, gnu/packages/gtk.scm, gnu/packages/guile-xyz.scm, gnu/packages/guile.scm, gnu/packages/hardware.scm, gnu/packages/haskell-apps.scm, gnu/packages/haskell-xyz.scm, gnu/packages/hexedit.scm, gnu/packages/i2p.scm, gnu/packages/ibus.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/ipfs.scm, gnu/packages/java-graphics.scm, gnu/packages/java-maths.scm, gnu/packages/java.scm, gnu/packages/javascript.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/jupyter.scm, gnu/packages/kodi.scm, gnu/packages/language.scm, gnu/packages/lego.scm, gnu/packages/less.scm, gnu/packages/libusb.scm, gnu/packages/linux.scm, gnu/packages/lirc.scm, gnu/packages/lisp-xyz.scm, gnu/packages/llvm.scm, gnu/packages/logging.scm, gnu/packages/lolcode.scm, gnu/packages/lua.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/maths.scm, gnu/packages/maven.scm, gnu/packages/mes.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/node-xyz.scm, gnu/packages/ocaml.scm, gnu/packages/ocr.scm, gnu/packages/onc-rpc.scm, gnu/packages/opencl.scm, gnu/packages/opencog.scm, gnu/packages/pantheon.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/perl6.scm, gnu/packages/phabricator.scm, gnu/packages/popt.scm, gnu/packages/printers.scm, gnu/packages/prolog.scm, gnu/packages/protobuf.scm, gnu/packages/pulseaudio.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python-xyz.scm, gnu/packages/qt.scm, gnu/packages/radio.scm, gnu/packages/rails.scm, gnu/packages/rdf.scm, gnu/packages/rednotebook.scm, gnu/packages/rpc.scm, gnu/packages/rsync.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/screen.scm, gnu/packages/security-token.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/shellutils.scm, gnu/packages/simh.scm, gnu/packages/sml.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/stenography.scm, gnu/packages/sync.scm, gnu/packages/syncthing.scm, gnu/packages/synergy.scm, gnu/packages/telephony.scm, gnu/packages/terminals.scm, gnu/packages/tex.scm, gnu/packages/texinfo.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tmux.scm, gnu/packages/tor.scm, gnu/packages/toys.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/virtualization.scm, gnu/packages/vlang.scm, gnu/packages/vnc.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wireservice.scm, gnu/packages/wm.scm, gnu/packages/wxwidgets.scm, gnu/packages/xdisorg.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, tests/lint.scm: Remove trailing ".git" from 'git-reference' URL. Ludovic Courtès
2020-07-04gnu: r-depecher: Update to 1.4.1....* gnu/packages/bioconductor.scm (r-depecher): Update to 1.4.1. Ricardo Wurmus
2020-07-04gnu: r-rsubread: Update to 2.2.3....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.3. Ricardo Wurmus
2020-06-22gnu: Add r-rgreat....* gnu/packages/bioconductor.scm (r-rgreat): New variable. Ricardo Wurmus
2020-06-22gnu: r-gdsfmt: Update to 1.24.1....* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.1. Ricardo Wurmus
2020-06-22gnu: r-cicero: Update to 1.6.1....* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.1. [propagated-inputs]: Add r-stringi. Ricardo Wurmus
2020-06-22gnu: r-cytoml: Update to 2.0.5....* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.5. [propagated-inputs]: Add r-xml2. Ricardo Wurmus
2020-06-22gnu: r-wiggleplotr: Update to 1.12.1....* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.1. Ricardo Wurmus
2020-06-22gnu: r-regioner: Update to 1.20.1....* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.1. Ricardo Wurmus
2020-06-14gnu: r-flowworkspace: Update to 4.0.6....* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.6. Ricardo Wurmus
2020-06-13gnu: Add r-pcatools....* gnu/packages/bioconductor.scm (r-pcatools): New variable. Ricardo Wurmus
2020-06-13gnu: r-biodist: Update to 1.60.0....* gnu/packages/bioconductor.scm (r-biodist): Update to 1.60.0. Ricardo Wurmus
2020-06-13gnu: r-biocworkflowtools: Update to 1.14.0....* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.14.0. Ricardo Wurmus
2020-06-13gnu: r-biocset: Update to 1.2.1....* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-biocpkgtools: Update to 1.6.0....* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.6.0. Ricardo Wurmus
2020-06-13gnu: r-biocor: Update to 1.12.0....* gnu/packages/bioconductor.scm (r-biocor): Update to 1.12.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-bioconcotk: Update to 1.8.0....* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.8.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-multiassayexperiment: Update to 1.14.0....* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.14.0. Ricardo Wurmus
2020-06-13gnu: r-experimenthub: Update to 1.14.0....* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-biocgraph: Update to 1.50.0....* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.50.0. Ricardo Wurmus
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