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2021-12-13packages: 'modify-inputs' preserves and introduces input labels if needed....Fixes a bug whereby, in an expression like this: (modify-inputs lst (delete ...) (prepend ...)) the 'delete' clause would have no effect because 'prepend' would pass it a label-less input list. * guix/packages.scm (inputs-sans-labels): Remove. (modify-inputs): In the 'prepend' and 'append' cases, preserve/add input labels instead of removing them. Ludovic Courtès
2021-12-13gnu: binutils@2.33: Remove non-applicable patches....* gnu/packages/base.scm (binutils-2.33)[source]: Add empty 'patches' field. Ludovic Courtès
2021-12-13gnu: python-aws-xray-sdk: Set PYTHONPATH when running tests....* gnu/packages/python-web.scm (python-aws-xray-sdk)[arguments]: Check: Set PYTHONPATH. Ludovic Courtès
2021-12-13gnu: python-jsonpickle: Update to 1.5.2....This brings support for NumPy 1.20+, which we need. * gnu/packages/python-web.scm (python-jsonpickle): Update to 1.5.2. Ludovic Courtès
2021-12-13gnu: python-jose: Add missing dependency....* gnu/packages/python-web.scm (python-jose)[propagated-inputs]: Add PYTHON-ECDSA. Ludovic Courtès
2021-12-13Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-12-13doc: Add missing closing paren....* doc/guix.texi (Desktop Services): Add missing closing paren in example. Ludovic Courtès
2021-12-13doc: Handle '&nbsp' when syntax-highlighting HTML....* doc/build.scm (syntax-highlighted-html)[build](entity->string): Handle "&nbsp". Ludovic Courtès
2021-12-13gnu: Add r-sanssouci....* gnu/packages/bioconductor.scm (r-sanssouci): New variable. Ricardo Wurmus
2021-12-13gnu: Add r-isoformswitchanalyzer....* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable. Ricardo Wurmus
2021-12-13gnu: Add r-drimseq....* gnu/packages/bioconductor.scm (r-drimseq): New variable. Ricardo Wurmus
2021-12-13gnu: Add r-dearseq....* gnu/packages/bioconductor.scm (r-dearseq): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Marcel Schilling
2021-12-12gnu: linux-libre 4.4: Update to 4.4.294....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.294. (linux-libre-4.4-pristine-source): Update hash. Leo Famulari
2021-12-12gnu: linux-libre 4.9: Update to 4.9.292....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.292. (linux-libre-4.9-pristine-source): Update hash. Leo Famulari
2021-12-12gnu: linux-libre 4.14: Update to 4.14.257....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.257. (linux-libre-4.14-pristine-source): Update hash. Leo Famulari
2021-12-12gnu: linux-libre 4.19: Update to 4.19.220....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.220. (linux-libre-4.19-pristine-source): Update hash. Leo Famulari
2021-12-12gnu: linux-libre 5.4: Update to 5.4.164....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.164. (linux-libre-5.4-pristine-source): Update hash. Leo Famulari
2021-12-12gnu: linux-libre 5.10: Update to 5.10.84....* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.84. (linux-libre-5.10-pristine-source): Update hash. Leo Famulari
2021-12-12gnu: linux-libre: Update to 5.15.7....* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.7. (linux-libre-5.15-pristine-source): Update hash. Leo Famulari
2021-12-13news: Add entry about 'static-networking-service-type'....* etc/news.scm: Add entry. Ludovic Courtès
2021-12-12gnu: gaupol: Don't attempt to compile bytecode twice....* gnu/packages/video.scm (gaupol)[arguments]: Disable needless compilation with a substitution. While here, remove trailing #t's. Marius Bakke
2021-12-12gnu: mps-youtube: Disable sanity check....* gnu/packages/video.scm (mps-youtube)[arguments]: Add #:phases. Marius Bakke
2021-12-12gnu: smplayer: Remove reference to %outputs.......which no longer exists in qt-build-system. * gnu/packages/video.scm (smplayer)[arguments]: Turn into gexp. Use #$OUTPUT instead of %OUTPUTS. Remove trailing #true's. Marius Bakke
2021-12-12gnu: ruby-asciidoctor-pdf: Update to 1.6.1....* gnu/packages/ruby.scm (ruby-asciidoctor-pdf): Update to 1.6.1. [arguments]: Remove trailing #t's. Marius Bakke
2021-12-12gnu: ruby-rouge: Update to 3.26.1....* gnu/packages/ruby.scm (ruby-rouge): Update to 3.26.1. Marius Bakke
2021-12-12gnu: ruby-loofah: Update to 2.13.0....* gnu/packages/ruby.scm (ruby-loofah): Update to 2.13.0. [source]: Switch to GIT-FETCH. [arguments]: Remove. [native-inputs]: Add RUBY-HOE-MARKDOWN. Marius Bakke
2021-12-12gnu: Add ruby-hoe-markdown....* gnu/packages/ruby.scm (ruby-hoe-markdown): New variable. Marius Bakke
2021-12-12gnu: ruby-nokogiri: Update to 1.12.5....* gnu/packages/ruby.scm (ruby-nokogiri-1.10): New variable. (ruby-nokogiri): Inherit from it. Update to 1.12.5. (ruby-nokogiri-diff)[propagated-inputs]: Change from RUBY-NOKOGIRI to RUBY-NOKOGIRI-1.10. Marius Bakke
2021-12-12tests: Replace uses of deprecated 'static-networking-service'....* gnu/tests/ganeti.scm (%ganeti-os): Replace call to 'static-networking-service' by instantiating STATIC-NETWORKING-SERVICE-TYPE. * gnu/tests/networking.scm (%test-static-networking) (%openvswitch-os, %dhcpd-os): Likewise. Ludovic Courtès
2021-12-12services: Define '%loopback-static-networking'....* gnu/services/base.scm (%loopback-static-networking): New variable. (%base-services): Use it. * gnu/system/hurd.scm (%base-services/hurd): Use it. * gnu/system/install.scm (%installation-services): Use it. * doc/guix.texi (Networking Setup): Document it. Ludovic Courtès
2021-12-12services: Define '%qemu-static-networking'....* gnu/services/base.scm (%qemu-static-networking): New variable. * gnu/system/hurd.scm (%base-services/hurd): Use it. * doc/guix.texi (Networking Setup): Document it. Ludovic Courtès
2021-12-12services: static-networking: Change interface to mimic netlink....* gnu/services/base.scm (<static-networking>)[interface, ip, netmask] [gateway]: Remove. [addresses, links, routes]: New fields. [requirement]: Default to '(udev). (<network-address>, <network-link>, <network-route>): New record types. (ensure-no-separate-netmask, %ensure-no-separate-netmask): Remove. (ipv6-address?, cidr->netmask, ip+netmask->cidr) (network-set-up/hurd, network-tear-down/hurd) (network-set-up/linux, network-tear-down/linux) (static-networking->hurd-pfinet-options): New procedures. (static-networking-shepherd-service): New procedure. (static-networking-shepherd-services): Rewrite in terms of the above. (static-networking-service): Deprecate. Adjust to new 'static-networking' API. (%base-services): Likewise. * gnu/system/install.scm (%installation-services): Likewise. * gnu/system/hurd.scm (%base-services/hurd): Likewise, and separate 'loopback' from 'networking'. * gnu/build/hurd-boot.scm (set-hurd-device-translators): Remove "servers/socket/2". * gnu/tests/networking.scm (run-openvswitch-test)["networking has started on ovs0"]: Check for 'networking instead of 'networking-ovs0, which is no longer provided. * doc/guix.texi (Networking Setup): Document the new interface. Remove documentation of 'static-networking-service'. (Virtualization Services): Change Ganeti example to use the new interface. Ludovic Courtès
2021-12-12services: secret-service: Turn into a Shepherd service....* gnu/services/virtualization.scm (secret-service-activation): Remove. (secret-service-shepherd-services): New procedure. (secret-service-type)[extensions]: Remove ACTIVATION-SERVICE-TYPE extension. Add SHEPHERD-ROOT-SERVICE-TYPE and USER-PROCESSES-SERVICE-TYPE extensions. * gnu/build/secret-service.scm (delete-file*): New procedure. (secret-service-receive-secrets): Use it. Ludovic Courtès
2021-12-12services: static-networking: Use Guile-Netlink on GNU/Linux....* gnu/services/base.scm (static-networking-shepherd-service): Define 'set-up-via-ioctl', 'tear-down-via-ioctl', 'set-up-via-netlink', 'tear-down-via-netlink', and 'helpers' and use them in 'start' and 'stop'. Add (ip *) modules to 'modules'. Ludovic Courtès
2021-12-12gnu: guile-netlink: Allow cross-compilation....* gnu/packages/guile-xyz.scm (guile-netlink)[arguments]: Remove, since #:tests? #f is unnecessary. [native-inputs]: Add GUILE-3.0. Ludovic Courtès
2021-12-12doc: Add new "Networking Setup" node for the main setup options....This should make it easier to find how to get started setting up networking. * doc/guix.texi (Networking Setup): New section. (Networking Services): Remove 'static-networking-service', 'dhcp-client-service-type', 'network-manager-service-type', 'connman-service-type', 'wicd-service', 'modem-manager-service-type', 'usb-modeswitch-service-type', and 'wpa-supplicant-service-type'. Ludovic Courtès
2021-12-12tests: openvswitch: Check whether ovs0 is up....* gnu/tests/networking.scm (run-openvswitch-test)["ovs0 is up"]: New test. Ludovic Courtès
2021-12-12tests: Add 'static-networking' test....* gnu/tests/networking.scm (run-static-networking-test): New procedure. (%test-static-networking): New variable. Ludovic Courtès
2021-12-12gnu: python-pyflakes@2.2: Adjust tests for Python 3.9....* gnu/packages/patches/python-pyflakes-test-location.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-xyz.scm (python-pyflakes-2.2): Use it. Ludovic Courtès
2021-12-12gnu: sundials: Add 'release-monitoring-url' property....* gnu/packages/maths.scm (sundials)[properties]: New field. Ludovic Courtès
2021-12-12gnu: sundials: Build with '-fcommon'....* gnu/packages/maths.scm (sundials)[arguments]: Pass "-DCMAKE_C_FLAGS". Ludovic Courtès
2021-12-12gnu: guile-dsv: Update to 0.5.0...* gnu/packages/guile-xyz.scm (guile-dsv): Update to 0.5.0. Artyom V. Poptsov
2021-12-12progress: Rate limit drawing in the progress-reporter/bar....This helps smooth the output in cases where the bar is updated very quickly, for example in guix weather where it's computing derivations. * guix/progress.scm (progress-reporter/bar): Wrap the drawing code with the rate-limited procedure. Christopher Baines
2021-12-12gnu: Change source file-name suffix in rust packages....* gnu/packages/rust-apps.scm (rust-cbindgen)[source]: Change source file-name suffix from '.crate' to '.tar.gz'. * gnu/packages/crates-graphics.scm (rust-ansi-term-0.12): Likewise. (rust-ansi-term-0.11): Likewise. (rust-rgb-0.8): Likewise. * gnu/packages/crates-io.scm (rust-adler32-1): Likewise. (rust-antidote-1): Likewise. (rust-atty-0.2): Likewise. (rust-autocfg-0.1): Likewise. (rust-backtrace-sys-0.1): Likewise. (rust-base-x-0.2): Likewise. (rust-bencher-0.1): Likewise. (rust-bitflags-1): Likewise. (rust-blas-sys-0.7): Likewise. (rust-cargon-0.0): Likewise. (rust-cblas-sys-0.1): Likewise. (rust-cc-1): Likewise. (rust-cfg-if-0.1): Likewise. (rust-clang-sys-0.26): Likewise. (rust-clap-2): Likewise. (rust-clicolors-control-1): Likewise. (rust-cloudabi-0.1): Likewise. (rust-cloudabi-0.0): Likewise. (rust-cmake-0.1): Likewise. (rust-compiler-builtins-0.1): Likewise. (rust-constant-time-eq-0.1): Likewise. (rust-core-foundation-sys-0.6): Likewise. (rust-data-encoding-2): Likewise. (rust-defmac-0.2): Likewise. (rust-defmac-0.1): Likewise. (rust-dirs-1): Likewise. (rust-discard-1): Likewise. (rust-doc-comment-0.3): Likewise. (rust-dtoa-0.4): Likewise. (rust-dtoa-0.2): Likewise. (rust-fallible-iterator-0.2): Likewise. (rust-filetime-0.2): Likewise. (rust-findshlibs-0.5): Likewise. (rust-fixedbitset-0.2): Likewise. (rust-fixedbitset-0.1): Likewise. (rust-fnv-1): Likewise. (rust-foreign-types-shared-0.2): Likewise. (rust-fs-extra-1): Likewise. (rust-fuchsia-cprng-0.1): Likewise. (rust-fuchsia-zircon-0.3): Likewise. (rust-fuchsia-zircon-sys-0.3): Likewise. (rust-futures-0.1): Likewise. (rust-futures-core-preview-0.3): Likewise. (rust-futures-cpupool-0.1): Likewise. (rust-futures-io-preview-0.3): Likewise. (rust-futures-sink-preview-0.3): Likewise. (rust-getopts-0.2): Likewise. (rust-glob-0.3): Likewise. (rust-glob-0.2): Likewise. (rust-heapsize-0.4): Likewise. (rust-heapsize-0.3): Likewise. (rust-heapsize-plugin-0.1): Likewise. (rust-heck-0.3): Likewise. (rust-hex-0.3): Likewise. (rust-hex-0.2): Likewise. (rust-hostname-0.1): Likewise. (rust-iovec-0.1): Likewise. (rust-itoa-0.4): Likewise. (rust-itoa-0.1): Likewise. (rust-json-0.11): Likewise. (rust-kernel32-sys-0.2): Likewise. (rust-language-tags-0.2): Likewise. (rust-lazy-static-1): Likewise. (rust-libloading-0.5): Likewise. (rust-lock-api-0.1): Likewise. (rust-log-0.4): Likewise. (rust-maplit-1): Likewise. (rust-matches-0.1): Likewise. (rust-matrixmultiply-0.2): Likewise. (rust-matrixmultiply-0.1): Likewise. (rust-md5-0.7): Likewise. (rust-md5-0.6): Likewise. (rust-memmap-0.7): Likewise. (rust-memmap-0.6): Likewise. (rust-mime-0.3): Likewise. (rust-miniz-oxide-0.3): Likewise. (rust-miniz-sys-0.1): Likewise. (rust-miow-0.3): Likewise. (rust-miow-0.2): Likewise. (rust-modifier-0.1): Likewise. (rust-net2-0.2): Likewise. (rust-nodrop-0.1): Likewise. (rust-nodrop-union-0.1): Likewise. (rust-num-traits-0.1): Likewise. (rust-numtoa-0.1): Likewise. (rust-openssl-probe-0.1): Likewise. (rust-owning-ref-0.4): Likewise. (rust-parity-wasm-0.40): Likewise. (rust-peeking-take-while-0.1): Likewise. (rust-percent-encoding-2): Likewise. (rust-percent-encoding-1): Likewise. (rust-permutohedron-0.2): Likewise. (rust-pico-sys-0.0): Likewise. (rust-pkg-config-0.3): Likewise. (rust-plain-0.2): Likewise. (rust-plugin-0.2): Likewise. (rust-pocket-resources-0.3): Likewise. (rust-ppv-lite86-0.2): Likewise. (rust-proc-macro2-1): Likewise. (rust-quick-error-2): Likewise. (rust-quick-error-1): Likewise. (rust-quote-1): Likewise. (rust-rand-0.7): Likewise. (rust-rand-0.6): Likewise. (rust-rand-0.3): Likewise. (rust-rand-chacha-0.1): Likewise. (rust-rand-core-0.4): Likewise. (rust-rand-core-0.3): Likewise. (rust-rand-hc-0.2): Likewise. (rust-rand-hc-0.1): Likewise. (rust-rand-isaac-0.1): Likewise. (rust-rand-jitter-0.1): Likewise. (rust-rand-os-0.1): Likewise. (rust-rand-pcg-0.3): Likewise. (rust-rand-pcg-0.2): Likewise. (rust-rand-pcg-0.1): Likewise. (rust-rand-xorshift-0.1): Likewise. (rust-rawpointer-0.2): Likewise. (rust-rawpointer-0.1): Likewise. (rust-rdrand-0.4): Likewise. (rust-redox-syscall-0.1): Likewise. (rust-redox-termios-0.1): Likewise. (rust-resolv-conf-0.6): Likewise. (rust-rustc-demangle-0.1): Likewise. (rust-rustc-serialize-0.3): Likewise. (rust-rustc-std-workspace-core-1): Likewise. (rust-ryu-1): Likewise. (rust-safemem-0.3): Likewise. (rust-same-file-1): Likewise. (rust-schannel-0.1): Likewise. (rust-scoped-threadpool-0.1): Likewise. (rust-scoped-tls-1): Likewise. (rust-scoped-tls-0.1): Likewise. (rust-scopeguard-1): Likewise. (rust-scopeguard-0.3): Likewise. (rust-security-framework-sys-0.3): Likewise. (rust-semver-parser-0.9): Likewise. (rust-semver-parser-0.7): Likewise. (rust-serde-derive-1): Likewise. (rust-shlex-1): Likewise. (rust-shlex-0.1): Likewise. (rust-slab-0.4): Likewise. (rust-socket2-0.3): Likewise. (rust-sourcefile-0.1): Likewise. (rust-spin-0.5): Likewise. (rust-stacker-0.1): Likewise. (rust-static-assertions-1): Likewise. (rust-static-assertions-0.3): Likewise. (rust-stdweb-internal-runtime-0.1): Likewise. (rust-stdweb-internal-test-macro-0.1): Likewise. (rust-streaming-stats-0.2): Likewise. (rust-strsim-0.9): Likewise. (rust-strsim-0.8): Likewise. (rust-synstructure-test-traits-0.1): Likewise. (rust-tar-0.4): Likewise. (rust-tempdir-0.3): Likewise. (rust-tempfile-3): Likewise. (rust-term-0.4): Likewise. (rust-term-0.2): Likewise. (rust-termcolor-1): Likewise. (rust-termion-1): Likewise. (rust-termios-0.3): Likewise. (rust-thread-id-3): Likewise. (rust-thread-local-1): Likewise. (rust-thread-local-0.3): Likewise. (rust-threadpool-1): Likewise. (rust-time-0.1): Likewise. (rust-tokio-mock-task-0.1): Likewise. (rust-toml-0.5): Likewise. (rust-tracing-core-0.1): Likewise. (rust-traitobject-0.1): Likewise. (rust-try-from-0.3): Likewise. (rust-try-lock-0.2): Likewise. (rust-typeable-0.1): Likewise. (rust-typemap-0.3): Likewise. (rust-typenum-1): Likewise. (rust-ucd-trie-0.1): Likewise. (rust-ucd-util-0.1): Likewise. (rust-unicode-xid-0.2): Likewise. (rust-unicode-xid-0.1): Likewise. (rust-unreachable-1): Likewise. (rust-unsafe-any-0.4): Likewise. (rust-untrusted-0.7): Likewise. (rust-vcpkg-0.2): Likewise. (rust-vec-map-0.8): Likewise. (rust-version-check-0.9): Likewise. (rust-version-check-0.1): Likewise. (rust-void-1): Likewise. (rust-wasi-0.5): Likewise. (rust-wasm-bindgen-shared-0.2): Likewise. (rust-wasm-bindgen-test-macro-0.2): Likewise. (rust-widestring-0.4): Likewise. (rust-winapi-0.3): Likewise. (rust-winapi-0.2): Likewise. (rust-winapi-build-0.1): Likewise. (rust-winapi-util-0.1): Likewise. (rust-wincolor-1): Likewise. (rust-winutil-0.1): Likewise. (rust-ws2-32-sys-0.2): Likewise. (rust-xattr-0.2): Likewise. (rust-xdg-2): Likewise. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Z572
2021-12-12gnu: Use librsvg-bootstrap....* gnu/packages/emacs.scm (emacs)[inputs]: Use librsvg-bootstrap. * gnu/pacakges/gtk.scm (gtk+-2, gtk+)[propagated-inputs]: Same. Efraim Flashner
2021-12-12gnu: Add librsvg-bootstrap....* gnu/packages/gnome.scm (librsvg-bootstrap): New variable. Efraim Flashner
2021-12-12gnu: go-1.14: Fix building on some platforms....* gnu/packages/golang.scm (go-1.14)[arguments]: In custom 'prebuild phase also search for loader without 'linux' in the string. In custom 'build phase set the GOCACHE directory. [native-inputs]: On systems which don't have support in go-1.4 use gccgo-10 instead. Efraim Flashner
2021-12-12gnu: python-patsy: Update to 0.5.2....* gnu/packages/statistics.scm (python-patsy): Update to 0.5.2. [arguments]: Run tests conditionally; run tests with pytest. [native-inputs]: Replace python-nose with python-pytest. Ricardo Wurmus
2021-12-12gnu: remmina: Build with libsoup 2....* gnu/packages/vnc.scm (remmina)[inputs]: Replace libsoup with libsoup-minimal-2. Ricardo Wurmus
2021-12-12gnu: salmon: Update to 1.6.0....* gnu/packages/bioinformatics.scm (salmon): Update to 1.6.0. [inputs]: Update pufferfish sources. Ricardo Wurmus