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authorRicardo Wurmus <rekado@elephly.net>2023-04-28 17:59:52 +0200
committerRicardo Wurmus <rekado@elephly.net>2023-04-29 20:27:55 +0200
commit219901a7b26062e9e9a6fb9df1b30aca2e4b778e (patch)
tree6b462d7a055758bbbbc34ddd4a7bb48364f2a488
parent6c700d8b3aba4c7c4a5b98e6b4cc802e5b51bcfb (diff)
downloadguix-219901a7b26062e9e9a6fb9df1b30aca2e4b778e.tar.gz
guix-219901a7b26062e9e9a6fb9df1b30aca2e4b778e.zip
gnu: r-chipseeker: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.36.0. [propagated-inputs]: Remove r-ggvenndiagram and r-rcolorbrewer; add r-aplot, r-tibble, and r-yulab-utils.
-rw-r--r--gnu/packages/bioconductor.scm11
1 files changed, 6 insertions, 5 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 663d6d9b1e..f4ae41ff0e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6092,18 +6092,19 @@ regions and to highlight copy number alterations.")
(define-public r-chipseeker
(package
(name "r-chipseeker")
- (version "1.34.1")
+ (version "1.36.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "ChIPseeker" version))
(sha256
(base32
- "0jr9mc79di0r3xrc7m27vwk85qa4fpcwp4nb77pr9s6jbv23773r"))))
+ "0nngygci1g8bb3rsica348zi59hskr6hf8319csia6cman89gvqm"))))
(build-system r-build-system)
(native-inputs
(list r-knitr))
(propagated-inputs
(list r-annotationdbi
+ r-aplot
r-biocgenerics
r-boot
r-enrichplot
@@ -6112,17 +6113,17 @@ regions and to highlight copy number alterations.")
r-genomicranges
r-genomicfeatures
r-ggplot2
- r-ggvenndiagram
r-gplots
r-gtools
r-dplyr
r-plotrix
r-dplyr
r-magrittr
- r-rcolorbrewer
r-rtracklayer
r-s4vectors
- r-txdb-hsapiens-ucsc-hg19-knowngene))
+ r-tibble
+ r-txdb-hsapiens-ucsc-hg19-knowngene
+ r-yulab-utils))
(home-page "https://www.bioconductor.org/packages/ChIPseeker/")
(synopsis "ChIPseeker for ChIP peak annotation, comparison, and visualization")
(description "This package implements functions to retrieve the nearest