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* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.82.0.
[propagated-inputs]: Remove r-biocgenerics; add r-matrixgenerics.
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* gnu/packages/bioconductor.scm (r-gage): Update to 2.50.0.
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* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.24.0.
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* gnu/packages/bioconductor.scm (r-enmix): Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.0.
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* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.0.
[propagated-inputs]: Remove r-geneplotter.
[native-inputs]: Add r-rmarkdown.
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* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.16.0.
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* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.50.0.
[native-inputs]: Add r-knitr.
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* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.36.0.
[propagated-inputs]: Remove r-ggvenndiagram and r-rcolorbrewer; add r-aplot, r-tibble,
and r-yulab-utils.
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* gnu/packages/bioconductor.scm (r-champ): Update to 2.30.0.
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* gnu/packages/bioconductor.scm (r-category): Update to 2.66.0.
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* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.68.0.
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* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.68.0.
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* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-biomart): Update to 2.56.0.
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* gnu/packages/bioconductor.scm (r-biobase): Update to 2.60.0.
[native-inputs]: Add r-knitr.
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* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.30.0.
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* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.8.0.
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* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-annotate): Update to 1.78.0.
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* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-affyio): Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.76.0.
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* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.0.
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* gnu/packages/bioconductor.scm (r-italics): Update to 2.60.0.
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* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 1.21.0.
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* gnu/packages/bioconductor.scm (r-iranges): Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-bluster): Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-dss): Update to 2.48.0.
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* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.14.0.
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* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.25.0.
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* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.6.0.
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