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2024-09-06gnu: r-climaemet: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-climaemet): Update to 1.4.0. [propagated-inputs]: Add r-xml2. Change-Id: I8a1250894c6daad16f113ec67e5a22543c35d395
2024-09-06gnu: r-broom-helpers: Update to 1.17.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-broom-helpers): Update to 1.17.0. [propagated-inputs]: Add r-cards. Change-Id: I11f08aa6500d9d88dc32ce49d72939078c4596cf
2024-09-06gnu: r-valr: Update to 0.8.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-valr): Update to 0.8.2. Change-Id: Ief21d6bdf38193d996df513e16ae74350e8ff92c
2024-09-06gnu: r-archivist: Update to 2.3.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-archivist): Update to 2.3.8. [native-inputs]: Remove r-knitr. Change-Id: I826db8b923c7954aafab2bb922ca814e6b718373
2024-09-06gnu: r-geometry: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-geometry): Update to 0.5.0. Change-Id: I8097c44562c17e5892e55529894664ef9f1ea221
2024-09-06gnu: Add r-cards.Ricardo Wurmus
* gnu/packages/cran.scm (r-cards): New variable. Change-Id: I17c61d254407574610f78cb4afd21d8829632922
2024-09-06gnu: lcsync: Update to 0.3.1.Vagrant Cascadian
* gnu/packages/networking.scm (lcsync): Update to 0.3.1.
2024-09-06gnu: lcrq: Add compiler optimizations.Vagrant Cascadian
* gnu/packages/networking.scm (lcrq)[arguments]: Pass compiler optimizations to configure. [phases]: Add 'speedtest phase.
2024-09-06gnu: lcrq: Update to 0.2.1.Vagrant Cascadian
* gnu/packages/networking.scm (lcrq): Update to 0.2.1.
2024-09-06gnu: guile-hoot: Update to 0.5.0.David Thompson
* gnu/packages/guile-xyz.scm (guile-hoot): Update to 0.5.0. Change-Id: I6f205218eb9b2044378ebbda736407a3a85035b1
2024-09-06gnu: trealla: Update to 2.55.35.jgart
* gnu/packages/prolog.scm (trealla): Update to 2.55.35. Change-Id: Ibdc23c3f443d55a4e2f8c256531b64a97fc42c2f
2024-09-06gnu: trealla: Update to 2.55.34.jgart
* gnu/packages/prolog.scm (trealla): Update to 2.55.34. Change-Id: Ida254b8f5877291cbcf8ac6ccb5e45a2f6d79a7f
2024-09-06Add file to core-packages team.Andreas Enge
* etc/teams.scm (core-packages): Add multiprecision.scm, which contains inputs for gcc. Change-Id: I36bf34450942c55529a471838fcfca29ceb9ae45
2024-09-06Add myself to teams.Andreas Enge
* etc/teams.scm: Add teams to myself. Change-Id: I4d8c5bc5144cdd094063960c079527628ace4bbc
2024-09-07gnu: kmime: Disable testFancyFormat test.Zheng Junjie
Fixes <issues.guix.gnu.org/73067> * gnu/packages/kde-pim.scm (kmime)[arguments]: Disable testFancyFormat test. Change-Id: Id1b459832a6a0b2d7636855774a1ffaadb1aacba
2024-09-06gnu: qcoro-qt6: Adjust synopsis.Zheng Junjie
* gnu/packages/qt.scm (qcoro-qt6)[synopsis]: Adjust it. Change-Id: Iecd9edbacca5805a54bcaf84bcec205367b96a05 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-09-06gnu: qcoro-qt: Build with -fPICDoğan Çeçen
* gnu/packages/qt.scm (qcoro-qt5, qcoro-qt6)[arguments]: Adjust configure-flags to add -fPIC to CMAKE_CXX_FLAGS. Change-Id: I5ed2ee18cec120b282863ce6a5f6b6b149059515 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-09-06gnu: kwin: Disable failing test on aarch64.Roman Scherer
* gnu/packages/kde-plasma.scm (kwin)[arguments]: Disable failing test on aarch64. Change-Id: Iecd9edbacca5805a54bcaf84bcec205367b96a05 Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-09-06gnu: nano: Update to 8.2.Andy Tai
* gnu/packages/text-editors.scm (nano): Update to 8.2. Change-Id: I72d3ead40cc5cabf52931567195d6bafd3e86d6e Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-09-06gnu: flatpak: Update to 1.14.10 [security fixes].Zheng Junjie
Fixes CVE-2024-42472. Fixes <https://issues.guix.gnu.org/73059>. * gnu/packages/package-management.scm (flatpak): Update to 1.14.10. * gnu/packages/patches/flatpak-unset-gdk-pixbuf-for-sandbox.patch: Adjust it. Change-Id: Ia0bd866ee46e8b0cd24d37d14df61cdc22692d4e
2024-09-06gnu: bubblewrap: Update to 0.10.0.Zheng Junjie
* gnu/packages/virtualization.scm (bubblewrap): Update to 0.10.0. [source]: Switch to git-fetch. [build-system]: Switch to meson-build-system. [native-inputs]: Add pkg-config. [arguments]: Use G-expressions, Remove trailing #t. Change-Id: Id1b459832a6a0b2d7636855774a1ffaadb1aacba
2024-09-06gnu: xournalpp: Show icons.Nicolas Goaziou
Fixes: <https://issues.guix.gnu.org/51968> * gnu/packages/pdf.scm (xournalpp)[arguments]: Add phase to wrap GDK_PIXBUF_MODULE_FILE. [inputs]: Add ADWAITA-ICON-THEME. Change-Id: Ie0e20249462c66f974b2fe1e3156d5fc9cb01b62
2024-09-06activation: Fix TOCTTOU in mkdir-p/perms.Maxime Devos
Fixes <https://issues.guix.gnu.org/47584>. I removed the 'Based upon mkdir-p from (guix build utils)' comment because it's quite a bit different now. * gnu/build/activation.scm (verify-not-symbolic): Delete. (mkdir-p/perms): Rewrite in terms of 'openat'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Change-Id: Id2f5bcbb903283afd45f6109190210d02eb383c7
2024-09-06gnu: python-pytorch-lightning: Update to commit 2064887.David Elsing
* gnu/packages/machine-learning.scm (python-pytorch-lightning): Update to commit 2064887. [source]: Update URL. [arguments]<#:tests-flags>: Skip additional failing tests. <#:phases>: Adjust 'patch-version-detection' phase.
2024-09-06gnu: python-torchmetrics: Update to 1.4.1.David Elsing
* gnu/packages/machine-learning.scm (python-torchmetrics): Update to 1.4.1. [source]: Switch to GitHub repository. [arguments]: New field. [propagated-inputs]: Add python-lightning-utilities. [home-page]: Update URL.
2024-09-06gnu: python-lightning-utilities: Update to 0.11.6.David Elsing
* gnu/packages/machine-learning.scm (python-lightning-utilities): Update to 0.11.6. [source] Adjust URI. [build-system]: Move to pyproject-build-system.
2024-09-06gnu: python-torchvision: Update to 0.19.0.David Elsing
* gnu/packages/machine-learning.scm (python-torchvision): Update to 0.19.0. [arguments]: Add 'setenv' phase for finding libjpeg-turbo. [inputs]: Add ffmpeg.
2024-09-06gnu: python-pytorch: Update to 2.4.0.David Elsing
This also updates the qnnpack-pytorch package. * gnu/packages/machine-learning.scm (%python-pytorch-version): Set to 2.4.0. (%python-pytorch-src): Adjust hash accordingly. [source]: Remove obsolete file deletions in snippet. (python-pytorch)[arguments]<#:phases>: Disable telemetry and set Python install directory. Remove obsolete USE_FFMPEG, USE_OPENCV and USE_PYTORCH_QNNPACK environment variables. [native-inputs]: Remove python-typing-extensions. [inputs]: Add brotli, cpp-httplib and zlib. Remove qnnpack. Use oneapi-dnnl, qnnpack-pytorch and xnnpack for all systems. [propagated-inputs]: Add onnx and python-typing-extensions. Use cpuinfo for all systems. [supported-systems]: New field. (python-pytorch-for-r-torch)[inputs]: Add qnnpack. * gnu/packages/patches/python-pytorch-fix-codegen.patch: Adjust patch. * gnu/packages/patches/python-pytorch-runpath.patch: Adjust patch. * gnu/packages/patches/python-pytorch-system-libraries.patch: Adjust patch. * gnu/packages/patches/python-pytorch-without-kineto.patch: Adjust patch.
2024-09-06gnu: cpp-httplib: Update to 0.16.0.David Elsing
* gnu/packages/cpp.scm (cpp-httplib): Update to 0.16.0.
2024-09-06gnu: gloo: Update to commit 81925d1.David Elsing
* gnu/packages/machine-learning.scm (gloo): Update to commit 81925d1. [arguments]: Add -DCMAKE_CXX_STANDARD=17 to #:configure-flags. [supported-systems]: New field.
2024-09-06gnu: onnx-optimizer: Update to 0.3.19.David Elsing
* gnu/packages/machine-learning.scm (onnx-optimizer): Update to 0.3.19. * gnu/packages/patches/onnx-optimizer-system-library.patch: Adjust patch. Co-authored-by: Andy Tai <atai@atai.org>
2024-09-06gnu: onnx: Update to 1.16.2.David Elsing
* gnu/packages/machine-learning.scm (onnx): Update to 1.16.2. [source]: Remove patch. [build-system]: Move to pyproject-build-system. [arguments]<#:tests?>: Disable for systems where python-nbval is not supported. <#:phases>: Remove 'relax-requirements' phase. Pass "-DONNX_BUILD_TESTS" to CMake depending on tests?. [native-inputs]: Add python-fb-re2 and python-parameterized-next. Remove python-nbval on unsupported systems. * gnu/packages/patches/onnx-shared-libraries.patch: Adjust patch. * gnu/packages/patches/onnx-skip-model-downloads.patch: Adjust patch. * gnu/packages/patches/onnx-use-system-googletest.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Co-authored-by: Andy Tai <atai@atai.org>
2024-09-06gnu: Remove onnx-for-torch2.David Elsing
* gnu/packages/machine-learning.scm (onnx-for-torch2): Delete variable.
2024-09-06gnu: Remove onnx-optimizer-for-torch2.David Elsing
* gnu/packages/machine-learning.scm (onnx-optimizer-for-torch2): Delete variable.
2024-09-06gnu: Add python-parameterized-next.David Elsing
* gnu/packages/check.scm (python-parameterized-next): New variable.
2024-09-06gnu: python-nbval: Update to 0.11.0.David Elsing
* gnu/packages/python-check.scm (python-nbval): Update to 0.11.0. [arguments]<#:phases>: Adjust 'check' phase. [native-inputs]: Remove python-pytest. [propagated-inputs]: Add python-coverage and python-pytest. Remove python-six.
2024-09-06gnu: Add xnnpack-for-r-torch.David Elsing
* gnu/packages/machine-learning.scm (xnnpack-for-r-torch): New variable. (xnnpack)[inputs]: Use xnnpack-for-r-torch instead of xnnpack.
2024-09-06gnu: xnnpack: Update to commit 08f1489.David Elsing
More tests fail when building the shared library, so they are disabled. The scripts to generate the autogenerated files run all commands at once, so they are converted to Makefiles first. * gnu/packages/machine-learning.scm (xnnpack): Update to commit 08f1489. [source]: Remove patch. Adjust snippet. [arguments]<#:configure-flags>: Add "-DXNNPACK_BUILD_TESTS=OFF". <#:tests?>: Disable tests. <#:phases>: Adjust 'fix-cmake' phase. Convert code generation scripts to Makefiles and run them. Run different missing scripts. * gnu/packages/patches/xnnpack-remove-broken-tests.patch: Remove file. * gnu/packages/patches/xnnpack-system-libraries.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove them.
2024-09-06gnu: fbgemm: Update to 0.7.0.David Elsing
* gnu/packages/machine-learning.scm (fbgemm): Update to 0.7.0.
2024-09-06gnu: oneapi-dnnl: Update to 3.5.3.David Elsing
* gnu/packages/machine-learning.scm (oneapi-dnnl): Update to 3.5.3.
2024-09-06gnu: nnpack: Depend on python-peachpy only for x86_64.David Elsing
* gnu/packages/machine-learning.scm (nnpack)[native-inputs]: Provide python-peachpy only when 'target-x86-64?'.
2024-09-06gnu: cpuinfo: Update to commit 05332fd.David Elsing
Also disable tests on aarch64, because they fail in the build container. * gnu/packages/parallel.scm (cpuinfo): Update to commit 05332fd. [arguments]<#:tests?>: Disable on aarch64. [supported-systems]: Remove field.
2024-09-06gnu: pthreadpool: Update to commit 560c60d.David Elsing
* gnu/packages/parallel.scm (pthreadpool): Update to commit 560c60d.
2024-09-06gnu: flatbuffers-next: Update to 24.3.25.David Elsing
* gnu/packages/serialization.scm (flatbuffers-next): Update to 24.3.25.
2024-09-06gnu: python-optree: Update to 0.11.0.David Elsing
* gnu/packages/python-xyz.scm (python-optree): Update to 0.11.0. [arguments]<#:test-flags>: Disable failing test.
2024-09-06gnu: Remove python-typing-extensions-4.10.David Elsing
* gnu/packages/machine-learning.scm (python-typing-extensions-4.10): Delete variable. * gnu/packages/machine-learning.scm (python-pytorch)[native-inputs] Replace python-typing-extensions-4.10 with python-typing-extensions.
2024-09-06gnu: asmjit: Update to commit 062e69c.David Elsing
* gnu/packages/cpp.scm (asmjit): Update to commit 062e69c.
2024-09-06guix build: ‘--log-file’ honors the configured substitute URLs.Ludovic Courtès
* guix/scripts/build.scm (guix-build): When defining ‘urls’, add ‘substitute-urls’ call. * doc/guix.texi (Additional Build Options): Adjust ‘--log-file’ documentation. Change-Id: I40f0647efe64ba3a63a6379b8da80b0da8910f48
2024-09-06gnu: dezyne: Update to 2.18.3.Janneke Nieuwenhuizen
* gnu/packages/dezyne.scm (dezyne): Update. [propagated]: Move into... [inputs]: ...this. Change-Id: I2da63e128e8f990a409b36ffaa38e56029740292
2024-09-06Revert "gnu: gsl: Add debug output."Ludovic Courtès
This reverts commit 36e30a33e8c67d15ccfae6e4a4289c193f0759ad, which triggers too many rebuilds (‘gsl’ has 2.9K dependents). Change-Id: Ia0f0968b23dbf8234c69973eaf71d33a2e8c0690
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